Experiment set13IT012 for Ralstonia sp. UNC404CL21Col

Compare to:

Acanthamoeba sp., muxed culture-2

200 most important genes:

  gene name fitness t score description  
ABZR87_RS09895 -4.1 -2.8 DUF1841 family protein compare
ABZR87_RS05170 -2.7 -4.4 acetylglutamate kinase compare
ABZR87_RS10120 -2.6 -2.8 YceD family protein compare
ABZR87_RS00325 -2.5 -3.0 peptidylprolyl isomerase compare
ABZR87_RS09635 -2.5 -2.9 ribosome small subunit-dependent GTPase A compare
ABZR87_RS09615 -2.4 -2.3 50S ribosomal protein L19 compare
ABZR87_RS04125 -2.4 -8.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS13175 -2.3 -2.5 tRNA-Leu compare
ABZR87_RS16180 -2.3 -4.8 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS05350 -2.2 -6.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS01615 -2.0 -2.6 RNB domain-containing ribonuclease compare
ABZR87_RS23415 -2.0 -3.5 metalloregulator ArsR/SmtB family transcription factor compare
ABZR87_RS13300 -1.9 -7.4 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS10980 -1.9 -1.6 tRNA-Leu compare
ABZR87_RS11435 -1.9 -4.0 Mth938-like domain-containing protein compare
ABZR87_RS07050 -1.9 -1.3 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS08695 -1.9 -8.4 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS07035 -1.9 -8.2 RNase adapter RapZ compare
ABZR87_RS13290 -1.8 -5.1 3-ketoacyl-ACP reductase compare
ABZR87_RS02850 -1.8 -2.7 elongation factor Tu compare
ABZR87_RS01285 -1.7 -2.0 preprotein translocase subunit YajC compare
ABZR87_RS07510 -1.6 -3.8 LysR family transcriptional regulator compare
ABZR87_RS10565 -1.6 -4.3 cupin domain-containing protein compare
ABZR87_RS15440 -1.6 -3.3 ribonuclease G compare
ABZR87_RS11525 -1.6 -2.2 molybdopterin-binding protein compare
ABZR87_RS14675 -1.5 -1.1 glyoxalase compare
ABZR87_RS12790 -1.5 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS10400 -1.5 -3.3 hypothetical protein compare
ABZR87_RS05010 -1.5 -3.2 rod shape-determining protein RodA compare
ABZR87_RS05025 -1.5 -2.1 rod shape-determining protein MreC compare
ABZR87_RS04975 -1.4 -2.2 peptide deformylase compare
ABZR87_RS07005 -1.4 -2.1 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS04940 -1.4 -4.5 PAS domain-containing sensor histidine kinase compare
ABZR87_RS07625 -1.4 -3.2 Holliday junction branch migration protein RuvA compare
ABZR87_RS06715 -1.4 -3.2 PTS sugar transporter subunit IIA compare
ABZR87_RS09935 -1.4 -3.6 amino acid aminotransferase compare
ABZR87_RS05590 -1.3 -0.9 orotate phosphoribosyltransferase compare
ABZR87_RS05100 -1.3 -4.1 RNA polymerase-binding protein DksA compare
ABZR87_RS16960 -1.2 -3.5 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS08655 -1.2 -3.4 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS12785 -1.2 -3.4 endopeptidase La compare
ABZR87_RS03180 -1.2 -2.5 hypothetical protein compare
ABZR87_RS10610 -1.2 -1.1 inositol monophosphatase family protein compare
ABZR87_RS04945 -1.2 -2.0 DUF4390 domain-containing protein compare
ABZR87_RS15705 -1.1 -2.7 UvrD-helicase domain-containing protein compare
ABZR87_RS10175 -1.1 -2.7 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS22415 -1.1 -2.1 universal stress protein compare
ABZR87_RS17440 -1.1 -1.5 (2Fe-2S)-binding protein compare
ABZR87_RS07700 -1.1 -1.2 peptidylprolyl isomerase compare
ABZR87_RS01645 -1.1 -2.9 type II 3-dehydroquinate dehydratase compare
ABZR87_RS14375 -1.0 -2.1 fumarate hydratase compare
ABZR87_RS23380 -1.0 -1.5 chemotaxis protein CheW compare
ABZR87_RS11015 -1.0 -3.7 amino-acid N-acetyltransferase compare
ABZR87_RS00865 -1.0 -1.2 VTT domain-containing protein compare
ABZR87_RS09465 -1.0 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS21815 -1.0 -0.9 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS02155 -1.0 -4.1 anthranilate phosphoribosyltransferase compare
ABZR87_RS12795 -1.0 -3.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS00455 -1.0 -2.9 DUF4126 domain-containing protein compare
ABZR87_RS10195 -1.0 -1.4 signal peptidase I compare
ABZR87_RS02480 -1.0 -2.0 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS01005 -1.0 -2.0 RNA-binding S4 domain-containing protein compare
ABZR87_RS08700 -1.0 -3.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS11615 -1.0 -2.4 LysR family transcriptional regulator compare
ABZR87_RS02160 -0.9 -3.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS08980 -0.9 -1.9 cell envelope integrity protein TolA compare
ABZR87_RS11125 -0.9 -3.1 cell division protein ZapE compare
ABZR87_RS06645 -0.9 -2.2 TlpA disulfide reductase family protein compare
ABZR87_RS20690 -0.9 -1.3 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS14505 -0.9 -3.1 phosphoribosylanthranilate isomerase compare
ABZR87_RS15505 -0.9 -1.0 DNA polymerase III subunit alpha compare
ABZR87_RS23445 -0.9 -2.0 malonate decarboxylase subunit delta compare
ABZR87_RS02340 -0.9 -6.2 Nramp family divalent metal transporter compare
ABZR87_RS06770 -0.9 -3.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS06350 -0.9 -2.9 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS07730 -0.9 -1.8 lysophospholipid acyltransferase family protein compare
ABZR87_RS10785 -0.9 -2.8 exodeoxyribonuclease V subunit beta compare
ABZR87_RS14010 -0.8 -1.6 avidin/streptavidin family protein compare
ABZR87_RS21585 -0.8 -1.9 multidrug efflux SMR transporter compare
ABZR87_RS00285 -0.8 -1.5 acetylornithine transaminase compare
ABZR87_RS20250 -0.8 -1.0 type VI secretion system lipoprotein TssJ compare
ABZR87_RS10780 -0.8 -2.9 PD-(D/E)XK nuclease family protein compare
ABZR87_RS06745 -0.8 -3.1 S41 family peptidase compare
ABZR87_RS18140 -0.8 -1.8 type III secretion system export apparatus subunit SctR compare
ABZR87_RS07620 -0.8 -2.7 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS00340 -0.8 -1.5 50S ribosomal protein L33 compare
ABZR87_RS18040 -0.8 -4.6 RNA polymerase sigma factor FliA compare
ABZR87_RS13790 -0.8 -3.8 chorismate synthase compare
ABZR87_RS18560 -0.8 -1.9 NmrA family NAD(P)-binding protein compare
ABZR87_RS11790 -0.8 -1.3 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS05140 -0.8 -1.2 ATP-binding protein compare
ABZR87_RS02590 -0.8 -4.2 3-dehydroquinate synthase compare
ABZR87_RS13705 -0.8 -1.1 integration host factor subunit alpha compare
ABZR87_RS13145 -0.8 -1.8 hypothetical protein compare
ABZR87_RS16155 -0.8 -3.5 ferritin-like domain-containing protein compare
ABZR87_RS11245 -0.8 -3.3 translational GTPase TypA compare
ABZR87_RS21470 -0.8 -1.5 P-II family nitrogen regulator compare
ABZR87_RS14970 -0.8 -2.2 DUF3106 domain-containing protein compare
ABZR87_RS13250 -0.8 -1.9 phosphoserine phosphatase SerB compare
ABZR87_RS19715 -0.8 -5.6 CusA/CzcA family heavy metal efflux RND transporter compare
ABZR87_RS20370 -0.8 -0.8 ABC transporter ATP-binding protein compare
ABZR87_RS21725 -0.8 -2.9 heavy metal response regulator transcription factor compare
ABZR87_RS10700 -0.8 -3.3 C40 family peptidase compare
ABZR87_RS14115 -0.7 -1.9 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS01430 -0.7 -5.9 LysR family transcriptional regulator compare
ABZR87_RS08950 -0.7 -2.8 transcriptional regulator NrdR compare
ABZR87_RS13205 -0.7 -1.8 hypothetical protein compare
ABZR87_RS16055 -0.7 -3.5 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS00360 -0.7 -1.3 acyl-CoA desaturase compare
ABZR87_RS14910 -0.7 -2.2 polyribonucleotide nucleotidyltransferase compare
ABZR87_RS07635 -0.7 -1.4 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS07060 -0.7 -5.7 RNA polymerase factor sigma-54 compare
ABZR87_RS01630 -0.7 -3.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
ABZR87_RS14500 -0.7 -4.8 tryptophan synthase subunit beta compare
ABZR87_RS12150 -0.7 -1.8 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS06920 -0.7 -2.2 maleylacetoacetate isomerase compare
ABZR87_RS21790 -0.7 -2.7 DUF3005 domain-containing protein compare
ABZR87_RS05015 -0.7 -2.8 penicillin-binding protein 2 compare
ABZR87_RS05645 -0.7 -2.0 SDR family oxidoreductase compare
ABZR87_RS11730 -0.7 -1.9 M55 family metallopeptidase compare
ABZR87_RS05145 -0.7 -0.8 copper chaperone PCu(A)C compare
ABZR87_RS10240 -0.7 -1.0 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS13475 -0.7 -3.0 PAS domain S-box protein compare
ABZR87_RS09440 -0.7 -2.8 DUF2059 domain-containing protein compare
ABZR87_RS16730 -0.7 -2.5 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS15305 -0.7 -1.1 pyroglutamyl-peptidase I compare
ABZR87_RS22485 -0.7 -3.0 FAD-dependent oxidoreductase compare
ABZR87_RS03625 -0.7 -0.7 hypothetical protein compare
ABZR87_RS22520 -0.7 -1.4 ABATE domain-containing protein compare
ABZR87_RS16185 -0.7 -0.8 dCTP deaminase compare
ABZR87_RS14340 -0.7 -2.0 methyl-accepting chemotaxis protein compare
ABZR87_RS17850 -0.7 -1.7 2-hydroxychromene-2-carboxylate isomerase compare
ABZR87_RS20300 -0.7 -2.0 hypothetical protein compare
ABZR87_RS12735 -0.7 -3.7 winged helix DNA-binding protein compare
ABZR87_RS00835 -0.7 -2.9 argininosuccinate synthase compare
ABZR87_RS19675 -0.6 -0.7 cold-shock protein compare
ABZR87_RS20500 -0.6 -0.7 hypothetical protein compare
ABZR87_RS12000 -0.6 -1.6 DUF2182 domain-containing protein compare
ABZR87_RS22385 -0.6 -3.1 cation-translocating P-type ATPase conserved
ABZR87_RS07675 -0.6 -3.2 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS21795 -0.6 -2.2 NUDIX domain-containing protein compare
ABZR87_RS19535 -0.6 -4.3 type II and III secretion system protein family protein compare
ABZR87_RS23235 -0.6 -2.9 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS22920 -0.6 -1.7 phosphogluconate dehydratase compare
ABZR87_RS02220 -0.6 -3.5 redox-regulated ATPase YchF compare
ABZR87_RS02140 -0.6 -4.8 anthranilate synthase component I compare
ABZR87_RS13350 -0.6 -2.2 potassium transporter Kup compare
ABZR87_RS01685 -0.6 -2.3 histone H1-like DNA-binding protein compare
ABZR87_RS11755 -0.6 -1.1 arsenate reductase compare
ABZR87_RS19530 -0.6 -2.7 Flp pilus assembly protein CpaB compare
ABZR87_RS03850 -0.6 -2.2 ureidoglycolate lyase compare
ABZR87_RS22330 -0.6 -2.0 hypothetical protein compare
ABZR87_RS10875 -0.6 -4.8 RNA polymerase sigma factor RpoS compare
ABZR87_RS13020 -0.6 -2.5 phage tail protein I compare
ABZR87_RS06145 -0.6 -2.5 XRE family transcriptional regulator compare
ABZR87_RS16400 -0.6 -1.6 LysR family transcriptional regulator compare
ABZR87_RS01085 -0.6 -2.0 rhombosortase compare
ABZR87_RS14615 -0.6 -3.9 DUF2863 family protein compare
ABZR87_RS22830 -0.6 -1.3 Crp/Fnr family transcriptional regulator compare
ABZR87_RS06760 -0.6 -2.8 glutaredoxin 3 compare
ABZR87_RS04285 -0.6 -4.0 sensor histidine kinase compare
ABZR87_RS00375 -0.6 -2.7 RsmB/NOP family class I SAM-dependent RNA methyltransferase compare
ABZR87_RS12120 -0.6 -0.5 isocitrate lyase/phosphoenolpyruvate mutase family protein compare
ABZR87_RS12800 -0.6 -2.2 trigger factor compare
ABZR87_RS19725 -0.6 -4.1 TolC family protein compare
ABZR87_RS17310 -0.6 -2.8 PadR family transcriptional regulator compare
ABZR87_RS07705 -0.6 -1.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS15605 -0.6 -1.0 hypothetical protein compare
ABZR87_RS16080 -0.6 -0.7 P-II family nitrogen regulator compare
ABZR87_RS00170 -0.6 -2.1 5-carboxymethyl-2-hydroxymuconate Delta-isomerase compare
ABZR87_RS00060 -0.6 -2.1 cobalamin-binding protein compare
ABZR87_RS05285 -0.6 -3.3 D-2-hydroxyacid dehydrogenase family protein compare
ABZR87_RS06560 -0.6 -2.9 aldehyde dehydrogenase family protein compare
ABZR87_RS11105 -0.6 -2.8 glycerophosphodiester phosphodiesterase compare
ABZR87_RS14445 -0.6 -1.9 PRC-barrel domain-containing protein compare
ABZR87_RS12965 -0.6 -1.0 tail protein X compare
ABZR87_RS16975 -0.6 -1.0 hypothetical protein compare
ABZR87_RS00720 -0.6 -2.8 biopolymer transporter ExbD compare
ABZR87_RS11925 -0.5 -3.3 phosphoenolpyruvate synthase compare
ABZR87_RS16820 -0.5 -2.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS08620 -0.5 -1.3 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
ABZR87_RS11220 -0.5 -3.2 tRNA pseudouridine(55) synthase TruB compare
ABZR87_RS01395 -0.5 -2.3 glutamate-5-semialdehyde dehydrogenase compare
ABZR87_RS04295 -0.5 -2.4 HU family DNA-binding protein compare
ABZR87_RS10190 -0.5 -2.6 translation elongation factor 4 compare
ABZR87_RS14135 -0.5 -1.5 transcription elongation factor GreA compare
ABZR87_RS17145 -0.5 -3.9 AMP nucleosidase compare
ABZR87_RS03430 -0.5 -3.4 type II secretion system minor pseudopilin GspK compare
ABZR87_RS17125 -0.5 -0.9 DUF2141 domain-containing protein compare
ABZR87_RS02595 -0.5 -3.3 shikimate kinase compare
ABZR87_RS16860 -0.5 -1.2 response regulator compare
ABZR87_RS02285 -0.5 -3.0 glucan biosynthesis protein G compare
ABZR87_RS22370 -0.5 -0.9 four-helix bundle copper-binding protein compare
ABZR87_RS04280 -0.5 -3.3 response regulator transcription factor compare
ABZR87_RS08670 -0.5 -2.8 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS14965 -0.5 -1.4 DUF3619 family protein compare
ABZR87_RS22340 -0.5 -0.5 hypothetical protein compare
ABZR87_RS03420 -0.5 -0.4 type II secretion system minor pseudopilin GspI compare
ABZR87_RS09850 -0.5 -1.9 DUF1993 family protein compare
ABZR87_RS15065 -0.5 -1.8 TMEM165/GDT1 family protein compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in micoeukaryotes experiments

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 across organisms