Experiment set13IT010 for Ralstonia sp. UNC404CL21Col

Compare to:

C.elegans, mixed culture-2

200 most important genes:

  gene name fitness t score description  
ABZR87_RS16080 -3.7 -4.4 P-II family nitrogen regulator compare
ABZR87_RS05350 -3.4 -6.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS10610 -3.1 -2.1 inositol monophosphatase family protein compare
ABZR87_RS12220 -3.1 -8.4 MgtC/SapB family protein compare
ABZR87_RS09635 -2.9 -3.1 ribosome small subunit-dependent GTPase A compare
ABZR87_RS07510 -2.7 -5.7 LysR family transcriptional regulator compare
ABZR87_RS07005 -2.7 -3.3 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS10170 -2.6 -5.2 RseA family anti-sigma factor compare
ABZR87_RS08695 -2.6 -7.8 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS00970 -2.6 -2.4 molecular chaperone DnaJ compare
ABZR87_RS16180 -2.6 -4.8 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS04975 -2.5 -3.6 peptide deformylase compare
ABZR87_RS13300 -2.3 -7.7 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS10085 -2.3 -2.2 Rne/Rng family ribonuclease compare
ABZR87_RS13290 -2.3 -5.6 3-ketoacyl-ACP reductase compare
ABZR87_RS01285 -2.2 -3.3 preprotein translocase subunit YajC compare
ABZR87_RS05100 -2.2 -6.4 RNA polymerase-binding protein DksA compare
ABZR87_RS02155 -2.1 -7.4 anthranilate phosphoribosyltransferase compare
ABZR87_RS08795 -1.9 -4.2 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS12790 -1.9 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS02160 -1.9 -5.3 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS02590 -1.9 -9.4 3-dehydroquinate synthase compare
ABZR87_RS07050 -1.9 -1.2 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS10700 -1.9 -7.1 C40 family peptidase compare
ABZR87_RS09615 -1.9 -1.8 50S ribosomal protein L19 compare
ABZR87_RS19575 -1.8 -10.0 sigma-54-dependent Fis family transcriptional regulator compare
ABZR87_RS01745 -1.8 -2.5 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS05025 -1.8 -2.4 rod shape-determining protein MreC compare
ABZR87_RS07035 -1.8 -8.2 RNase adapter RapZ compare
ABZR87_RS04125 -1.8 -6.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS04945 -1.8 -2.4 DUF4390 domain-containing protein compare
ABZR87_RS13175 -1.8 -1.4 tRNA-Leu compare
ABZR87_RS17145 -1.7 -11.2 AMP nucleosidase compare
ABZR87_RS16055 -1.7 -5.7 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS08655 -1.7 -3.7 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS01615 -1.7 -2.7 RNB domain-containing ribonuclease compare
ABZR87_RS05015 -1.6 -5.2 penicillin-binding protein 2 compare
ABZR87_RS05170 -1.6 -3.9 acetylglutamate kinase compare
ABZR87_RS22165 -1.6 -4.2 flagellar export chaperone FliS compare
ABZR87_RS10120 -1.6 -1.8 YceD family protein compare
ABZR87_RS12785 -1.6 -3.4 endopeptidase La compare
ABZR87_RS14910 -1.6 -3.5 polyribonucleotide nucleotidyltransferase compare
ABZR87_RS10195 -1.6 -1.8 signal peptidase I compare
ABZR87_RS10930 -1.6 -1.5 outer membrane protein assembly factor BamB compare
ABZR87_RS02655 -1.6 -9.7 anti-sigma factor compare
ABZR87_RS04940 -1.6 -4.7 PAS domain-containing sensor histidine kinase compare
ABZR87_RS14500 -1.5 -8.5 tryptophan synthase subunit beta compare
ABZR87_RS05010 -1.5 -3.3 rod shape-determining protein RodA compare
ABZR87_RS11940 -1.5 -2.8 SsrA-binding protein SmpB compare
ABZR87_RS02075 -1.5 -2.4 23S ribosomal RNA compare
ABZR87_RS08640 -1.5 -4.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS08980 -1.5 -3.3 cell envelope integrity protein TolA compare
ABZR87_RS09440 -1.5 -5.8 DUF2059 domain-containing protein compare
ABZR87_RS07635 -1.5 -2.2 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS08630 -1.4 -3.5 dihydroorotase compare
ABZR87_RS02850 -1.4 -2.4 elongation factor Tu compare
ABZR87_RS06745 -1.4 -4.2 S41 family peptidase compare
ABZR87_RS10780 -1.4 -4.2 PD-(D/E)XK nuclease family protein compare
ABZR87_RS13790 -1.4 -6.4 chorismate synthase compare
ABZR87_RS04295 -1.3 -5.2 HU family DNA-binding protein compare
ABZR87_RS07060 -1.3 -9.6 RNA polymerase factor sigma-54 compare
ABZR87_RS19675 -1.3 -1.2 cold-shock protein compare
ABZR87_RS06770 -1.3 -4.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS14375 -1.3 -2.8 fumarate hydratase compare
ABZR87_RS06350 -1.3 -3.5 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS19535 -1.3 -7.7 type II and III secretion system protein family protein compare
ABZR87_RS12345 -1.3 -0.9 dethiobiotin synthase compare
ABZR87_RS06715 -1.3 -2.3 PTS sugar transporter subunit IIA compare
ABZR87_RS20370 -1.3 -1.2 ABC transporter ATP-binding protein compare
ABZR87_RS04725 -1.3 -1.5 universal stress protein compare
ABZR87_RS10175 -1.2 -3.7 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS14505 -1.2 -3.0 phosphoribosylanthranilate isomerase compare
ABZR87_RS15440 -1.2 -2.9 ribonuclease G compare
ABZR87_RS01630 -1.2 -6.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
ABZR87_RS10565 -1.2 -2.9 cupin domain-containing protein compare
ABZR87_RS15705 -1.2 -2.9 UvrD-helicase domain-containing protein compare
ABZR87_RS00795 -1.2 -2.8 site-specific tyrosine recombinase XerD compare
ABZR87_RS05275 -1.2 -5.2 winged helix-turn-helix domain-containing protein compare
ABZR87_RS02140 -1.2 -9.0 anthranilate synthase component I compare
ABZR87_RS22265 -1.2 -4.2 flagellar basal-body rod protein FlgG compare
ABZR87_RS07730 -1.1 -2.0 lysophospholipid acyltransferase family protein compare
ABZR87_RS11245 -1.1 -2.9 translational GTPase TypA compare
ABZR87_RS19130 -1.1 -4.7 ATP-binding protein compare
ABZR87_RS12735 -1.1 -6.4 winged helix DNA-binding protein compare
ABZR87_RS11755 -1.1 -1.6 arsenate reductase compare
ABZR87_RS16885 -1.1 -1.4 hypothetical protein compare
ABZR87_RS06495 -1.1 -1.9 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS05060 -1.1 -3.9 DUF484 family protein compare
ABZR87_RS07760 -1.1 -1.5 HlyC/CorC family transporter compare
ABZR87_RS22920 -1.1 -3.0 phosphogluconate dehydratase compare
ABZR87_RS11015 -1.1 -3.4 amino-acid N-acetyltransferase compare
ABZR87_RS02595 -1.1 -5.6 shikimate kinase compare
ABZR87_RS16515 -1.1 -2.1 helix-turn-helix domain-containing protein compare
ABZR87_RS08970 -1.0 -5.0 protein TolQ compare
ABZR87_RS14595 -1.0 -4.6 hypothetical protein compare
ABZR87_RS07620 -1.0 -2.9 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS21795 -1.0 -2.8 NUDIX domain-containing protein compare
ABZR87_RS08700 -1.0 -3.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS22485 -1.0 -3.9 FAD-dependent oxidoreductase compare
ABZR87_RS22065 -1.0 -4.1 flagellar protein export ATPase FliI compare
ABZR87_RS10980 -1.0 -0.7 tRNA-Leu compare
ABZR87_RS02445 -1.0 -3.5 Sec-independent protein translocase protein TatB compare
ABZR87_RS19520 -1.0 -5.4 prepilin peptidase compare
ABZR87_RS19550 -1.0 -3.8 type II secretion system F family protein compare
ABZR87_RS00875 -1.0 -2.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS03435 -1.0 -5.2 type II secretion system protein GspL compare
ABZR87_RS19495 -1.0 -4.6 helix-turn-helix transcriptional regulator compare
ABZR87_RS10875 -1.0 -7.5 RNA polymerase sigma factor RpoS compare
ABZR87_RS01980 -1.0 -1.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS17360 -1.0 -4.9 glucan biosynthesis protein compare
ABZR87_RS06920 -1.0 -2.7 maleylacetoacetate isomerase compare
ABZR87_RS14080 -1.0 -2.4 phosphate signaling complex protein PhoU compare
ABZR87_RS18840 -1.0 -5.6 cytochrome ubiquinol oxidase subunit I compare
ABZR87_RS14970 -1.0 -3.0 DUF3106 domain-containing protein compare
ABZR87_RS18335 -0.9 -1.6 GntR family transcriptional regulator compare
ABZR87_RS03430 -0.9 -5.8 type II secretion system minor pseudopilin GspK compare
ABZR87_RS19570 -0.9 -6.2 TadG family pilus assembly protein compare
ABZR87_RS15505 -0.9 -1.0 DNA polymerase III subunit alpha compare
ABZR87_RS04995 -0.9 -1.5 DNA topoisomerase III compare
ABZR87_RS05580 -0.9 -2.5 diaminopimelate epimerase compare
ABZR87_RS06190 -0.9 -1.8 enoyl-CoA hydratase/isomerase family protein compare
ABZR87_RS16125 -0.9 -3.5 heme biosynthesis protein HemY compare
ABZR87_RS02220 -0.9 -5.4 redox-regulated ATPase YchF compare
ABZR87_RS16820 -0.9 -5.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS01430 -0.9 -7.0 LysR family transcriptional regulator compare
ABZR87_RS02285 -0.9 -4.9 glucan biosynthesis protein G compare
ABZR87_RS19500 -0.9 -7.4 ShlB/FhaC/HecB family hemolysin secretion/activation protein compare
ABZR87_RS11675 -0.9 -1.7 disulfide bond formation protein B compare
ABZR87_RS13145 -0.9 -2.5 hypothetical protein compare
ABZR87_RS19305 -0.9 -1.4 SctK family type III secretion system sorting platform protein compare
ABZR87_RS08990 -0.9 -3.0 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS05590 -0.9 -1.0 orotate phosphoribosyltransferase compare
ABZR87_RS06725 -0.9 -7.6 phosphoenolpyruvate--protein phosphotransferase compare
ABZR87_RS02325 -0.9 -3.3 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS16170 -0.9 -2.9 argininosuccinate lyase compare
ABZR87_RS10910 -0.9 -1.9 RodZ family helix-turn-helix domain-containing protein compare
ABZR87_RS19530 -0.9 -3.8 Flp pilus assembly protein CpaB compare
ABZR87_RS22175 -0.9 -5.7 flagellin compare
ABZR87_RS19525 -0.9 -4.4 TadE/TadG family type IV pilus assembly protein compare
ABZR87_RS22080 -0.9 -6.0 flagellar basal-body MS-ring/collar protein FliF compare
ABZR87_RS22290 -0.9 -3.5 flagellar basal body rod protein FlgB compare
ABZR87_RS13205 -0.9 -2.5 hypothetical protein compare
ABZR87_RS19580 -0.9 -5.4 DUF2968 domain-containing protein compare
ABZR87_RS13400 -0.9 -0.8 hypothetical protein compare
ABZR87_RS16730 -0.8 -3.4 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS19510 -0.8 -3.6 collagen-like triple helix repeat-containing protein compare
ABZR87_RS18040 -0.8 -4.3 RNA polymerase sigma factor FliA compare
ABZR87_RS16185 -0.8 -1.0 dCTP deaminase compare
ABZR87_RS03180 -0.8 -1.8 hypothetical protein compare
ABZR87_RS23230 -0.8 -4.0 NAD(P)-dependent oxidoreductase compare
ABZR87_RS19725 -0.8 -5.2 TolC family protein compare
ABZR87_RS10785 -0.8 -3.0 exodeoxyribonuclease V subunit beta compare
ABZR87_RS17650 -0.8 -2.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS13475 -0.8 -3.6 PAS domain S-box protein compare
ABZR87_RS18695 -0.8 -4.0 sugar-binding transcriptional regulator compare
ABZR87_RS06550 -0.8 -6.0 DMT family transporter compare
ABZR87_RS14135 -0.8 -2.6 transcription elongation factor GreA compare
ABZR87_RS07705 -0.8 -2.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS01110 -0.8 -4.2 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS16960 -0.8 -2.6 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS19560 -0.8 -3.1 lipoprotein compare
ABZR87_RS22190 -0.8 -2.6 flagellar basal body-associated protein FliL compare
ABZR87_RS18400 -0.8 -1.5 hypothetical protein compare
ABZR87_RS16340 -0.8 -1.8 ABC transporter ATP-binding protein compare
ABZR87_RS16735 -0.8 -6.3 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS22210 -0.8 -3.9 flagellar type III secretion system pore protein FliP compare
ABZR87_RS22245 -0.8 -5.7 flagellar hook-associated protein FlgK compare
ABZR87_RS17910 -0.8 -4.2 IclR family transcriptional regulator compare
ABZR87_RS17080 -0.8 -1.4 DUF2946 family protein compare
ABZR87_RS17405 -0.8 -2.1 nucleobase:cation symporter-2 family protein compare
ABZR87_RS04785 -0.8 -3.7 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS15250 -0.8 -3.8 PP2C family serine/threonine-protein phosphatase compare
ABZR87_RS03850 -0.8 -3.0 ureidoglycolate lyase compare
ABZR87_RS20035 -0.8 -2.4 helix-turn-helix domain-containing protein compare
ABZR87_RS22240 -0.8 -4.1 flagellar hook-associated protein FlgL compare
ABZR87_RS18140 -0.8 -1.9 type III secretion system export apparatus subunit SctR compare
ABZR87_RS22220 -0.8 -3.3 flagellar biosynthetic protein FliR compare
ABZR87_RS22280 -0.8 -2.9 flagellar hook assembly protein FlgD compare
ABZR87_RS12070 -0.8 -1.1 porin compare
ABZR87_RS11790 -0.8 -1.9 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS22055 -0.8 -2.3 flagellar hook-length control protein FliK compare
ABZR87_RS06545 -0.8 -1.8 hypothetical protein compare
ABZR87_RS03445 -0.8 -4.1 type II secretion system protein N compare
ABZR87_RS14490 -0.8 -4.8 tryptophan synthase subunit alpha compare
ABZR87_RS11725 -0.8 -1.9 P1 family peptidase compare
ABZR87_RS07470 -0.7 -4.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS17950 -0.7 -3.8 flagellar motor protein MotB compare
ABZR87_RS06565 -0.7 -6.1 choline dehydrogenase compare
ABZR87_RS03490 -0.7 -6.5 indolepyruvate ferredoxin oxidoreductase family protein compare
ABZR87_RS22295 -0.7 -5.7 flagellar basal body P-ring formation chaperone FlgA compare
ABZR87_RS09640 -0.7 -2.3 M48 family metallopeptidase compare
ABZR87_RS12065 -0.7 -2.2 L-rhamnose mutarotase compare
ABZR87_RS01420 -0.7 -1.7 outer membrane protein assembly factor BamE compare
ABZR87_RS19540 -0.7 -3.0 CpaE family protein compare
ABZR87_RS22260 -0.7 -2.3 flagellar basal body L-ring protein FlgH compare
ABZR87_RS18170 -0.7 -1.0 hypothetical protein compare
ABZR87_RS06560 -0.7 -3.7 aldehyde dehydrogenase family protein compare
ABZR87_RS10030 -0.7 -1.4 SDR family oxidoreductase compare
ABZR87_RS22285 -0.7 -2.8 flagellar basal body rod protein FlgC compare
ABZR87_RS01450 -0.7 -2.0 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare


Specific Phenotypes

For 3 genes in this experiment

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 in Ralstonia sp. UNC404CL21Col

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 across organisms