Experiment set13IT007 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glucose (C) and Ammonium chloride (N); with MOPS; with Sodium chloride

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS14715 +6.7 33.0 protein-glutamate O-methyltransferase CheR compare
PFLU_RS08655 +6.6 14.2 heme ABC transporter permease compare
PFLU_RS08665 +6.2 16.4 cytochrome c maturation protein CcmE compare
PFLU_RS08670 +6.1 20.9 heme lyase CcmF/NrfE family subunit compare
PFLU_RS08650 +6.0 8.7 heme exporter protein CcmB compare
PFLU_RS08660 +5.8 13.4 heme exporter protein CcmD compare
PFLU_RS08675 +5.3 14.8 DsbE family thiol:disulfide interchange protein compare
PFLU_RS27920 +4.5 32.9 hypothetical protein compare
PFLU_RS25865 +4.1 8.4 YhbY family RNA-binding protein compare
PFLU_RS29810 +3.8 24.6 LysR family transcriptional regulator compare
PFLU_RS00460 +3.8 27.3 glutamate/aspartate:proton symporter GltP compare
PFLU_RS02585 +3.6 15.8 protease modulator HflC compare
PFLU_RS02580 +3.6 23.7 FtsH protease activity modulator HflK compare
PFLU_RS00435 +3.6 24.1 PAS domain-containing protein compare
PFLU_RS18885 +3.1 3.1 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS23325 +2.9 17.6 GlxA family transcriptional regulator compare
PFLU_RS23595 +2.6 19.4 LacI family DNA-binding transcriptional regulator conserved
PFLU_RS14050 +2.5 2.9 hypothetical protein compare
PFLU_RS31275 +2.4 1.7 hypothetical protein compare
PFLU_RS27910 +2.3 2.5 helix-turn-helix transcriptional regulator compare
PFLU_RS15810 +2.2 2.8 hypothetical protein compare
PFLU_RS22600 +2.2 3.4 RNA polymerase sigma factor SigX compare
PFLU_RS25200 +2.1 12.3 protoheme IX farnesyltransferase compare
PFLU_RS13120 +2.1 2.0 hypothetical protein compare
PFLU_RS01880 +2.1 13.8 twin-arginine translocase subunit TatC compare
PFLU_RS25205 +2.1 8.3 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS04200 +2.0 14.5 cytochrome bc complex cytochrome b subunit compare
PFLU_RS00040 +2.0 14.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS07805 +1.9 14.8 transaldolase compare
PFLU_RS01875 +1.9 1.9 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS25210 +1.9 7.7 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS01885 +1.8 7.9 Sec-independent protein translocase subunit TatB compare
PFLU_RS13715 +1.8 1.6 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS04195 +1.8 6.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS04835 +1.8 1.8 hypothetical protein compare
PFLU_RS19665 +1.8 2.6 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS22380 +1.8 7.0 sulfite exporter TauE/SafE family protein compare
PFLU_RS22375 +1.7 10.3 cbb3-type cytochrome oxidase assembly protein CcoS compare
PFLU_RS12915 +1.7 3.8 methyltransferase domain-containing protein compare
PFLU_RS24175 +1.7 8.6 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
PFLU_RS06055 +1.7 1.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS31010 +1.7 1.0 transposase compare
PFLU_RS00410 +1.7 9.9 cytochrome c4 compare
PFLU_RS11380 +1.7 1.7 sarcosine oxidase subunit delta compare
PFLU_RS16565 +1.7 5.2 hypothetical protein compare
PFLU_RS17495 +1.7 2.1 hypothetical protein compare
PFLU_RS22370 +1.7 10.1 cadmium-translocating P-type ATPase compare
PFLU_RS13750 +1.6 2.0 hypothetical protein compare
PFLU_RS29065 +1.6 1.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS16390 +1.6 1.3 DUF411 domain-containing protein compare
PFLU_RS00405 +1.6 6.3 cytochrome c5 family protein compare
PFLU_RS25225 +1.6 7.6 disulfide bond formation protein B compare
PFLU_RS04205 +1.6 9.8 cytochrome c1 compare
PFLU_RS28645 +1.6 12.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS05965 +1.5 1.3 hypothetical protein compare
PFLU_RS22360 +1.5 11.9 cytochrome c oxidase accessory protein CcoG compare
PFLU_RS14370 +1.5 3.5 hypothetical protein compare
PFLU_RS25220 +1.5 7.7 ubiquinol oxidase subunit II compare
PFLU_RS25570 +1.5 3.1 OmpA family protein compare
PFLU_RS13610 +1.4 3.0 ABC transporter ATP-binding protein compare
PFLU_RS25215 +1.4 8.4 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS14440 +1.4 1.2 hypothetical protein compare
PFLU_RS28910 +1.4 6.7 glycine cleavage system protein GcvH compare
PFLU_RS00870 +1.4 1.0 hypothetical protein compare
PFLU_RS05875 +1.3 2.1 lysozyme compare
PFLU_RS21240 +1.3 1.3 hypothetical protein compare
PFLU_RS07525 +1.3 1.4 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS16055 +1.3 3.2 GntR family transcriptional regulator compare
PFLU_RS24690 +1.3 9.0 membrane-bound lytic murein transglycosylase MltF compare
PFLU_RS19745 +1.3 2.1 acetylornithine deacetylase compare
PFLU_RS17815 +1.3 2.5 response regulator compare
PFLU_RS04155 +1.3 4.8 alpha/beta fold hydrolase compare
PFLU_RS31630 +1.3 2.6 hypothetical protein compare
PFLU_RS05475 +1.3 6.6 amino acid permease compare
PFLU_RS08685 +1.3 5.7 c-type cytochrome biogenesis protein CcmI compare
PFLU_RS23345 +1.3 6.9 ABC transporter permease compare
PFLU_RS14125 +1.3 3.8 lysozyme compare
PFLU_RS05340 +1.3 2.0 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS08060 +1.3 3.5 YciK family oxidoreductase compare
PFLU_RS29385 +1.2 10.0 AsnC family transcriptional regulator compare
PFLU_RS17080 +1.2 2.4 FadR family transcriptional regulator compare
PFLU_RS23070 +1.2 1.4 50S ribosomal protein L32 compare
PFLU_RS15770 +1.2 3.0 type II secretion system protein GspG compare
PFLU_RS29365 +1.2 7.6 cupin domain-containing protein compare
PFLU_RS06125 +1.2 6.4 hypothetical protein compare
PFLU_RS18805 +1.2 2.1 ABC transporter ATP-binding protein compare
PFLU_RS02455 +1.2 2.2 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS21910 +1.2 8.8 BamA/TamA family outer membrane protein compare
PFLU_RS20195 +1.2 4.8 hypothetical protein compare
PFLU_RS12260 +1.2 1.0 hypothetical protein compare
PFLU_RS31780 +1.2 2.5 hypothetical protein compare
PFLU_RS19905 +1.2 3.0 general secretion pathway protein GspL compare
PFLU_RS01065 +1.1 3.1 biopolymer transporter ExbD compare
PFLU_RS21360 +1.1 1.1 MarR family transcriptional regulator compare
PFLU_RS12430 +1.1 3.4 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS17750 +1.1 1.8 pirin family protein compare
PFLU_RS15795 +1.1 1.7 hypothetical protein compare
PFLU_RS12615 +1.1 2.7 oxidoreductase compare
PFLU_RS17025 +1.1 5.0 HAAAP family serine/threonine permease compare
PFLU_RS18655 +1.1 1.5 NADH-quinone oxidoreductase subunit J compare
PFLU_RS08065 +1.1 6.1 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS29480 +1.1 6.0 exodeoxyribonuclease III compare
PFLU_RS13365 +1.1 1.3 hypothetical protein compare
PFLU_RS14430 +1.1 1.7 arsenate reductase ArsC compare
PFLU_RS01930 +1.1 3.7 phasin family protein compare
PFLU_RS03980 +1.1 5.0 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS14710 +1.1 4.6 response regulator compare
PFLU_RS05660 +1.1 7.3 glycerol kinase GlpK compare
PFLU_RS05050 +1.1 1.5 response regulator transcription factor compare
PFLU_RS10045 +1.1 2.0 hypothetical protein compare
PFLU_RS15950 +1.1 2.6 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
PFLU_RS12675 +1.1 1.6 DUF2946 domain-containing protein compare
PFLU_RS00155 +1.1 5.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PFLU_RS23350 +1.1 5.5 ABC transporter substrate-binding protein compare
PFLU_RS19915 +1.1 1.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS04140 +1.1 2.0 response regulator transcription factor compare
PFLU_RS18015 +1.1 2.4 energy transducer TonB compare
PFLU_RS17115 +1.0 4.3 DUF4381 domain-containing protein compare
PFLU_RS18420 +1.0 1.0 hypothetical protein compare
PFLU_RS26955 +1.0 5.3 sugar nucleotide-binding protein compare
PFLU_RS12220 +1.0 1.8 AraC family transcriptional regulator compare
PFLU_RS22365 +1.0 3.3 membrane protein compare
PFLU_RS12005 +1.0 3.9 helix-turn-helix domain-containing protein compare
PFLU_RS13105 +1.0 1.6 nuclear transport factor 2 family protein compare
PFLU_RS15745 +1.0 1.8 type II secretion system ATPase GspE compare
PFLU_RS31645 +1.0 1.4 hypothetical protein compare
PFLU_RS10355 +1.0 1.6 DeoR family transcriptional regulator compare
PFLU_RS28270 +1.0 0.9 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS02095 +1.0 2.5 hypothetical protein compare
PFLU_RS24900 +1.0 3.3 tRNA guanosine(34) transglycosylase Tgt compare
PFLU_RS02870 +1.0 2.3 N-acetyltransferase compare
PFLU_RS13315 +1.0 1.6 class I SAM-dependent methyltransferase compare
PFLU_RS15755 +1.0 1.2 type II secretion system protein M compare
PFLU_RS19730 +1.0 1.3 glyoxylate/hydroxypyruvate reductase A compare
PFLU_RS29505 +1.0 2.5 DNA-directed RNA polymerase subunit omega compare
PFLU_RS12205 +1.0 1.1 DNA binding protein compare
PFLU_RS15150 +1.0 4.2 PAS domain S-box protein compare
PFLU_RS14475 +1.0 2.7 molybdenum ABC transporter ATP-binding protein compare
PFLU_RS13725 +1.0 3.0 FMN-dependent NADH-azoreductase compare
PFLU_RS31800 +1.0 1.2 hypothetical protein compare
PFLU_RS21015 +1.0 2.1 alpha/beta fold hydrolase compare
PFLU_RS26505 +1.0 1.6 DUF2788 domain-containing protein compare
PFLU_RS17105 +0.9 4.5 MoxR family ATPase compare
PFLU_RS08100 +0.9 3.1 histidinol-phosphate transaminase compare
PFLU_RS28200 +0.9 4.5 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS02205 +0.9 3.8 potassium/proton antiporter compare
PFLU_RS13765 +0.9 1.3 hypothetical protein compare
PFLU_RS31185 +0.9 3.0 hypothetical protein compare
PFLU_RS02950 +0.9 3.6 copper chaperone PCu(A)C compare
PFLU_RS14355 +0.9 2.0 DUF2388 domain-containing protein compare
PFLU_RS18005 +0.9 1.4 acyl-CoA/acyl-ACP dehydrogenase compare
PFLU_RS02575 +0.9 4.7 GTPase HflX compare
PFLU_RS14005 +0.9 1.3 hypothetical protein compare
PFLU_RS18725 +0.9 1.0 alpha/beta hydrolase compare
PFLU_RS20870 +0.9 1.1 hypothetical protein compare
PFLU_RS28570 +0.9 2.5 DUF2868 domain-containing protein compare
PFLU_RS31415 +0.9 2.6 hypothetical protein compare
PFLU_RS29380 +0.9 5.1 D-amino acid dehydrogenase compare
PFLU_RS16885 +0.9 2.5 DMT family transporter compare
PFLU_RS17125 +0.9 4.1 VWA domain-containing protein compare
PFLU_RS25125 +0.9 4.7 biliverdin-producing heme oxygenase compare
PFLU_RS15045 +0.9 2.7 glycosyl hydrolase compare
PFLU_RS29105 +0.9 5.2 DedA family protein compare
PFLU_RS18515 +0.9 1.1 fluoride efflux transporter CrcB compare
PFLU_RS28295 +0.9 5.7 response regulator compare
PFLU_RS31840 +0.9 0.7 hypothetical protein compare
PFLU_RS16450 +0.9 2.3 methyltransferase domain-containing protein compare
PFLU_RS09845 +0.9 1.3 biotin carboxyl carrier domain-containing protein compare
PFLU_RS24980 +0.9 1.7 purine-binding chemotaxis protein CheW compare
PFLU_RS29255 +0.9 1.6 iron donor protein CyaY compare
PFLU_RS12780 +0.9 3.5 hypothetical protein compare
PFLU_RS19985 +0.9 1.5 iron chelate uptake ABC transporter family permease subunit compare
PFLU_RS17120 +0.9 2.8 VWA domain-containing protein compare
PFLU_RS01540 +0.9 5.2 ABC transporter ATP-binding protein compare
PFLU_RS16045 +0.9 2.2 aromatic ring-hydroxylating dioxygenase subunit alpha compare
PFLU_RS17675 +0.8 1.7 hypothetical protein compare
PFLU_RS23315 +0.8 3.8 aspartate aminotransferase family protein compare
PFLU_RS01850 +0.8 3.5 transporter substrate-binding domain-containing protein compare
PFLU_RS13695 +0.8 3.1 nicotinamide mononucleotide transporter compare
PFLU_RS00445 +0.8 1.2 hypothetical protein compare
PFLU_RS24130 +0.8 1.6 protein SlyX compare
PFLU_RS00850 +0.8 1.2 hypothetical protein compare
PFLU_RS07105 +0.8 3.3 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS17595 +0.8 2.6 GDP-mannose pyrophosphatase compare
PFLU_RS17380 +0.8 3.2 DUF924 family protein compare
PFLU_RS02280 +0.8 5.4 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS08155 +0.8 0.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS15970 +0.8 1.6 DUF861 domain-containing protein compare
PFLU_RS22440 +0.8 3.2 extradiol dioxygenase compare
PFLU_RS18675 +0.8 1.5 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS08525 +0.8 2.4 glutathione peroxidase compare
PFLU_RS17525 +0.8 1.2 NUDIX domain-containing protein compare
PFLU_RS13305 +0.8 1.9 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS01890 +0.8 2.5 twin-arginine translocase TatA/TatE family subunit compare
PFLU_RS26145 +0.8 0.7 hypothetical protein compare
PFLU_RS15220 +0.8 1.8 hypothetical protein compare
PFLU_RS28210 +0.8 1.5 RidA family protein compare
PFLU_RS23220 +0.8 1.7 tRNA-Arg compare
PFLU_RS06100 +0.8 3.5 hypothetical protein compare
PFLU_RS19820 +0.8 1.5 GNAT family N-acetyltransferase compare


Specific Phenotypes

For 17 genes in this experiment

For stress D-Glucose in Pseudomonas fluorescens SBW25-INTG

For stress D-Glucose across organisms