Experiment set13IT007 for Shewanella oneidensis MR-1
LB; anaerobic; flight
Group: flight_in_spaceMedia: LB, pH=7.2
Culturing: MR1_ML3b, Bioserve FPA, Anaerobic, at 30 (C)
By: Michael Dougherty on 25-Jun-18
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 4 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| ABC transporter tungstate (TC 3.A.1.6.2) | 1 |
| Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fatty acid biosynthesis
- 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation
- Phenylalanine metabolism
- gamma-Hexachlorocyclohexane degradation
- Fluorobenzoate degradation
- Tryptophan metabolism
- Fluorene degradation
- Propanoate metabolism
- Isoflavonoid biosynthesis
- Biosynthesis of unsaturated fatty acids
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| 8-methylmenaquinone biosynthesis | 1 | 1 | 1 |
| 7,8-dimethylmenaquinone biosynthesis | 5 | 1 | 1 |