Experiment set13IT007 for Ralstonia sp. UNC404CL21Col

Compare to:

Dictyostellum sp.mixed culture-1

200 most important genes:

  gene name fitness t score description  
ABZR87_RS09615 -4.2 -2.9 50S ribosomal protein L19 compare
ABZR87_RS01615 -3.4 -4.2 RNB domain-containing ribonuclease compare
ABZR87_RS08645 -3.3 -1.4 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS08630 -3.3 -4.5 dihydroorotase compare
ABZR87_RS16180 -3.3 -3.2 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS00285 -3.1 -2.1 acetylornithine transaminase compare
ABZR87_RS05350 -3.1 -7.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS12220 -2.9 -8.9 MgtC/SapB family protein compare
ABZR87_RS05170 -2.8 -4.2 acetylglutamate kinase compare
ABZR87_RS07510 -2.8 -5.8 LysR family transcriptional regulator compare
ABZR87_RS04125 -2.7 -8.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS08795 -2.6 -4.7 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS04975 -2.6 -2.4 peptide deformylase compare
ABZR87_RS09635 -2.6 -3.0 ribosome small subunit-dependent GTPase A compare
ABZR87_RS12790 -2.5 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS08695 -2.3 -8.2 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS13300 -2.2 -7.6 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS07635 -2.2 -3.6 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS02850 -2.1 -4.0 elongation factor Tu compare
ABZR87_RS05010 -2.1 -3.7 rod shape-determining protein RodA compare
ABZR87_RS07035 -2.1 -9.0 RNase adapter RapZ compare
ABZR87_RS16960 -2.0 -5.0 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS12785 -2.0 -4.1 endopeptidase La compare
ABZR87_RS11760 -2.0 -1.2 membrane protein compare
ABZR87_RS02590 -2.0 -9.4 3-dehydroquinate synthase compare
ABZR87_RS02075 -1.9 -1.8 23S ribosomal RNA compare
ABZR87_RS17145 -1.9 -11.2 AMP nucleosidase compare
ABZR87_RS06745 -1.9 -4.6 S41 family peptidase compare
ABZR87_RS07050 -1.9 -1.3 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS01980 -1.9 -2.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS08640 -1.9 -4.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS05100 -1.9 -5.8 RNA polymerase-binding protein DksA compare
ABZR87_RS02160 -1.8 -4.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS16055 -1.8 -6.6 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS13290 -1.8 -4.8 3-ketoacyl-ACP reductase compare
ABZR87_RS02480 -1.8 -4.1 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS01285 -1.8 -1.9 preprotein translocase subunit YajC compare
ABZR87_RS19675 -1.7 -1.5 cold-shock protein compare
ABZR87_RS14500 -1.7 -9.3 tryptophan synthase subunit beta compare
ABZR87_RS11330 -1.7 -3.4 transcriptional repressor LexA compare
ABZR87_RS10195 -1.7 -1.9 signal peptidase I compare
ABZR87_RS15305 -1.7 -3.1 pyroglutamyl-peptidase I compare
ABZR87_RS14965 -1.6 -3.1 DUF3619 family protein compare
ABZR87_RS05025 -1.6 -2.1 rod shape-determining protein MreC compare
ABZR87_RS07620 -1.6 -4.2 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS02655 -1.6 -9.1 anti-sigma factor compare
ABZR87_RS11790 -1.6 -3.3 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS13705 -1.6 -1.5 integration host factor subunit alpha compare
ABZR87_RS10120 -1.6 -1.0 YceD family protein compare
ABZR87_RS04940 -1.6 -4.8 PAS domain-containing sensor histidine kinase compare
ABZR87_RS06350 -1.6 -4.5 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS22055 -1.6 -3.9 flagellar hook-length control protein FliK compare
ABZR87_RS16170 -1.6 -4.0 argininosuccinate lyase compare
ABZR87_RS02155 -1.5 -6.7 anthranilate phosphoribosyltransferase compare
ABZR87_RS06770 -1.5 -4.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS10700 -1.5 -8.4 C40 family peptidase compare
ABZR87_RS09440 -1.5 -4.8 DUF2059 domain-containing protein compare
ABZR87_RS02140 -1.5 -11.3 anthranilate synthase component I compare
ABZR87_RS08655 -1.5 -3.8 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS08990 -1.5 -5.5 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS07005 -1.5 -1.9 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS07760 -1.4 -3.1 HlyC/CorC family transporter compare
ABZR87_RS22585 -1.4 -1.9 methyl-accepting chemotaxis protein compare
ABZR87_RS02145 -1.4 -2.2 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS05015 -1.4 -4.7 penicillin-binding protein 2 compare
ABZR87_RS14505 -1.4 -2.9 phosphoribosylanthranilate isomerase compare
ABZR87_RS17440 -1.4 -1.8 (2Fe-2S)-binding protein compare
ABZR87_RS01745 -1.3 -3.0 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS19575 -1.3 -7.3 sigma-54-dependent Fis family transcriptional regulator compare
ABZR87_RS10170 -1.3 -3.6 RseA family anti-sigma factor compare
ABZR87_RS07730 -1.3 -2.1 lysophospholipid acyltransferase family protein compare
ABZR87_RS06405 -1.3 -1.4 hypothetical protein compare
ABZR87_RS09895 -1.3 -1.0 DUF1841 family protein compare
ABZR87_RS23250 -1.2 -2.8 hypothetical protein compare
ABZR87_RS00875 -1.2 -3.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS08980 -1.2 -3.3 cell envelope integrity protein TolA compare
ABZR87_RS15275 -1.2 -1.9 hypothetical protein compare
ABZR87_RS22255 -1.2 -3.8 flagellar basal body P-ring protein FlgI compare
ABZR87_RS06395 -1.2 -3.7 response regulator compare
ABZR87_RS06250 -1.2 -2.2 hydroxymethylglutaryl-CoA lyase compare
ABZR87_RS14910 -1.2 -2.0 polyribonucleotide nucleotidyltransferase compare
ABZR87_RS01420 -1.1 -2.3 outer membrane protein assembly factor BamE compare
ABZR87_RS10240 -1.1 -1.5 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS23305 -1.1 -6.0 PepSY-associated TM helix domain-containing protein compare
ABZR87_RS09175 -1.1 -3.4 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
ABZR87_RS14490 -1.1 -6.6 tryptophan synthase subunit alpha compare
ABZR87_RS07605 -1.1 -2.2 D-aminoacyl-tRNA deacylase compare
ABZR87_RS10565 -1.1 -3.2 cupin domain-containing protein compare
ABZR87_RS05590 -1.1 -1.0 orotate phosphoribosyltransferase compare
ABZR87_RS07705 -1.1 -3.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS10780 -1.1 -3.0 PD-(D/E)XK nuclease family protein compare
ABZR87_RS05275 -1.1 -5.1 winged helix-turn-helix domain-containing protein compare
ABZR87_RS07060 -1.1 -7.8 RNA polymerase factor sigma-54 compare
ABZR87_RS10175 -1.1 -3.4 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS15440 -1.1 -2.6 ribonuclease G compare
ABZR87_RS19530 -1.1 -4.7 Flp pilus assembly protein CpaB compare
ABZR87_RS10980 -1.1 -0.7 tRNA-Leu compare
ABZR87_RS22485 -1.0 -5.4 FAD-dependent oxidoreductase compare
ABZR87_RS13790 -1.0 -4.9 chorismate synthase compare
ABZR87_RS21040 -1.0 -2.6 DUF2878 domain-containing protein compare
ABZR87_RS22285 -1.0 -3.7 flagellar basal body rod protein FlgC compare
ABZR87_RS12960 -1.0 -1.0 head completion/stabilization protein compare
ABZR87_RS15505 -1.0 -1.1 DNA polymerase III subunit alpha compare
ABZR87_RS01630 -1.0 -5.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
ABZR87_RS02595 -1.0 -5.3 shikimate kinase compare
ABZR87_RS10085 -1.0 -1.1 Rne/Rng family ribonuclease compare
ABZR87_RS01085 -1.0 -4.2 rhombosortase compare
ABZR87_RS04725 -1.0 -1.9 universal stress protein compare
ABZR87_RS16820 -1.0 -5.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS07470 -1.0 -5.4 TetR/AcrR family transcriptional regulator compare
ABZR87_RS11245 -1.0 -3.4 translational GTPase TypA compare
ABZR87_RS14330 -1.0 -0.9 hypothetical protein compare
ABZR87_RS18440 -1.0 -1.7 VOC family protein compare
ABZR87_RS21795 -1.0 -3.6 NUDIX domain-containing protein compare
ABZR87_RS19505 -1.0 -4.8 collagen-like triple helix repeat-containing protein compare
ABZR87_RS14970 -1.0 -2.6 DUF3106 domain-containing protein compare
ABZR87_RS22220 -1.0 -4.0 flagellar biosynthetic protein FliR compare
ABZR87_RS17650 -0.9 -3.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS09465 -0.9 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS06550 -0.9 -6.9 DMT family transporter compare
ABZR87_RS03430 -0.9 -6.2 type II secretion system minor pseudopilin GspK compare
ABZR87_RS16730 -0.9 -3.8 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS19565 -0.9 -3.7 DUF3613 domain-containing protein compare
ABZR87_RS19570 -0.9 -6.7 TadG family pilus assembly protein compare
ABZR87_RS10875 -0.9 -7.7 RNA polymerase sigma factor RpoS compare
ABZR87_RS13400 -0.9 -0.9 hypothetical protein compare
ABZR87_RS19525 -0.9 -4.8 TadE/TadG family type IV pilus assembly protein compare
ABZR87_RS17965 -0.9 -4.4 chemotaxis protein CheW compare
ABZR87_RS06265 -0.9 -4.2 biotin synthase BioB compare
ABZR87_RS17085 -0.9 -3.5 hypothetical protein compare
ABZR87_RS05320 -0.9 -6.1 efflux transporter outer membrane subunit compare
ABZR87_RS13475 -0.9 -4.0 PAS domain S-box protein compare
ABZR87_RS07625 -0.9 -1.5 Holliday junction branch migration protein RuvA compare
ABZR87_RS19535 -0.9 -5.9 type II and III secretion system protein family protein compare
ABZR87_RS22210 -0.9 -4.4 flagellar type III secretion system pore protein FliP compare
ABZR87_RS01855 -0.9 -6.0 A24 family peptidase compare
ABZR87_RS08700 -0.9 -3.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS02220 -0.9 -5.3 redox-regulated ATPase YchF compare
ABZR87_RS14890 -0.9 -0.8 preprotein translocase subunit SecG compare
ABZR87_RS22205 -0.9 -1.6 flagellar biosynthetic protein FliO compare
ABZR87_RS05065 -0.8 -3.0 tyrosine recombinase XerC compare
ABZR87_RS09710 -0.8 -2.5 tRNA-Arg compare
ABZR87_RS17950 -0.8 -4.0 flagellar motor protein MotB compare
ABZR87_RS13315 -0.8 -5.3 RluA family pseudouridine synthase compare
ABZR87_RS11015 -0.8 -2.9 amino-acid N-acetyltransferase compare
ABZR87_RS11105 -0.8 -3.0 glycerophosphodiester phosphodiesterase compare
ABZR87_RS12735 -0.8 -4.8 winged helix DNA-binding protein compare
ABZR87_RS18040 -0.8 -4.8 RNA polymerase sigma factor FliA compare
ABZR87_RS17360 -0.8 -4.5 glucan biosynthesis protein compare
ABZR87_RS02290 -0.8 -5.2 glucans biosynthesis glucosyltransferase MdoH compare
ABZR87_RS17565 -0.8 -2.3 helix-turn-helix transcriptional regulator compare
ABZR87_RS19520 -0.8 -5.6 prepilin peptidase compare
ABZR87_RS19545 -0.8 -4.3 CpaF family protein compare
ABZR87_RS22250 -0.8 -4.6 flagellar assembly peptidoglycan hydrolase FlgJ compare
ABZR87_RS19550 -0.8 -3.6 type II secretion system F family protein compare
ABZR87_RS15810 -0.8 -2.2 hypothetical protein compare
ABZR87_RS15250 -0.8 -4.1 PP2C family serine/threonine-protein phosphatase compare
ABZR87_RS21815 -0.8 -0.8 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS02325 -0.8 -2.7 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS00295 -0.8 -2.3 ABC transporter ATP-binding protein compare
ABZR87_RS11535 -0.8 -2.9 alpha/beta hydrolase compare
ABZR87_RS22015 -0.8 -1.6 hypothetical protein compare
ABZR87_RS14080 -0.8 -1.6 phosphate signaling complex protein PhoU compare
ABZR87_RS06565 -0.8 -6.3 choline dehydrogenase compare
ABZR87_RS06280 -0.8 -4.2 carboxyl transferase domain-containing protein compare
ABZR87_RS10650 -0.8 -3.6 DNA-3-methyladenine glycosylase compare
ABZR87_RS00835 -0.8 -3.2 argininosuccinate synthase compare
ABZR87_RS01425 -0.8 -3.6 ferric iron uptake transcriptional regulator compare
ABZR87_RS22265 -0.8 -3.3 flagellar basal-body rod protein FlgG compare
ABZR87_RS07675 -0.8 -4.3 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS22840 -0.8 -2.5 DUF2164 domain-containing protein compare
ABZR87_RS22245 -0.8 -5.7 flagellar hook-associated protein FlgK compare
ABZR87_RS12800 -0.8 -2.7 trigger factor compare
ABZR87_RS04945 -0.8 -1.4 DUF4390 domain-containing protein compare
ABZR87_RS19130 -0.7 -3.6 ATP-binding protein compare
ABZR87_RS08970 -0.7 -3.7 protein TolQ compare
ABZR87_RS02305 -0.7 -1.5 CDGSH iron-sulfur domain-containing protein compare
ABZR87_RS19580 -0.7 -4.6 DUF2968 domain-containing protein compare
ABZR87_RS16185 -0.7 -1.2 dCTP deaminase compare
ABZR87_RS13350 -0.7 -2.7 potassium transporter Kup compare
ABZR87_RS14135 -0.7 -3.5 transcription elongation factor GreA compare
ABZR87_RS01430 -0.7 -6.1 LysR family transcriptional regulator compare
ABZR87_RS01110 -0.7 -3.6 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS18190 -0.7 -1.4 Ivy family c-type lysozyme inhibitor compare
ABZR87_RS05315 -0.7 -6.1 efflux RND transporter permease subunit compare
ABZR87_RS19500 -0.7 -5.8 ShlB/FhaC/HecB family hemolysin secretion/activation protein compare
ABZR87_RS03460 -0.7 -5.1 type II secretion system inner membrane protein GspF compare
ABZR87_RS15225 -0.7 -2.8 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS18170 -0.7 -1.0 hypothetical protein compare
ABZR87_RS22280 -0.7 -2.5 flagellar hook assembly protein FlgD compare
ABZR87_RS21735 -0.7 -0.9 DUF2917 domain-containing protein compare
ABZR87_RS03850 -0.7 -3.9 ureidoglycolate lyase compare
ABZR87_RS22305 -0.7 -2.2 flagella synthesis protein FlgN compare
ABZR87_RS22060 -0.7 -1.9 flagellar export protein FliJ compare
ABZR87_RS03445 -0.7 -3.8 type II secretion system protein N compare
ABZR87_RS22295 -0.7 -5.4 flagellar basal body P-ring formation chaperone FlgA compare
ABZR87_RS19720 -0.7 -3.1 efflux RND transporter periplasmic adaptor subunit compare
ABZR87_RS01640 -0.7 -2.4 TlpA disulfide reductase family protein compare
ABZR87_RS05310 -0.7 -5.1 efflux RND transporter periplasmic adaptor subunit compare
ABZR87_RS12225 -0.7 -3.5 SDR family oxidoreductase compare


Specific Phenotypes

For 5 genes in this experiment

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 in Ralstonia sp. UNC404CL21Col

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 across organisms