Experiment set13IT004 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Carbon source Sucrose 10 mM

200 most important genes:

  gene name fitness t score description  
AO356_21405 -6.0 -4.1 3-isopropylmalate dehydratase compare
AO356_08635 -5.2 -10.5 ATP phosphoribosyltransferase regulatory subunit compare
AO356_21440 -5.1 -7.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_28580 -5.0 -3.5 sugar ABC transporter permease compare
AO356_06970 -4.8 -8.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_05215 -4.8 -8.0 glucokinase compare
AO356_05160 -4.7 -8.5 glucose-6-phosphate dehydrogenase compare
AO356_18275 -4.7 -12.5 ornithine carbamoyltransferase compare
AO356_16180 -4.6 -14.0 ketol-acid reductoisomerase compare
AO356_13250 -4.5 -9.5 dihydroxy-acid dehydratase compare
AO356_09375 -4.4 -23.0 glutamate synthase compare
AO356_21415 -4.3 -10.8 3-isopropylmalate dehydrogenase compare
AO356_18325 -4.3 -11.5 argininosuccinate synthase compare
AO356_12525 -4.3 -8.7 acetylglutamate kinase compare
AO356_14435 -4.3 -8.1 anthranilate phosphoribosyltransferase compare
AO356_13405 -4.3 -9.5 methionine biosynthesis protein MetW compare
AO356_14420 -4.2 -16.0 anthranilate synthase compare
AO356_09810 -4.2 -2.9 imidazole glycerol phosphate synthase subunit HisH compare
AO356_09525 -4.2 -7.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_14430 -4.1 -8.8 anthranilate synthase compare
AO356_12520 -4.1 -2.8 orotate phosphoribosyltransferase compare
AO356_13410 -4.0 -13.7 homoserine O-acetyltransferase compare
AO356_09520 -4.0 -6.1 phosphoribosyl-AMP cyclohydrolase compare
AO356_28585 -4.0 -5.4 ABC transporter conserved
AO356_09800 -4.0 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_21400 -3.9 -7.9 isopropylmalate isomerase compare
AO356_28570 -3.9 -10.1 ABC transporter substrate-binding protein conserved
AO356_08735 -3.9 -14.2 phosphoserine phosphatase compare
AO356_21435 -3.9 -5.9 pseudouridine synthase compare
AO356_16175 -3.9 -7.5 acetolactate synthase 3 regulatory subunit compare
AO356_28575 -3.8 -5.7 ABC transporter permease conserved
AO356_16170 -3.8 -8.1 acetolactate synthase 3 catalytic subunit compare
AO356_06965 -3.8 -10.3 histidinol dehydrogenase compare
AO356_14440 -3.8 -5.2 indole-3-glycerol-phosphate synthase compare
AO356_09370 -3.7 -12.4 glutamate synthase compare
AO356_28110 -3.7 -9.5 ATPase compare
AO356_10910 -3.7 -8.9 tryptophan synthase subunit alpha compare
AO356_06550 -3.6 -9.5 2-isopropylmalate synthase compare
AO356_09815 -3.6 -7.6 imidazoleglycerol-phosphate dehydratase compare
AO356_10915 -3.6 -7.1 tryptophan synthase subunit beta compare
AO356_13085 -3.5 -9.8 N-acetylglutamate synthase compare
AO356_19050 -3.5 -2.4 cysteine synthase compare
AO356_21470 -3.4 -5.6 O-succinylhomoserine sulfhydrylase compare
AO356_13605 -3.4 -8.4 5,10-methylenetetrahydrofolate reductase compare
AO356_19060 -3.3 -15.3 (p)ppGpp synthetase compare
AO356_16075 -3.3 -3.2 Fis family transcriptional regulator compare
AO356_12020 -3.2 -13.6 pyruvate carboxylase subunit A compare
AO356_00555 -3.2 -9.5 sulfite reductase compare
AO356_07390 -3.2 -2.1 polyribonucleotide nucleotidyltransferase compare
AO356_28590 -3.1 -5.2 sucrose alpha-glucosidase (EC 3.2.1.48) (from data) conserved
AO356_14295 -3.1 -2.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_05670 -3.1 -2.1 recombinase RecA compare
AO356_15815 -3.0 -2.2 gamma-glutamyl kinase compare
AO356_19795 -2.9 -4.6 glycerol-3-phosphate dehydrogenase compare
AO356_22200 -2.9 -8.0 sirohydrochlorin ferrochelatase compare
AO356_10340 -2.9 -11.4 phosphoserine phosphatase compare
AO356_12025 -2.8 -12.5 pyruvate carboxylase subunit B compare
AO356_10300 -2.8 -4.0 3-phosphoglycerate dehydrogenase compare
AO356_00560 -2.8 -3.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_00355 -2.7 -6.3 chemotaxis protein CheY compare
AO356_20175 -2.7 -1.8 3-oxoacyl-ACP synthase compare
AO356_05225 -2.7 -5.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_24845 -2.7 -3.5 ATPase compare
AO356_21465 -2.7 -3.1 amidophosphoribosyltransferase compare
AO356_19045 -2.7 -9.5 chemotaxis protein CheY compare
AO356_28025 -2.6 -7.8 aldehyde dehydrogenase compare
AO356_12780 -2.6 -6.8 argininosuccinate lyase compare
AO356_02175 -2.6 -7.5 transaldolase compare
AO356_02105 -2.6 -2.1 hypothetical protein compare
AO356_19085 -2.5 -8.1 phosphoribosylglycinamide formyltransferase compare
AO356_06575 -2.5 -3.6 outer membrane protein assembly factor BamB compare
AO356_09795 -2.4 -1.4 imidazole glycerol phosphate synthase subunit HisF compare
AO356_10585 -2.4 -10.5 hypothetical protein compare
AO356_16095 -2.3 -6.6 molecular chaperone DnaK compare
AO356_28565 -2.3 -5.3 porin conserved
AO356_16185 -2.3 -4.1 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_18255 -2.2 -10.3 glycerol uptake facilitator GlpF compare
AO356_17345 -2.2 -2.9 molybdenum cofactor biosynthesis protein MoaE compare
AO356_30345 -2.2 -5.2 IclR family transcriptional regulator compare
AO356_21410 -2.2 -4.2 SAM-dependent methyltransferase compare
AO356_15165 -2.1 -2.1 protein cII compare
AO356_01745 -2.1 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_21330 -2.0 -8.0 aromatic amino acid aminotransferase compare
AO356_17830 -2.0 -3.4 pyruvate kinase compare
AO356_28710 -2.0 -2.3 aldehyde dehydrogenase compare
AO356_02190 -2.0 -7.6 hypothetical protein compare
AO356_21125 -2.0 -2.6 cyclic peptide transporter compare
AO356_18730 -2.0 -8.4 arginine N-succinyltransferase compare
AO356_07005 -1.9 -2.3 ABC transporter ATP-binding protein compare
AO356_18020 -1.9 -3.2 ATP-dependent DNA helicase RuvA compare
AO356_20470 -1.9 -2.6 hypothetical protein compare
AO356_17950 -1.9 -8.0 histidine kinase compare
AO356_16505 -1.9 -2.6 molybdopterin-synthase adenylyltransferase compare
AO356_16050 -1.9 -2.5 glucose-6-phosphate isomerase compare
AO356_19285 -1.9 -1.4 tRNA-Asp compare
AO356_07910 -1.9 -1.7 exodeoxyribonuclease V subunit alpha compare
AO356_02290 -1.9 -2.5 TetR family transcriptional regulator compare
AO356_11315 -1.9 -1.2 shikimate dehydrogenase compare
AO356_07915 -1.8 -2.1 exodeoxyribonuclease V subunit beta compare
AO356_06385 -1.8 -3.7 recombinase XerD compare
AO356_08585 -1.8 -2.9 50S ribosomal protein L9 compare
AO356_11025 -1.8 -4.6 transcriptional regulator PhoU compare
AO356_19520 -1.8 -3.9 isochorismatase compare
AO356_01750 -1.8 -2.3 ATP-dependent Clp protease proteolytic subunit compare
AO356_17520 -1.7 -1.1 phosphoribosylformylglycinamidine synthase compare
AO356_19090 -1.7 -1.6 phosphoribosylaminoimidazole synthetase compare
AO356_22095 -1.7 -4.4 cupin compare
AO356_28115 -1.7 -5.5 GfdT protein compare
AO356_08905 -1.7 -1.9 glycosyl transferase compare
AO356_00880 -1.7 -1.5 integration host factor subunit alpha compare
AO356_12005 -1.6 -8.5 transcriptional regulator compare
AO356_08875 -1.6 -2.9 toluene tolerance protein compare
AO356_06990 -1.6 -5.0 toluene tolerance protein compare
AO356_06065 -1.5 -1.5 ArsC family transcriptional regulator compare
AO356_18000 -1.5 -1.5 FmdB family transcriptional regulator compare
AO356_12735 -1.5 -2.1 diaminopimelate epimerase compare
AO356_11055 -1.5 -2.6 long-chain acyl-CoA thioester hydrolase compare
AO356_02800 -1.5 -2.8 transporter compare
AO356_10345 -1.5 -5.5 RNA pyrophosphohydrolase compare
AO356_15140 -1.5 -2.6 homoserine dehydrogenase compare
AO356_02250 -1.5 -6.0 pyridine nucleotide-disulfide oxidoreductase compare
AO356_15925 -1.5 -4.2 ribosomal large subunit pseudouridine synthase D compare
AO356_08645 -1.5 -4.7 hypothetical protein compare
AO356_12380 -1.4 -5.6 ATP-dependent DNA helicase RecG compare
AO356_02205 -1.4 -3.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_08660 -1.4 -6.3 tRNA dimethylallyltransferase compare
AO356_20830 -1.4 -2.5 phosphoadenosine phosphosulfate reductase compare
AO356_12015 -1.4 -6.2 LysR family transcriptional regulator compare
AO356_12715 -1.3 -3.1 hypothetical protein compare
AO356_14500 -1.3 -5.5 anhydro-N-acetylmuramic acid kinase compare
AO356_17065 -1.3 -1.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_04575 -1.3 -5.8 RNA polymerase subunit sigma compare
AO356_01985 -1.3 -1.7 head completion/stabilization protein compare
AO356_17485 -1.3 -3.3 elongation factor 4 compare
AO356_27100 -1.3 -3.6 hypothetical protein compare
AO356_10185 -1.3 -3.9 glutamate--cysteine ligase compare
AO356_03665 -1.3 -2.1 flagellar hook-length control protein FliK compare
AO356_20915 -1.3 -3.5 thiamine pyrophosphate-binding protein compare
AO356_18025 -1.3 -2.1 ATP-dependent DNA helicase RuvB compare
AO356_01555 -1.2 -5.0 acyl-CoA dehydrogenase compare
AO356_28595 -1.2 -1.9 transcriptional regulator compare
AO356_06005 -1.2 -3.2 zinc metallopeptidase RseP compare
AO356_19420 -1.2 -0.8 septum formation inhibitor compare
AO356_03455 -1.2 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO356_17985 -1.2 -3.9 cold-shock protein compare
AO356_22125 -1.2 -3.8 isocitrate dehydrogenase compare
AO356_04275 -1.2 -1.2 3-oxoacyl-ACP synthase compare
AO356_08640 -1.2 -4.1 membrane protease HflC compare
AO356_07600 -1.2 -2.4 hypothetical protein compare
AO356_21655 -1.1 -1.9 LysR family transcriptional regulator compare
AO356_13475 -1.1 -3.1 glutathione synthetase compare
AO356_06605 -1.1 -2.1 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO356_25505 -1.1 -1.3 hypothetical protein compare
AO356_22795 -1.1 -0.8 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_28160 -1.1 -2.0 hypothetical protein compare
AO356_15325 -1.1 -1.4 hypothetical protein compare
AO356_06935 -1.1 -1.8 glycerate dehydrogenase compare
AO356_02310 -1.1 -2.0 PasA protein compare
AO356_04560 -1.1 -1.8 serine peptidase compare
AO356_12900 -1.1 -2.8 exopolyphosphatase compare
AO356_16070 -1.1 -3.6 poly(A) polymerase compare
AO356_25395 -1.1 -1.5 fimbrial assembly protein FimA compare
AO356_07920 -1.1 -3.8 exodeoxyribonuclease V subunit gamma compare
AO356_15295 -1.1 -3.1 nicotinate-nucleotide adenylyltransferase compare
AO356_02335 -1.1 -1.9 hypothetical protein compare
AO356_07495 -1.0 -2.5 molecular chaperone DnaJ compare
AO356_27180 -1.0 -2.3 hypothetical protein compare
AO356_02285 -1.0 -4.4 beta-hexosaminidase compare
AO356_28610 -1.0 -1.2 AraC family transcriptional regulator compare
AO356_14155 -1.0 -4.3 dethiobiotin synthetase compare
AO356_18735 -1.0 -3.7 arginine N-succinyltransferase compare
AO356_10920 -1.0 -5.1 LysR family transcriptional regulator compare
AO356_02460 -1.0 -1.2 hypothetical protein compare
AO356_24755 -1.0 -1.0 type II secretion system protein GspH compare
AO356_09760 -1.0 -2.7 glutaredoxin compare
AO356_17330 -1.0 -4.4 ATPase conserved
AO356_11060 -1.0 -5.6 aldose epimerase compare
AO356_27925 -1.0 -2.2 MarR family transcriptional regulator compare
AO356_07480 -1.0 -1.4 carbamoyl phosphate synthase large subunit compare
AO356_26360 -1.0 -1.5 enoyl-CoA hydratase compare
AO356_08275 -1.0 -2.1 precorrin isomerase compare
AO356_25535 -1.0 -1.4 hypothetical protein compare
AO356_27585 -1.0 -2.8 AcrR family transcriptional regulator compare
AO356_18250 -1.0 -5.1 glycerol kinase compare
AO356_28695 -1.0 -1.5 IclR family transcriptional regulator compare
AO356_00605 -1.0 -2.2 TetR family transcriptional regulator compare
AO356_05995 -1.0 -2.5 hypothetical protein compare
AO356_21260 -0.9 -1.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_29420 -0.9 -1.7 1-aminocyclopropane-1-carboxylate deaminase compare
AO356_21460 -0.9 -2.4 colicin V production CvpA compare
AO356_28845 -0.9 -1.3 ferrichrome ABC transporter compare
AO356_14140 -0.9 -4.9 8-amino-7-oxononanoate synthase compare
AO356_10075 -0.9 -3.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_00125 -0.9 -2.0 hypothetical protein compare
AO356_27215 -0.9 -1.2 hypothetical protein compare
AO356_25045 -0.9 -1.4 protein nirG compare
AO356_06995 -0.9 -3.5 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_17335 -0.9 -3.3 molybdenum cofactor biosynthesis protein MoaC compare
AO356_13345 -0.9 -1.9 cell division ATP-binding protein FtsE compare
AO356_16880 -0.9 -2.3 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N2C3

For carbon source Sucrose across organisms