Experiment set13IT004 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Carbon source Sucrose 10 mM

200 most detrimental genes:

  gene name fitness t score description  
AO356_11030 +2.6 19.5 phosphate ABC transporter ATP-binding protein compare
AO356_11040 +2.4 22.2 phosphate ABC transporter permease compare
AO356_11045 +2.1 16.3 phosphate-binding protein compare
AO356_11035 +2.0 11.0 phosphate ABC transporter permease compare
AO356_21790 +1.5 3.1 sulfonate ABC transporter ATP-binding protein compare
AO356_28300 +1.2 1.6 hypothetical protein compare
AO356_14920 +1.2 2.5 hypothetical protein compare
AO356_19210 +1.1 4.4 hypothetical protein compare
AO356_03780 +1.1 2.1 flagellar motor switch protein compare
AO356_03770 +1.1 3.4 flagellar biosynthesis protein flip compare
AO356_18150 +1.0 2.7 hypothetical protein compare
AO356_08910 +1.0 2.9 carbamoyltransferase compare
AO356_17035 +1.0 4.2 ATPase compare
AO356_25720 +0.9 1.4 polyamine ABC transporter permease compare
AO356_25775 +0.9 4.0 peptide synthetase compare
AO356_09560 +0.9 7.2 glucosyltransferase MdoH compare
AO356_18370 +0.9 2.6 NADH:quinone oxidoreductase compare
AO356_29935 +0.9 3.9 NADPH:quinone oxidoreductase compare
AO356_22995 +0.9 1.9 ArsR family transcriptional regulator compare
AO356_09565 +0.9 4.7 glucan biosynthesis protein G compare
AO356_01015 +0.9 2.0 peptidylprolyl isomerase compare
AO356_01940 +0.9 1.6 hypothetical protein compare
AO356_28910 +0.9 1.7 LysR family transcriptional regulator compare
AO356_26630 +0.9 2.2 XshC-Cox1 family protein compare
AO356_12640 +0.8 1.3 cytochrome C compare
AO356_18920 +0.8 6.1 flagellar basal-body rod protein FlgC compare
AO356_18245 +0.8 3.9 DeoR family transcriptional regulator compare
AO356_03795 +0.8 6.1 flagellar hook-length control protein compare
AO356_01915 +0.8 1.3 hypothetical protein compare
AO356_28475 +0.8 2.0 hypothetical protein compare
AO356_00920 +0.8 1.5 cold-shock protein compare
AO356_04570 +0.8 3.3 RNA polymerase subunit sigma compare
AO356_22520 +0.8 2.3 glyoxalase compare
AO356_03825 +0.8 3.6 flagellar assembly protein FliH compare
AO356_03835 +0.8 6.1 flagellar M-ring protein FliF compare
AO356_05075 +0.8 1.5 GCN5 family acetyltransferase compare
AO356_03730 +0.8 5.4 flagellar biosynthesis sigma factor compare
AO356_15520 +0.8 2.4 AsnC family transcriptional regulator compare
AO356_03925 +0.8 3.9 flagellar basal-body rod protein FlgG compare
AO356_03785 +0.8 5.3 flagellar motor switch protein FliM compare
AO356_27995 +0.8 1.5 thioredoxin reductase compare
AO356_03915 +0.8 3.8 flagellar biosynthesis protein FlgI compare
AO356_27540 +0.8 2.7 hemolysin secretion protein D compare
AO356_05440 +0.8 2.3 hypothetical protein compare
AO356_21430 +0.8 5.4 peptidoglycan-binding protein compare
AO356_03855 +0.7 5.5 AAA family ATPase compare
AO356_29795 +0.7 1.3 amino acid transporter compare
AO356_11420 +0.7 4.4 histidine kinase compare
AO356_03840 +0.7 3.6 flagellar hook-basal body protein FliE compare
AO356_28445 +0.7 1.2 decarboxylase compare
AO356_02440 +0.7 4.6 cytochrome C oxidase Cbb3 compare
AO356_11585 +0.7 2.9 lipid A biosynthesis lauroyl acyltransferase compare
AO356_20845 +0.7 3.1 alpha-L-glutamate ligase compare
AO356_13485 +0.7 1.3 chemotaxis protein CheY compare
AO356_21220 +0.7 1.8 peptide ABC transporter substrate-binding protein compare
AO356_02080 +0.7 2.8 oxidoreductase compare
AO356_03820 +0.7 5.6 flagellar protein export ATPase FliI compare
AO356_16320 +0.7 1.4 hypothetical protein compare
AO356_18160 +0.7 2.5 glycine cleavage system protein T compare
AO356_18900 +0.7 4.0 flagellar biosynthesis protein FlgA compare
AO356_00615 +0.7 2.1 choline ABC transporter ATP-binding protein compare
AO356_24705 +0.7 5.1 NAD-glutamate dehydrogenase compare
AO356_03075 +0.7 2.9 MarR family transcriptional regulator compare
AO356_04565 +0.7 4.7 RNA polymerase subunit sigma compare
AO356_26210 +0.7 0.9 histidine kinase compare
AO356_02430 +0.7 3.3 cytochrome C oxidase Cbb3 compare
AO356_28645 +0.7 1.5 AraC family transcriptional regulator compare
AO356_03760 +0.7 3.2 flagellar biosynthetic protein FliR compare
AO356_26390 +0.7 1.3 hypothetical protein compare
AO356_05055 +0.7 3.4 permease DsdX compare
AO356_26635 +0.7 1.6 hydrolase compare
AO356_15750 +0.7 1.3 hypothetical protein compare
AO356_05060 +0.7 1.6 gluconokinase compare
AO356_05795 +0.7 2.8 phage tail protein compare
AO356_26920 +0.7 3.1 alpha/beta hydrolase compare
AO356_02425 +0.6 4.2 cytochrome C oxidase Cbb3 compare
AO356_05550 +0.6 1.4 DNA base-flipping protein YbaZ compare
AO356_18930 +0.6 5.2 flagellar biosynthesis protein FlgE compare
AO356_22790 +0.6 3.1 hypothetical protein compare
AO356_13885 +0.6 3.0 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO356_03755 +0.6 4.7 flagellar biosynthetic protein FlhB compare
AO356_12140 +0.6 1.9 type VI secretion protein compare
AO356_13685 +0.6 1.6 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_03790 +0.6 4.2 flagellar basal body protein FliL compare
AO356_03910 +0.6 3.6 flagellar biosynthesis protein FlgJ compare
AO356_27685 +0.6 2.2 ABC transporter ATP-binding protein compare
AO356_21205 +0.6 2.3 mechanosensitive ion channel protein MscS compare
AO356_03920 +0.6 3.5 flagellar basal body L-ring protein compare
AO356_25260 +0.6 0.9 iron transporter compare
AO356_10145 +0.6 1.1 molecular chaperone Hsp33 compare
AO356_15160 +0.6 1.4 hypothetical protein compare
AO356_23075 +0.6 1.9 hypothetical protein compare
AO356_29780 +0.6 3.1 sarcosine oxidase subunit beta compare
AO356_12755 +0.6 2.1 nucleoside diphosphate kinase regulator compare
AO356_02735 +0.6 1.7 type III secretion regulator InvE compare
AO356_14105 +0.6 1.0 glycine cleavage system protein R compare
AO356_04345 +0.6 2.2 hypothetical protein compare
AO356_09730 +0.6 3.3 nitrogen regulation protein NR(I) compare
AO356_00915 +0.6 3.6 hypothetical protein compare
AO356_18720 +0.6 4.0 AraC family transcriptional regulator compare
AO356_06615 +0.6 0.8 FeS assembly protein IscX compare
AO356_26395 +0.6 0.9 hypothetical protein compare
AO356_16350 +0.6 2.1 hypothetical protein compare
AO356_00965 +0.6 3.4 sugar ABC transporter ATP-binding protein compare
AO356_27505 +0.6 1.2 transcriptional regulator compare
AO356_24215 +0.6 1.7 chemotaxis protein CheC compare
AO356_08385 +0.6 1.3 urease subunit beta compare
AO356_27750 +0.6 2.6 dienelactone hydrolase compare
AO356_03815 +0.6 3.6 flagellar biogenesis protein compare
AO356_03830 +0.6 2.9 flagellar motor switch protein FliG compare
AO356_25255 +0.6 1.7 FTR1 family iron permease compare
AO356_18925 +0.6 3.9 flagellar biosynthesis protein FlgD compare
AO356_27380 +0.6 2.3 chemotaxis protein compare
AO356_09300 +0.6 0.9 type II secretory protein PulM compare
AO356_03865 +0.6 4.0 flagellar export chaperone FliS compare
AO356_03880 +0.6 3.9 flagellin compare
AO356_27775 +0.6 1.9 UDP pyrophosphate phosphatase compare
AO356_03745 +0.6 4.4 flagellar biosynthesis protein FlhA compare
AO356_30410 +0.6 2.3 pyrroloquinoline quinone biosynthesis protein PqqB compare
AO356_24690 +0.6 2.6 AP endonuclease compare
AO356_24310 +0.6 2.3 type IV secretion protein Rhs compare
AO356_01275 +0.6 2.6 GntR family transcriptional regulator compare
AO356_25130 +0.6 1.9 hypothetical protein compare
AO356_26895 +0.5 1.1 2Fe-2S ferredoxin compare
AO356_22565 +0.5 1.6 hypothetical protein compare
AO356_09380 +0.5 4.4 cell division protein compare
AO356_28255 +0.5 1.0 class III aminotransferase compare
AO356_26175 +0.5 2.1 methyltransferase compare
AO356_25485 +0.5 1.9 aldehyde dehydrogenase compare
AO356_25520 +0.5 2.7 3-oxoacyl-ACP reductase compare
AO356_29165 +0.5 1.2 glyoxalase compare
AO356_03905 +0.5 3.4 flagellar biosynthesis protein FlgK compare
AO356_28355 +0.5 2.5 hypothetical protein compare
AO356_06415 +0.5 2.2 cytochrome C assembly protein compare
AO356_06760 +0.5 2.3 transcriptional antiterminator compare
AO356_29100 +0.5 1.2 epimerase compare
AO356_05785 +0.5 1.4 phage tail protein compare
AO356_03900 +0.5 4.1 flagellar biosynthesis protein FlgL compare
AO356_03870 +0.5 3.9 flagellar hook protein FliD compare
AO356_27870 +0.5 2.5 ATPase compare
AO356_15435 +0.5 1.9 hydrogenase compare
AO356_29835 +0.5 1.2 LuxR family transcriptional regulator compare
AO356_26595 +0.5 2.2 antibiotic biosynthesis monooxygenase compare
AO356_20680 +0.5 2.7 toxin-antitoxin toxin family protein compare
AO356_20520 +0.5 1.1 oxidoreductase compare
AO356_14020 +0.5 0.7 hypothetical protein compare
AO356_26070 +0.5 2.3 peptide ABC transporter substrate-binding protein compare
AO356_08930 +0.5 1.2 heptose kinase compare
AO356_03680 +0.5 4.0 chemotaxis protein compare
AO356_07385 +0.5 0.6 tRNA-Thr compare
AO356_19300 +0.5 4.1 peptidylprolyl isomerase compare
AO356_24555 +0.5 0.9 hypothetical protein compare
AO356_01270 +0.5 2.5 (Fe-S)-binding protein compare
AO356_24965 +0.5 1.2 GntR family transcriptional regulator compare
AO356_28245 +0.5 1.5 alpha/beta hydrolase compare
AO356_03215 +0.5 4.0 hypothetical protein compare
AO356_03130 +0.5 2.2 hypothetical protein compare
AO356_08755 +0.5 1.4 aspartyl protease compare
AO356_26190 +0.5 1.5 NAD(P)H dehydrogenase compare
AO356_21175 +0.5 1.7 RNA polymerase subunit sigma compare
AO356_14075 +0.5 0.7 amino acid ABC transporter substrate-binding protein compare
AO356_10150 +0.5 2.1 RNA-binding protein compare
AO356_28550 +0.5 2.4 bifunctional D-altronate/D-mannonate dehydratase compare
AO356_21515 +0.5 0.3 antitoxin compare
AO356_21575 +0.5 2.0 GTP pyrophosphokinase compare
AO356_14540 +0.5 1.1 biotin--protein ligase compare
AO356_26380 +0.5 1.2 UDP-glucose 6-dehydrogenase compare
AO356_26650 +0.5 1.8 4-chlorobenzoate--CoA ligase compare
AO356_29735 +0.5 1.4 hypothetical protein compare
AO356_19240 +0.5 0.6 cupin compare
AO356_15275 +0.5 1.9 ATP-dependent protease compare
AO356_28415 +0.5 2.1 hypothetical protein compare
AO356_13950 +0.5 3.1 ferredoxin compare
AO356_26040 +0.5 0.7 hypothetical protein compare
AO356_26985 +0.5 3.0 histidine kinase compare
AO356_23395 +0.5 1.5 ABC transporter permease compare
AO356_26970 +0.5 1.7 sodium:proton antiporter compare
AO356_21585 +0.5 1.6 branched-chain amino acid transporter compare
AO356_27915 +0.5 1.0 salicylaldehyde dehydrogenase compare
AO356_22760 +0.5 2.0 alpha-ketoglutarate-dependent dioxygenase compare
AO356_26350 +0.5 0.5 acetyl-CoA acetyltransferase compare
AO356_16395 +0.5 1.0 chemotaxis protein compare
AO356_29200 +0.5 1.5 sugar ABC transporter substrate-binding protein compare
AO356_22695 +0.5 1.4 glycerol-3-phosphatase compare
AO356_19565 +0.5 1.1 hypothetical protein compare
AO356_00705 +0.5 1.6 histidine kinase compare
AO356_20975 +0.5 1.7 hypothetical protein compare
AO356_02635 +0.5 1.3 pathogenicity island 1 effector protein compare
AO356_26095 +0.5 0.9 Rieske (2Fe-2S) protein compare
AO356_02675 +0.5 1.6 cell invasion protein compare
AO356_08925 +0.5 2.1 lipopolysaccharide kinase compare
AO356_14980 +0.5 3.0 iron-hydroxamate ABC transporter substrate-binding protein compare
AO356_04085 +0.5 1.9 hypothetical protein compare
AO356_27515 +0.5 2.1 4-aminobutyrate aminotransferase compare
AO356_13655 +0.5 1.9 hypothetical protein compare
AO356_05245 +0.5 1.5 heme oxygenase compare
AO356_12300 +0.5 1.2 type VI secretion protein compare
AO356_21115 +0.5 1.3 alpha/beta hydrolase compare
AO356_16975 +0.5 2.8 cytochrome C oxidase compare
AO356_18755 +0.5 2.4 succinylglutamate desuccinylase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N2C3

For carbon source Sucrose across organisms