Experiment set13IT004 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x

200 most important genes:

  gene name fitness t score description  
BWI76_RS26460 -5.6 -3.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS06680 -4.7 -1.3 hypothetical protein compare
BWI76_RS01115 -4.7 -2.9 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS19840 -4.4 -1.1 hypothetical protein compare
BWI76_RS09625 -4.3 -1.1 hypothetical protein compare
BWI76_RS11300 -3.8 -1.0 cupin compare
BWI76_RS08535 -3.8 -1.7 translocation protein TolB compare
BWI76_RS20155 -3.7 -2.0 NADH-quinone oxidoreductase subunit I compare
BWI76_RS00965 -3.7 -1.0 acetolactate synthase 2 small subunit compare
BWI76_RS09645 -3.6 -0.9 thioredoxin-disulfide reductase compare
BWI76_RS00720 -3.5 -1.8 DNA-binding response regulator compare
BWI76_RS04525 -3.5 -1.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS16200 -3.5 -1.8 NAD(P) transhydrogenase subunit beta compare
BWI76_RS21310 -3.4 -0.9 DNA repair protein RecO compare
BWI76_RS20380 -3.3 -0.8 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS26455 -3.0 -2.3 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS01350 -2.9 -0.8 NAD(P)H-flavin reductase compare
BWI76_RS20360 -2.9 -0.7 cell division protein DedD compare
BWI76_RS09615 -2.9 -2.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS01800 -2.9 -1.9 glucose-6-phosphate isomerase compare
BWI76_RS08525 -2.9 -2.5 colicin transporter compare
BWI76_RS00875 -2.8 -3.1 DNA-binding transcriptional regulator FabR compare
BWI76_RS13545 -2.7 -1.2 N-acetyltransferase compare
BWI76_RS07820 -2.7 -1.7 S-methyl-5-thioribose kinase compare
BWI76_RS17980 -2.6 -5.2 RNA chaperone ProQ compare
BWI76_RS16485 -2.6 -0.9 ribonuclease T compare
BWI76_RS14005 -2.6 -1.3 TetR family transcriptional regulator compare
BWI76_RS01210 -2.5 -1.1 tyrosine recombinase XerC compare
BWI76_RS07465 -2.4 -0.8 TetR family transcriptional regulator compare
BWI76_RS08210 -2.4 -0.9 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS05465 -2.4 -1.2 amidohydrolase compare
BWI76_RS13820 -2.3 -1.3 hypothetical protein compare
BWI76_RS04160 -2.2 -2.4 phosphoserine phosphatase compare
BWI76_RS15635 -2.2 -5.8 hypothetical protein compare
BWI76_RS00400 -2.2 -1.0 glutamine synthetase compare
BWI76_RS13445 -2.2 -1.6 alpha/beta hydrolase compare
BWI76_RS10745 -2.2 -1.0 hypothetical protein compare
BWI76_RS24885 -2.2 -0.9 PTS galactitol transporter subunit IIB compare
BWI76_RS05450 -2.2 -0.7 ribonuclease HI compare
BWI76_RS25285 -2.1 -1.1 HPr family phosphocarrier protein compare
BWI76_RS06520 -2.1 -4.7 trigger factor compare
BWI76_RS21690 -2.1 -1.9 hypothetical protein compare
BWI76_RS13250 -2.1 -1.4 cytochrome b561 compare
BWI76_RS21370 -2.1 -0.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS08530 -2.0 -1.2 protein TolA compare
BWI76_RS00355 -2.0 -1.7 DNA polymerase I compare
BWI76_RS05835 -2.0 -1.5 gamma-glutamyl-phosphate reductase compare
BWI76_RS17720 -2.0 -0.5 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS19935 -1.9 -1.5 hypothetical protein compare
BWI76_RS24400 -1.9 -3.5 outer membrane channel protein TolC compare
BWI76_RS16895 -1.9 -1.2 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS14300 -1.9 -1.8 hypothetical protein compare
BWI76_RS22950 -1.9 -2.1 membrane protein compare
BWI76_RS15000 -1.9 -3.2 amino acid ABC transporter ATP-binding protein compare
BWI76_RS22420 -1.8 -1.9 LacI family transcriptional regulator compare
BWI76_RS24740 -1.8 -2.3 GntR family transcriptional regulator compare
BWI76_RS17975 -1.8 -4.4 tail-specific protease compare
BWI76_RS19375 -1.8 -1.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS01095 -1.8 -1.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS24275 -1.8 -2.6 biopolymer transport protein ExbD compare
BWI76_RS15110 -1.7 -5.4 putative excinuclease ABC subunit A compare
BWI76_RS12265 -1.7 -3.6 hypothetical protein compare
BWI76_RS01220 -1.7 -3.1 DNA-dependent helicase II compare
BWI76_RS08520 -1.7 -1.1 colicin transporter TolQ compare
BWI76_RS15535 -1.7 -2.8 hypothetical protein compare
BWI76_RS09825 -1.7 -4.4 envelope biogenesis factor ElyC compare
BWI76_RS17300 -1.7 -0.6 tRNA-Tyr compare
BWI76_RS05015 -1.7 -0.9 transcriptional regulator compare
BWI76_RS25920 -1.7 -1.0 peptidylprolyl isomerase compare
BWI76_RS09755 -1.7 -2.5 phosphoserine transaminase compare
BWI76_RS02530 -1.7 -0.9 tRNA dimethylallyltransferase compare
BWI76_RS21070 -1.7 -1.1 outer membrane protein assembly factor BamB compare
BWI76_RS07645 -1.6 -1.0 short-chain dehydrogenase/reductase compare
BWI76_RS01110 -1.6 -3.1 TDP-fucosamine acetyltransferase compare
BWI76_RS02815 -1.6 -1.2 fructose-bisphosphatase class I compare
BWI76_RS14620 -1.6 -1.5 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase compare
BWI76_RS06535 -1.6 -3.0 endopeptidase La compare
BWI76_RS01135 -1.6 -2.9 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS09760 -1.6 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS26470 -1.6 -2.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS08330 -1.6 -1.3 hypothetical protein compare
BWI76_RS16375 -1.6 -1.7 electron transport complex subunit G compare
BWI76_RS19770 -1.6 -1.0 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS26095 -1.6 -0.5 shikimate kinase compare
BWI76_RS01125 -1.6 -4.4 4-alpha-L-fucosyltransferase compare
BWI76_RS21580 -1.5 -0.7 SsrA-binding protein compare
BWI76_RS20640 -1.5 -2.9 cysteine synthase A compare
BWI76_RS02550 -1.5 -2.3 protease modulator HflC compare
BWI76_RS04645 -1.5 -2.6 3-dehydroquinase compare
BWI76_RS10935 -1.5 -4.3 glucan biosynthesis glucosyltransferase H compare
BWI76_RS12420 -1.5 -0.8 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS01795 -1.5 -2.1 hypothetical protein compare
BWI76_RS11430 -1.5 -0.9 lipoprotein compare
BWI76_RS23320 -1.5 -1.3 hypothetical protein compare
BWI76_RS26390 -1.4 -4.7 cell division protein FtsX compare
BWI76_RS24900 -1.4 -1.2 DeoR family transcriptional regulator compare
BWI76_RS27875 -1.4 -1.3 membrane protein compare
BWI76_RS19130 -1.4 -3.6 3-methyladenine DNA glycosylase 2 compare
BWI76_RS19670 -1.3 -2.0 S-formylglutathione hydrolase compare
BWI76_RS20135 -1.3 -2.9 NADH-quinone oxidoreductase subunit M compare
BWI76_RS12290 -1.3 -3.6 hypothetical protein compare
BWI76_RS12090 -1.3 -1.5 HNH endonuclease compare
BWI76_RS11255 -1.3 -1.2 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS21680 -1.3 -3.1 antitoxin of the YeeV-YeeU toxin-antitoxin system compare
BWI76_RS19200 -1.3 -4.0 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS15835 -1.3 -1.5 hypothetical protein compare
BWI76_RS09190 -1.3 -1.8 hypothetical protein compare
BWI76_RS09455 -1.3 -2.6 YbjN domain-containing protein compare
BWI76_RS00180 -1.3 -0.5 F0F1 ATP synthase subunit epsilon compare
BWI76_RS13435 -1.3 -1.0 hypothetical protein compare
BWI76_RS26395 -1.3 -2.9 cell division protein FtsE compare
BWI76_RS18815 -1.3 -1.4 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS12275 -1.3 -3.5 hypothetical protein compare
BWI76_RS24600 -1.3 -1.8 dihydroxyacetone kinase compare
BWI76_RS01185 -1.3 -0.8 adenylate cyclase compare
BWI76_RS25600 -1.3 -0.6 tRNA-Thr compare
BWI76_RS24075 -1.2 -2.0 glutathione synthase compare
BWI76_RS21350 -1.2 -2.3 anti-RNA polymerase sigma factor SigE compare
BWI76_RS07785 -1.2 -1.2 transcriptional regulator compare
BWI76_RS01200 -1.2 -0.7 diaminopimelate epimerase compare
BWI76_RS12320 -1.2 -3.8 hypothetical protein compare
BWI76_RS01105 -1.2 -2.8 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS03665 -1.2 -1.7 ABC transporter ATP-binding protein compare
BWI76_RS12300 -1.2 -3.5 hypothetical protein compare
BWI76_RS15740 -1.2 -2.2 HNH endonuclease compare
BWI76_RS12270 -1.2 -3.5 hypothetical protein compare
BWI76_RS20280 -1.2 -1.6 phosphodiesterase compare
BWI76_RS04530 -1.2 -0.9 peptidylprolyl isomerase SurA compare
BWI76_RS23365 -1.2 -1.8 LysR family transcriptional regulator compare
BWI76_RS13920 -1.2 -4.0 magnesium-translocating P-type ATPase compare
BWI76_RS17045 -1.2 -1.0 hypothetical protein compare
BWI76_RS00715 -1.2 -1.3 two-component sensor histidine kinase compare
BWI76_RS15955 -1.2 -1.7 transcriptional regulator compare
BWI76_RS08385 -1.1 -1.2 citrate (Si)-synthase compare
BWI76_RS07740 -1.1 -1.1 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS20730 -1.1 -0.9 hypothetical protein compare
BWI76_RS15670 -1.1 -1.7 hypothetical protein compare
BWI76_RS17805 -1.1 -1.0 membrane protein compare
BWI76_RS23265 -1.1 -1.1 hypothetical protein compare
BWI76_RS26245 -1.1 -2.2 transcriptional regulator compare
BWI76_RS12180 -1.1 -2.8 membrane protein compare
BWI76_RS08425 -1.1 -2.1 succinyl-CoA ligase subunit beta compare
BWI76_RS07115 -1.1 -3.3 hypothetical protein compare
BWI76_RS24605 -1.1 -2.9 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS12870 -1.1 -1.0 putative phytanoyl-CoA dioxygenase compare
BWI76_RS02735 -1.1 -1.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS22475 -1.1 -1.8 heme ABC transporter ATP-binding protein compare
BWI76_RS26150 -1.1 -1.4 molecular chaperone Hsp33 compare
BWI76_RS05120 -1.1 -4.3 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS15360 -1.1 -1.7 hypothetical protein compare
BWI76_RS25065 -1.1 -1.9 polyribonucleotide nucleotidyltransferase compare
BWI76_RS06765 -1.1 -1.4 transcriptional regulator compare
BWI76_RS11750 -1.1 -1.6 chitooligosaccharide deacetylase compare
BWI76_RS11440 -1.1 -0.7 hypothetical protein compare
BWI76_RS12205 -1.1 -1.8 hypothetical protein compare
BWI76_RS01080 -1.1 -3.7 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS23490 -1.1 -2.8 fimbrial protein compare
BWI76_RS12400 -1.0 -2.6 TetR family transcriptional regulator compare
BWI76_RS20440 -1.0 -2.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS12405 -1.0 -3.1 diguanylate phosphodiesterase compare
BWI76_RS03080 -1.0 -2.4 (Fe-S)-cluster assembly protein compare
BWI76_RS07470 -1.0 -2.4 MBL fold metallo-hydrolase compare
BWI76_RS12260 -1.0 -4.6 hypothetical protein compare
BWI76_RS12410 -1.0 -3.4 hypothetical protein compare
BWI76_RS01870 -1.0 -2.0 diacylglycerol kinase compare
BWI76_RS27940 -1.0 -1.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS16425 -1.0 -1.4 hypothetical protein compare
BWI76_RS10305 -1.0 -3.9 transposase compare
BWI76_RS21500 -1.0 -2.2 membrane protein compare
BWI76_RS19685 -1.0 -2.0 lysine transporter compare
BWI76_RS16335 -1.0 -1.2 division septum protein Blr compare
BWI76_RS14320 -1.0 -1.1 hypothetical protein compare
BWI76_RS13595 -1.0 -3.5 transcriptional regulator compare
BWI76_RS16275 -1.0 -1.5 fumarate hydratase FumA compare
BWI76_RS16240 -1.0 -1.7 anti-adapter protein IraM compare
BWI76_RS20270 -1.0 -2.1 hypothetical protein compare
BWI76_RS27865 -1.0 -2.3 hypothetical protein compare
BWI76_RS25700 -1.0 -3.4 heavy metal-responsive transcriptional regulator compare
BWI76_RS19705 -1.0 -2.1 kinase compare
BWI76_RS07510 -1.0 -1.5 hypothetical protein compare
BWI76_RS01325 -1.0 -1.6 twin-arginine translocase subunit TatB compare
BWI76_RS16990 -1.0 -2.5 ABC transporter ATP-binding protein compare
BWI76_RS21560 -1.0 -1.8 DNA repair protein RecN compare
BWI76_RS24850 -1.0 -2.4 DeoR family transcriptional regulator compare
BWI76_RS11205 -1.0 -1.9 transcription-repair coupling factor compare
BWI76_RS12335 -1.0 -3.0 hypothetical protein compare
BWI76_RS07185 -1.0 -0.8 hypothetical protein compare
BWI76_RS26425 -1.0 -3.8 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS03880 -1.0 -2.0 homoprotocatechuate degradation operon regulator, HpaR compare
BWI76_RS16490 -1.0 -0.8 glutaredoxin compare
BWI76_RS23355 -1.0 -2.3 LacI family transcriptional regulator compare
BWI76_RS20490 -0.9 -1.2 hypothetical protein compare
BWI76_RS08395 -0.9 -0.9 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS27820 -0.9 -0.4 ilvB operon leader peptide IvbL compare
BWI76_RS12375 -0.9 -2.1 DNA-invertase hin compare
BWI76_RS15840 -0.9 -2.0 prophage protein compare
BWI76_RS23920 -0.9 -1.2 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS12360 -0.9 -4.0 hypothetical protein compare
BWI76_RS19700 -0.9 -1.3 deoxyribonuclease IV compare
BWI76_RS10855 -0.9 -1.7 RND family efflux transporter MFP subunit compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in exudates experiments

For exudates Brachypodium distachyon 27-day exudates across organisms