Experiment set13IT004 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS05075 +1.8 0.9 type II secretion system protein GspG compare
BWI76_RS17945 +1.7 1.6 hypothetical protein compare
BWI76_RS13955 +1.7 2.0 hypothetical protein compare
BWI76_RS11735 +1.5 1.7 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BWI76_RS00240 +1.5 1.4 FMN-binding protein MioC compare
BWI76_RS07640 +1.4 2.9 short chain dehydrogenase compare
BWI76_RS13170 +1.4 2.2 methyltransferase compare
BWI76_RS16315 +1.4 1.4 SirA-like protein compare
BWI76_RS20150 +1.4 1.9 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS20785 +1.4 1.4 ethanolamine utilization protein EutJ compare
BWI76_RS09765 +1.4 2.7 metalloprotease compare
BWI76_RS26085 +1.3 0.6 3-dehydroquinate synthase compare
BWI76_RS20375 +1.3 1.9 membrane protein compare
BWI76_RS20930 +1.3 2.5 arsenate reductase (glutaredoxin) compare
BWI76_RS20390 +1.3 3.1 erythronate-4-phosphate dehydrogenase compare
BWI76_RS07985 +1.2 1.2 fluoride ion transporter CrcB compare
BWI76_RS17400 +1.2 1.4 transporter compare
BWI76_RS00140 +1.2 1.7 phosphate transport system regulator PhoU compare
BWI76_RS16360 +1.2 0.9 electron transport complex subunit RsxB compare
BWI76_RS19515 +1.2 2.5 D-lactate dehydrogenase (cytochrome c-553) (EC 1.1.2.5) (from data) compare
BWI76_RS24945 +1.2 1.7 glutamine amidotransferase compare
BWI76_RS19215 +1.1 1.4 proline-specific peptidase compare
BWI76_RS11815 +1.1 1.3 hypothetical protein compare
BWI76_RS06745 +1.1 2.3 N-acetyltransferase GCN5 compare
BWI76_RS24825 +1.1 2.5 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS12550 +1.1 2.2 hypothetical protein compare
BWI76_RS02580 +1.1 1.6 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS21375 +1.1 0.9 autonomous glycyl radical cofactor GrcA compare
BWI76_RS17405 +1.1 4.0 cation transport regulator compare
BWI76_RS11675 +1.0 2.1 arginine N-succinyltransferase compare
BWI76_RS14415 +1.0 1.8 transcriptional regulator, TetR family protein compare
BWI76_RS11525 +1.0 2.2 HNH endonuclease compare
BWI76_RS11950 +1.0 2.2 phosphatidylglycerophosphatase B compare
BWI76_RS19465 +1.0 1.7 hypothetical protein compare
BWI76_RS06175 +1.0 2.6 DUF188 domain-containing protein compare
BWI76_RS07710 +1.0 3.8 invasin-like protein compare
BWI76_RS11900 +1.0 1.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS08885 +1.0 2.1 transcriptional regulator compare
BWI76_RS19240 +1.0 1.7 ABC transporter substrate-binding protein compare
BWI76_RS21235 +1.0 0.6 hypothetical protein compare
BWI76_RS24350 +1.0 2.4 quinol monooxygenase compare
BWI76_RS15290 +1.0 0.8 transcriptional regulator compare
BWI76_RS21565 +1.0 0.7 outer membrane protein assembly factor BamE compare
BWI76_RS20790 +0.9 2.8 aldehyde dehydrogenase compare
BWI76_RS16470 +0.9 1.5 transcriptional repressor NemR compare
BWI76_RS08500 +0.9 1.8 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS16300 +0.9 2.2 bifunctional beta-cystathionase/maltose regulon regulatory protein compare
BWI76_RS24330 +0.9 2.5 TIGR00156 family protein compare
BWI76_RS15285 +0.9 3.1 stress protection protein MarC compare
BWI76_RS24070 +0.9 2.1 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BWI76_RS04060 +0.9 1.4 hypothetical protein compare
BWI76_RS09515 +0.9 1.1 arginine ABC transporter substrate-binding protein compare
BWI76_RS21290 +0.9 1.8 DNA-binding transcriptional regulator compare
BWI76_RS14820 +0.9 1.4 LysR family transcriptional regulator compare
BWI76_RS27200 +0.9 2.7 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL compare
BWI76_RS10535 +0.9 2.4 Asp/Glu/hydantoin racemase compare
BWI76_RS24280 +0.9 2.3 biopolymer transporter ExbB compare
BWI76_RS17820 +0.9 2.3 hypothetical protein compare
BWI76_RS21390 +0.9 1.8 thiol disulfide reductase thioredoxin compare
BWI76_RS09085 +0.9 5.3 molybdopterin molybdenumtransferase MoeA compare
BWI76_RS11125 +0.9 1.2 metal-dependent hydrolase compare
BWI76_RS10465 +0.9 2.4 hypothetical protein compare
BWI76_RS19480 +0.9 1.7 transcriptional regulator compare
BWI76_RS06070 +0.9 3.3 taurine transporter ATP-binding subunit compare
BWI76_RS07325 +0.9 2.5 aminoimidazole riboside kinase compare
BWI76_RS09420 +0.8 1.1 hypothetical protein compare
BWI76_RS23005 +0.8 2.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS19850 +0.8 1.5 tRNA-Pro compare
BWI76_RS10035 +0.8 0.9 hypothetical protein compare
BWI76_RS14975 +0.8 2.4 glyoxalase-like domain protein compare
BWI76_RS24180 +0.8 0.9 hypothetical protein compare
BWI76_RS18725 +0.8 2.2 hypothetical protein compare
BWI76_RS19865 +0.8 1.9 ecotin compare
BWI76_RS20795 +0.8 1.2 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS11435 +0.8 1.2 hypothetical protein compare
BWI76_RS04700 +0.8 1.2 acetolactate synthase small subunit compare
BWI76_RS02445 +0.8 2.3 fumarate reductase subunit C compare
BWI76_RS19890 +0.8 2.7 alpha-ketoglutarate-dependent dioxygenase AlkB compare
BWI76_RS24240 +0.8 1.8 hypothetical protein compare
BWI76_RS08720 +0.8 0.7 imidazolonepropionase compare
BWI76_RS09445 +0.8 3.6 NADPH-dependent oxidoreductase compare
BWI76_RS11110 +0.8 1.1 cell division protein YceG compare
BWI76_RS12680 +0.8 1.9 oxidoreductase compare
BWI76_RS11185 +0.8 2.3 ligand-gated channel protein compare
BWI76_RS15185 +0.8 2.8 N-acetyltransferase compare
BWI76_RS14840 +0.8 2.0 hypothetical protein compare
BWI76_RS13560 +0.8 0.5 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS03850 +0.8 2.7 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
BWI76_RS23020 +0.8 1.6 cobalamin biosynthesis protein CbiQ compare
BWI76_RS10790 +0.8 2.4 hypothetical protein compare
BWI76_RS07765 +0.8 1.0 thioesterase compare
BWI76_RS08985 +0.8 2.4 threonine/homoserine exporter RhtA compare
BWI76_RS01190 +0.8 1.1 iron donor protein CyaY compare
BWI76_RS15450 +0.8 1.2 hypothetical protein compare
BWI76_RS11170 +0.8 0.8 hypothetical protein compare
BWI76_RS25945 +0.8 1.9 ABC transporter ATP-binding protein compare
BWI76_RS04985 +0.8 2.2 aspartate 1-decarboxylase compare
BWI76_RS18820 +0.7 3.2 nitrogenase molybdenum-iron protein subunit beta compare
BWI76_RS14615 +0.7 1.0 hypothetical protein compare
BWI76_RS12150 +0.7 2.2 DNA damage-inducible protein I compare
BWI76_RS04995 +0.7 1.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
BWI76_RS27455 +0.7 1.7 DUF805 domain-containing protein compare
BWI76_RS24745 +0.7 2.1 membrane protein compare
BWI76_RS17525 +0.7 1.3 XshC-Cox1-family protein compare
BWI76_RS13065 +0.7 2.1 LysR family transcriptional regulator compare
BWI76_RS07780 +0.7 0.9 hypothetical protein compare
BWI76_RS17775 +0.7 1.3 hypothetical protein compare
BWI76_RS15445 +0.7 1.5 hypothetical protein compare
BWI76_RS02690 +0.7 1.3 hypothetical protein compare
BWI76_RS07995 +0.7 1.8 twin-arginine translocase subunit TatA compare
BWI76_RS03835 +0.7 2.8 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
BWI76_RS24110 +0.7 1.2 YggU family protein compare
BWI76_RS04605 +0.7 1.0 thiamine ABC transporter ATP-binding protein compare
BWI76_RS14375 +0.7 1.8 hypothetical protein compare
BWI76_RS14920 +0.7 4.0 ABC transporter permease compare
BWI76_RS26480 +0.7 3.3 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS15035 +0.7 0.8 metal ABC transporter permease compare
BWI76_RS24630 +0.7 3.2 putrescine aminotransferase compare
BWI76_RS16800 +0.7 1.5 amino acid ABC transporter permease compare
BWI76_RS01775 +0.7 0.9 hypothetical protein compare
BWI76_RS13805 +0.7 2.2 inorganic diphosphatase compare
BWI76_RS19235 +0.7 1.9 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS18385 +0.7 0.9 hypothetical protein compare
BWI76_RS16815 +0.7 1.1 periplasmic binding protein compare
BWI76_RS10510 +0.7 1.6 OHCU decarboxylase compare
BWI76_RS26250 +0.7 3.3 quercetin 2,3-dioxygenase compare
BWI76_RS01995 +0.7 0.9 AraC family transcriptional regulator compare
BWI76_RS03005 +0.7 1.9 hypothetical protein compare
BWI76_RS18575 +0.7 2.1 transcriptional regulator compare
BWI76_RS08765 +0.7 0.9 8-amino-7-oxononanoate synthase compare
BWI76_RS15235 +0.7 1.8 hypothetical protein compare
BWI76_RS24005 +0.7 2.9 cobalt ABC transporter ATP-binding protein compare
BWI76_RS12515 +0.7 0.6 protease compare
BWI76_RS25865 +0.7 2.1 ferredoxin compare
BWI76_RS16160 +0.7 1.4 LysR family transcriptional regulator compare
BWI76_RS11700 +0.7 0.7 hypothetical protein compare
BWI76_RS16080 +0.7 1.3 LysR family transcriptional regulator compare
BWI76_RS04515 +0.7 0.8 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS21165 +0.7 0.8 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS07735 +0.7 2.9 MFS transporter compare
BWI76_RS12585 +0.7 3.0 transcriptional regulator compare
BWI76_RS26855 +0.7 2.6 cellulose synthase operon protein YhjQ compare
BWI76_RS14970 +0.7 0.9 pyrroline-5-carboxylate reductase compare
BWI76_RS19230 +0.7 1.9 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS10780 +0.7 2.5 pyrimidine utilization protein A compare
BWI76_RS18655 +0.7 2.1 chaperone FimC, periplasmic compare
BWI76_RS01890 +0.7 1.4 transcriptional regulator Zur compare
BWI76_RS19550 +0.7 1.2 phospho-cellobiase compare
BWI76_RS15440 +0.7 1.5 hypothetical protein compare
BWI76_RS06895 +0.7 2.8 biopolymer transporter ExbB compare
BWI76_RS19390 +0.7 1.7 LysR family transcriptional regulator compare
BWI76_RS22360 +0.7 2.0 hydrogenase formation protein HypD compare
BWI76_RS22235 +0.7 1.4 transcriptional regulator GutM compare
BWI76_RS12745 +0.7 1.1 putative prophage membrane protein compare
BWI76_RS16175 +0.7 2.2 p-aminobenzoyl-glutamate transporter compare
BWI76_RS05940 +0.7 1.9 hypothetical protein compare
BWI76_RS07855 +0.7 0.9 PucR family transcriptional regulator compare
BWI76_RS16000 +0.7 1.0 multidrug transporter subunit MdtI compare
BWI76_RS13420 +0.7 0.9 ABC transporter permease compare
BWI76_RS11880 +0.7 2.5 23S rRNA pseudouridylate synthase B compare
BWI76_RS03175 +0.7 1.1 hypothetical protein compare
BWI76_RS14155 +0.7 1.2 transketolase compare
BWI76_RS21210 +0.7 3.6 hypothetical protein compare
BWI76_RS06735 +0.6 1.1 50S ribosomal protein L31 compare
BWI76_RS09115 +0.6 1.2 30S ribosomal protein S12 methylthiotransferase RimO compare
BWI76_RS16195 +0.6 0.9 hypothetical protein compare
BWI76_RS03040 +0.6 1.8 leucyl aminopeptidase compare
BWI76_RS05260 +0.6 0.6 chaperone compare
BWI76_RS26405 +0.6 1.2 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS25415 +0.6 1.7 GntR family transcriptional regulator compare
BWI76_RS20045 +0.6 2.4 hypothetical protein compare
BWI76_RS07350 +0.6 2.2 alcohol dehydrogenase compare
BWI76_RS24035 +0.6 1.6 hypothetical protein compare
BWI76_RS22620 +0.6 2.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BWI76_RS18800 +0.6 2.4 transcriptional regulator compare
BWI76_RS25480 +0.6 2.6 ribonuclease E/G compare
BWI76_RS14805 +0.6 1.6 hypothetical protein compare
BWI76_RS01585 +0.6 3.6 transcriptional regulator compare
BWI76_RS19340 +0.6 2.1 xylulokinase compare
BWI76_RS14285 +0.6 1.7 IS3 family transposase compare
BWI76_RS01895 +0.6 1.1 cupin compare
BWI76_RS13590 +0.6 1.1 hypothetical protein compare
BWI76_RS07865 +0.6 0.9 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS24970 +0.6 3.7 peptidase U32 compare
BWI76_RS17665 +0.6 1.7 proteasome-type protease compare
BWI76_RS18270 +0.6 1.2 hypothetical protein compare
BWI76_RS16690 +0.6 2.0 peptide ABC transporter permease compare
BWI76_RS19870 +0.6 1.2 malate:quinone oxidoreductase compare
BWI76_RS15925 +0.6 1.6 dimethyl sulfoxide reductase subunit A compare
BWI76_RS16795 +0.6 1.3 amino acid ABC transporter ATPase compare
BWI76_RS27045 +0.6 3.2 XylR family transcriptional regulator compare
BWI76_RS11645 +0.6 2.1 ABC transporter substrate-binding protein compare
BWI76_RS05800 +0.6 1.3 phage transcriptional activator, Ogr/delta compare
BWI76_RS22125 +0.6 1.5 membrane protein compare
BWI76_RS27745 +0.6 1.7 PTS sugar transporter subunit IIB compare
BWI76_RS12900 +0.6 1.9 hypothetical protein compare
BWI76_RS04275 +0.6 2.2 molybdopterin adenylyltransferase compare
BWI76_RS09485 +0.6 2.2 23S rRNA (uracil(747)-C(5))-methyltransferase compare
BWI76_RS05965 +0.6 1.1 hypothetical protein compare
BWI76_RS22215 +0.6 1.6 PTS sorbitol transporter subunit IIC compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in exudates experiments

For exudates Brachypodium distachyon 27-day exudates across organisms