Experiment set13IT003 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x

200 most important genes:

  gene name fitness t score description  
BWI76_RS01115 -6.1 -2.8 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS26455 -4.8 -1.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS08525 -4.3 -1.9 colicin transporter compare
BWI76_RS05015 -4.1 -2.2 transcriptional regulator compare
BWI76_RS05260 -4.1 -1.1 chaperone compare
BWI76_RS26460 -4.1 -4.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS08520 -4.0 -1.8 colicin transporter TolQ compare
BWI76_RS08535 -3.7 -1.7 translocation protein TolB compare
BWI76_RS25600 -3.6 -1.0 tRNA-Thr compare
BWI76_RS09645 -3.6 -0.9 thioredoxin-disulfide reductase compare
BWI76_RS25335 -3.5 -1.5 stringent starvation protein A compare
BWI76_RS04525 -3.5 -1.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS12090 -3.4 -3.0 HNH endonuclease compare
BWI76_RS01095 -3.3 -2.2 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS14300 -3.1 -2.3 hypothetical protein compare
BWI76_RS24075 -3.0 -3.4 glutathione synthase compare
BWI76_RS20155 -2.9 -2.1 NADH-quinone oxidoreductase subunit I compare
BWI76_RS20145 -2.9 -1.3 NADH-quinone oxidoreductase subunit K compare
BWI76_RS21075 -2.9 -1.3 membrane protein compare
BWI76_RS26620 -2.9 -0.7 Fe-S biogenesis protein NfuA compare
BWI76_RS17805 -2.8 -1.5 membrane protein compare
BWI76_RS06535 -2.6 -2.5 endopeptidase La compare
BWI76_RS01630 -2.5 -0.9 16S ribosomal RNA compare
BWI76_RS17980 -2.5 -4.4 RNA chaperone ProQ compare
BWI76_RS05570 -2.5 -1.1 hypothetical protein compare
BWI76_RS01210 -2.5 -1.1 tyrosine recombinase XerC compare
BWI76_RS23265 -2.4 -1.4 hypothetical protein compare
BWI76_RS21675 -2.4 -0.9 hypothetical protein compare
BWI76_RS05840 -2.3 -2.2 glutamate 5-kinase compare
BWI76_RS26410 -2.3 -1.5 membrane protein compare
BWI76_RS24900 -2.3 -1.2 DeoR family transcriptional regulator compare
BWI76_RS25920 -2.3 -1.4 peptidylprolyl isomerase compare
BWI76_RS03660 -2.3 -2.6 hypothetical protein compare
BWI76_RS00345 -2.3 -3.7 protein disulfide oxidoreductase DsbA compare
BWI76_RS23360 -2.2 -1.5 diaminopimelate decarboxylase compare
BWI76_RS00875 -2.2 -3.5 DNA-binding transcriptional regulator FabR compare
BWI76_RS00400 -2.2 -1.0 glutamine synthetase compare
BWI76_RS21690 -2.2 -1.9 hypothetical protein compare
BWI76_RS05450 -2.1 -0.7 ribonuclease HI compare
BWI76_RS08380 -2.1 -1.4 endonuclease VIII compare
BWI76_RS25285 -2.1 -1.1 HPr family phosphocarrier protein compare
BWI76_RS10745 -2.1 -0.9 hypothetical protein compare
BWI76_RS21310 -2.0 -0.7 DNA repair protein RecO compare
BWI76_RS27440 -2.0 -1.9 DNA helicase RecG compare
BWI76_RS00240 -2.0 -1.0 FMN-binding protein MioC compare
BWI76_RS21070 -2.0 -1.2 outer membrane protein assembly factor BamB compare
BWI76_RS18165 -2.0 -1.2 NUDIX pyrophosphatase compare
BWI76_RS18770 -2.0 -1.0 DNA gyrase inhibitor compare
BWI76_RS21370 -2.0 -0.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS09730 -2.0 -0.7 pyruvate formate lyase 1-activating protein compare
BWI76_RS17720 -1.9 -0.5 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS22755 -1.9 -3.3 phosphoadenosine phosphosulfate reductase compare
BWI76_RS05075 -1.9 -0.5 type II secretion system protein GspG compare
BWI76_RS09195 -1.9 -1.2 N-acetyltransferase compare
BWI76_RS19495 -1.8 -0.9 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS16425 -1.8 -2.6 hypothetical protein compare
BWI76_RS18920 -1.8 -2.8 ATP phosphoribosyltransferase compare
BWI76_RS21375 -1.8 -0.6 autonomous glycyl radical cofactor GrcA compare
BWI76_RS09760 -1.8 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS15110 -1.8 -5.0 putative excinuclease ABC subunit A compare
BWI76_RS21345 -1.8 -2.0 sigma-E factor regulatory protein RseB compare
BWI76_RS00965 -1.7 -0.8 acetolactate synthase 2 small subunit compare
BWI76_RS17310 -1.7 -2.7 AsnC family transcriptional regulator compare
BWI76_RS19035 -1.7 -6.5 dTDP-rhamnosyl transferase compare
BWI76_RS14390 -1.7 -1.3 hypothetical protein compare
BWI76_RS05835 -1.6 -1.3 gamma-glutamyl-phosphate reductase compare
BWI76_RS19840 -1.6 -0.9 hypothetical protein compare
BWI76_RS27915 -1.6 -1.4 YceK/YidQ family lipoprotein compare
BWI76_RS07185 -1.6 -0.9 hypothetical protein compare
BWI76_RS20360 -1.6 -0.6 cell division protein DedD compare
BWI76_RS09255 -1.6 -2.3 hypothetical protein compare
BWI76_RS01125 -1.6 -3.4 4-alpha-L-fucosyltransferase compare
BWI76_RS26470 -1.6 -3.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS23365 -1.6 -3.1 LysR family transcriptional regulator compare
BWI76_RS12225 -1.6 -2.0 hypothetical protein compare
BWI76_RS21350 -1.6 -3.0 anti-RNA polymerase sigma factor SigE compare
BWI76_RS00715 -1.5 -1.0 two-component sensor histidine kinase compare
BWI76_RS20135 -1.5 -2.5 NADH-quinone oxidoreductase subunit M compare
BWI76_RS11520 -1.5 -1.0 hypothetical protein compare
BWI76_RS24580 -1.5 -3.9 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS19375 -1.5 -1.4 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS12265 -1.5 -4.3 hypothetical protein compare
BWI76_RS16335 -1.5 -1.5 division septum protein Blr compare
BWI76_RS15740 -1.5 -1.5 HNH endonuclease compare
BWI76_RS18930 -1.5 -3.5 histidinol-phosphate transaminase compare
BWI76_RS26075 -1.5 -0.9 DNA adenine methylase compare
BWI76_RS25960 -1.4 -2.4 NUDIX hydrolase compare
BWI76_RS05235 -1.4 -0.9 hypothetical protein compare
BWI76_RS09640 -1.4 -1.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS01800 -1.4 -1.5 glucose-6-phosphate isomerase compare
BWI76_RS23915 -1.4 -1.7 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS19730 -1.4 -2.5 1-phosphofructokinase compare
BWI76_RS11900 -1.4 -0.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS24605 -1.4 -4.3 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS18230 -1.4 -1.6 trehalose-6-phosphate synthase compare
BWI76_RS18950 -1.4 -2.9 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS11235 -1.4 -1.1 hypothetical protein compare
BWI76_RS08110 -1.4 -1.8 glutamate/aspartate ABC transporter substrate-binding protein compare
BWI76_RS20160 -1.4 -2.2 NADH-quinone oxidoreductase subunit H compare
BWI76_RS16555 -1.3 -2.5 hypothetical protein compare
BWI76_RS27780 -1.3 -1.4 hypothetical protein compare
BWI76_RS01385 -1.3 -1.3 potassium transporter compare
BWI76_RS06015 -1.3 -1.2 hypothetical protein compare
BWI76_RS13050 -1.3 -1.4 transcriptional regulator compare
BWI76_RS12465 -1.3 -1.1 phage shock protein D compare
BWI76_RS12405 -1.3 -4.0 diguanylate phosphodiesterase compare
BWI76_RS02340 -1.3 -3.0 membrane protein FxsA compare
BWI76_RS13785 -1.3 -1.4 ABC transporter permease compare
BWI76_RS10510 -1.3 -2.4 OHCU decarboxylase compare
BWI76_RS22950 -1.3 -1.0 membrane protein compare
BWI76_RS24740 -1.3 -1.9 GntR family transcriptional regulator compare
BWI76_RS12895 -1.3 -2.3 hypothetical protein compare
BWI76_RS15115 -1.3 -1.5 MFS transporter compare
BWI76_RS13820 -1.3 -1.2 hypothetical protein compare
BWI76_RS20270 -1.3 -3.4 hypothetical protein compare
BWI76_RS18000 -1.3 -2.0 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
BWI76_RS04705 -1.3 -2.5 DNA-binding transcriptional regulator FruR compare
BWI76_RS15350 -1.3 -0.7 hypothetical protein compare
BWI76_RS01870 -1.3 -2.6 diacylglycerol kinase compare
BWI76_RS11205 -1.3 -1.9 transcription-repair coupling factor compare
BWI76_RS10835 -1.3 -0.8 hypothetical protein compare
BWI76_RS26390 -1.3 -3.4 cell division protein FtsX compare
BWI76_RS01080 -1.3 -4.5 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS12040 -1.2 -1.1 hypothetical protein compare
BWI76_RS16965 -1.2 -1.9 murein lipoprotein compare
BWI76_RS08205 -1.2 -2.2 DNA-binding transcriptional dual regulator NagC compare
BWI76_RS12335 -1.2 -4.5 hypothetical protein compare
BWI76_RS22765 -1.2 -4.4 sulfite reductase subunit alpha compare
BWI76_RS16330 -1.2 -1.8 oxidoreductase compare
BWI76_RS01185 -1.2 -0.8 adenylate cyclase compare
BWI76_RS12220 -1.2 -5.8 hypothetical protein compare
BWI76_RS24600 -1.2 -1.4 dihydroxyacetone kinase compare
BWI76_RS14005 -1.2 -0.9 TetR family transcriptional regulator compare
BWI76_RS15195 -1.2 -1.3 DUF4186 domain-containing protein compare
BWI76_RS02550 -1.2 -3.0 protease modulator HflC compare
BWI76_RS05790 -1.2 -1.1 phage DNA-binding protein compare
BWI76_RS09860 -1.2 -2.2 hypothetical protein compare
BWI76_RS02545 -1.2 -4.2 protease modulator HflK compare
BWI76_RS13160 -1.2 -1.0 azoreductase compare
BWI76_RS01235 -1.2 -1.2 hypothetical protein compare
BWI76_RS01200 -1.2 -0.7 diaminopimelate epimerase compare
BWI76_RS15435 -1.2 -0.9 hypothetical protein compare
BWI76_RS20280 -1.2 -3.5 phosphodiesterase compare
BWI76_RS24400 -1.2 -3.1 outer membrane channel protein TolC compare
BWI76_RS04645 -1.2 -1.8 3-dehydroquinase compare
BWI76_RS20140 -1.2 -3.4 NADH-quinone oxidoreductase subunit L compare
BWI76_RS08275 -1.2 -1.1 LexA regulated protein compare
BWI76_RS24850 -1.2 -2.8 DeoR family transcriptional regulator compare
BWI76_RS04530 -1.1 -0.9 peptidylprolyl isomerase SurA compare
BWI76_RS08530 -1.1 -0.7 protein TolA compare
BWI76_RS26670 -1.1 -5.4 two-component sensor histidine kinase compare
BWI76_RS12230 -1.1 -4.5 hypothetical protein compare
BWI76_RS14320 -1.1 -1.0 hypothetical protein compare
BWI76_RS15760 -1.1 -1.2 hypothetical protein compare
BWI76_RS09200 -1.1 -3.3 hypothetical protein compare
BWI76_RS01220 -1.1 -3.2 DNA-dependent helicase II compare
BWI76_RS17070 -1.1 -2.2 phosphoenolpyruvate synthase regulatory protein compare
BWI76_RS22450 -1.1 -1.6 selenoprotein W-related protein compare
BWI76_RS08040 -1.1 -1.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS11190 -1.1 -1.1 putative TetR/AcrR family transcriptional regulatory protein compare
BWI76_RS04465 -1.1 -2.5 carbamoyl-phosphate synthase small subunit compare
BWI76_RS13470 -1.1 -1.3 transporter compare
BWI76_RS17975 -1.0 -2.5 tail-specific protease compare
BWI76_RS06520 -1.0 -1.5 trigger factor compare
BWI76_RS04715 -1.0 -1.1 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS18780 -1.0 -1.8 D-alanyl-D-alanine carboxypeptidase compare
BWI76_RS18940 -1.0 -2.0 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS14090 -1.0 -1.9 polyketide cyclase compare
BWI76_RS08970 -1.0 -1.3 glutamine ABC transporter permease GlnP compare
BWI76_RS20190 -1.0 -2.5 NADH-quinone oxidoreductase subunit A compare
BWI76_RS03275 -1.0 -6.8 cyclomaltodextrin glucanotransferase compare
BWI76_RS05005 -1.0 -1.2 polynucleotide adenylyltransferase compare
BWI76_RS19040 -1.0 -3.4 hypothetical protein compare
BWI76_RS15635 -1.0 -1.8 hypothetical protein compare
BWI76_RS18815 -1.0 -1.4 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS27475 -1.0 -4.2 regulatory protein GntR family protein compare
BWI76_RS17205 -1.0 -2.5 cardiolipin synthase A compare
BWI76_RS09970 -1.0 -0.8 porin OmpA compare
BWI76_RS13025 -1.0 -2.3 histidine phosphatase family protein compare
BWI76_RS16250 -1.0 -1.9 DNA-binding response regulator compare
BWI76_RS08700 -1.0 -3.8 helix-turn-helix-type transcriptional regulator compare
BWI76_RS21780 -1.0 -2.1 S-(hydroxymethyl)glutathione synthase compare
BWI76_RS01935 -1.0 -1.6 thiamin phosphate synthase compare
BWI76_RS23920 -1.0 -1.2 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS01110 -1.0 -1.7 TDP-fucosamine acetyltransferase compare
BWI76_RS12410 -1.0 -3.6 hypothetical protein compare
BWI76_RS18090 -1.0 -1.3 phosphoribosylglycinamide formyltransferase 2 compare
BWI76_RS02530 -1.0 -0.7 tRNA dimethylallyltransferase compare
BWI76_RS12300 -1.0 -2.6 hypothetical protein compare
BWI76_RS15360 -1.0 -1.1 hypothetical protein compare
BWI76_RS01680 -1.0 -3.3 transcriptional regulator IclR compare
BWI76_RS26395 -1.0 -1.9 cell division protein FtsE compare
BWI76_RS12330 -1.0 -3.1 hypothetical protein compare
BWI76_RS12260 -1.0 -3.6 hypothetical protein compare
BWI76_RS19050 -0.9 -4.7 NAD(P)-dependent oxidoreductase compare
BWI76_RS04240 -0.9 -1.4 thr operon leader peptide compare
BWI76_RS00095 -0.9 -1.5 DNA-binding transcriptional regulator compare
BWI76_RS13800 -0.9 -2.4 zinc-dependent alcohol dehydrogenase compare
BWI76_RS12790 -0.9 -0.7 lactate dehydrogenase compare
BWI76_RS06870 -0.9 -2.4 aminoacyl-tRNA deacylase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms