Experiment set13IT002 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) sulfate heptahydrate 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
BWI76_RS11965 -7.5 -4.6 orotidine-5'-phosphate decarboxylase compare
BWI76_RS18950 -6.3 -4.8 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS18930 -5.9 -4.4 histidinol-phosphate transaminase compare
BWI76_RS18920 -5.8 -3.5 ATP phosphoribosyltransferase compare
BWI76_RS26460 -5.8 -4.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS18925 -5.6 -7.2 histidinol dehydrogenase compare
BWI76_RS08385 -5.5 -2.7 citrate (Si)-synthase compare
BWI76_RS27385 -5.3 -8.8 orotate phosphoribosyltransferase compare
BWI76_RS00990 -5.2 -14.4 ketol-acid reductoisomerase compare
BWI76_RS20965 -5.1 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS01615 -5.1 -10.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS27390 -5.1 -6.4 ribonuclease PH compare
BWI76_RS04250 -4.9 -8.8 homoserine kinase compare
BWI76_RS04305 -4.7 -1.5 molecular chaperone DnaJ compare
BWI76_RS04470 -4.7 -11.6 carbamoyl phosphate synthase large subunit compare
BWI76_RS18940 -4.7 -6.9 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS21475 -4.5 -3.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS19840 -4.3 -1.3 hypothetical protein compare
BWI76_RS20895 -4.2 -5.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS00855 -4.2 -10.1 argininosuccinate lyase compare
BWI76_RS08525 -4.2 -2.1 colicin transporter compare
BWI76_RS05015 -4.2 -2.5 transcriptional regulator compare
BWI76_RS02995 -4.2 -10.2 aspartate carbamoyltransferase compare
BWI76_RS21265 -4.2 -16.3 phosphoribosylformylglycinamidine synthase compare
BWI76_RS01610 -4.2 -9.7 phosphoribosylamine--glycine ligase compare
BWI76_RS04255 -4.1 -12.5 threonine synthase compare
BWI76_RS05840 -4.1 -2.8 glutamate 5-kinase compare
BWI76_RS04240 -4.1 -2.3 thr operon leader peptide compare
BWI76_RS04245 -4.0 -14.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00845 -4.0 -9.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS03010 -4.0 -11.7 ornithine carbamoyltransferase compare
BWI76_RS18935 -4.0 -5.2 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS00850 -4.0 -8.6 acetylglutamate kinase compare
BWI76_RS09910 -4.0 -17.3 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS23265 -4.0 -2.5 hypothetical protein compare
BWI76_RS08520 -4.0 -2.0 colicin transporter TolQ compare
BWI76_RS11850 -3.9 -11.1 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS00835 -3.9 -13.0 phosphoenolpyruvate carboxylase compare
BWI76_RS00965 -3.8 -1.2 acetolactate synthase 2 small subunit compare
BWI76_RS25115 -3.8 -6.3 argininosuccinate synthase compare
BWI76_RS00975 -3.8 -9.2 dihydroxy-acid dehydratase compare
BWI76_RS04675 -3.8 -9.0 3-isopropylmalate dehydrogenase compare
BWI76_RS07070 -3.8 -4.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS10990 -3.7 -1.7 dihydroorotase compare
BWI76_RS04160 -3.7 -3.6 phosphoserine phosphatase compare
BWI76_RS08535 -3.7 -1.9 translocation protein TolB compare
BWI76_RS25335 -3.7 -1.8 stringent starvation protein A compare
BWI76_RS04465 -3.6 -5.1 carbamoyl-phosphate synthase small subunit compare
BWI76_RS22765 -3.6 -9.9 sulfite reductase subunit alpha compare
BWI76_RS11860 -3.5 -8.7 anthranilate synthase component I compare
BWI76_RS04670 -3.5 -11.9 3-isopropylmalate dehydratase large subunit compare
BWI76_RS09645 -3.5 -1.1 thioredoxin-disulfide reductase compare
BWI76_RS11845 -3.5 -2.3 tryptophan synthase subunit beta compare
BWI76_RS22755 -3.5 -3.4 phosphoadenosine phosphosulfate reductase compare
BWI76_RS00785 -3.5 -8.8 cystathionine gamma-synthase compare
BWI76_RS11840 -3.4 -6.1 tryptophan synthase subunit alpha compare
BWI76_RS25645 -3.4 -7.5 shikimate dehydrogenase compare
BWI76_RS01115 -3.4 -3.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS04665 -3.3 -16.3 3-isopropylmalate dehydratase small subunit compare
BWI76_RS01655 -3.3 -8.8 homoserine O-succinyltransferase compare
BWI76_RS22760 -3.2 -6.8 sulfite reductase subunit beta compare
BWI76_RS05835 -3.2 -1.9 gamma-glutamyl-phosphate reductase compare
BWI76_RS23365 -3.2 -4.4 LysR family transcriptional regulator compare
BWI76_RS20380 -3.2 -1.0 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS09755 -3.1 -2.2 phosphoserine transaminase compare
BWI76_RS06535 -3.1 -2.1 endopeptidase La compare
BWI76_RS20350 -3.0 -7.7 amidophosphoribosyltransferase compare
BWI76_RS04680 -3.0 -10.3 2-isopropylmalate synthase compare
BWI76_RS23220 -3.0 -6.4 amino-acid N-acetyltransferase compare
BWI76_RS01800 -3.0 -2.0 glucose-6-phosphate isomerase compare
BWI76_RS16955 -3.0 -0.9 hypothetical protein compare
BWI76_RS21350 -3.0 -2.2 anti-RNA polymerase sigma factor SigE compare
BWI76_RS04685 -2.9 -7.7 putative leucine operon leader peptide compare
BWI76_RS24605 -2.9 -5.4 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS07065 -2.8 -7.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS00980 -2.8 -9.5 PLP-dependent threonine dehydratase compare
BWI76_RS20355 -2.7 -2.7 colicin V production protein compare
BWI76_RS24580 -2.7 -4.7 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS11855 -2.7 -6.3 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS16965 -2.7 -2.8 murein lipoprotein compare
BWI76_RS23920 -2.7 -2.3 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS09760 -2.7 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS01210 -2.6 -1.3 tyrosine recombinase XerC compare
BWI76_RS24285 -2.6 -8.8 cystathionine beta-lyase compare
BWI76_RS16425 -2.6 -4.1 hypothetical protein compare
BWI76_RS26455 -2.5 -1.6 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS24900 -2.5 -1.4 DeoR family transcriptional regulator compare
BWI76_RS07465 -2.4 -0.9 TetR family transcriptional regulator compare
BWI76_RS00805 -2.4 -4.5 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS15825 -2.4 -1.0 hypothetical protein compare
BWI76_RS18955 -2.4 -3.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS08210 -2.4 -1.0 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS21465 -2.4 -4.9 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS09625 -2.3 -1.2 hypothetical protein compare
BWI76_RS00400 -2.3 -1.2 glutamine synthetase compare
BWI76_RS17980 -2.3 -4.2 RNA chaperone ProQ compare
BWI76_RS26000 -2.3 -9.2 aspartate aminotransferase family protein compare
BWI76_RS26055 -2.3 -6.7 siroheme synthase compare
BWI76_RS26665 -2.2 -4.0 DNA-binding response regulator compare
BWI76_RS21450 -2.2 -1.7 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS23360 -2.1 -1.5 diaminopimelate decarboxylase compare
BWI76_RS21070 -2.1 -1.4 outer membrane protein assembly factor BamB compare
BWI76_RS06680 -2.1 -1.3 hypothetical protein compare
BWI76_RS02735 -2.0 -2.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS10745 -2.0 -1.0 hypothetical protein compare
BWI76_RS12495 -2.0 -1.0 2-Cys peroxiredoxin compare
BWI76_RS09655 -2.0 -5.5 leucine-responsive regulatory protein compare
BWI76_RS09420 -1.9 -1.5 hypothetical protein compare
BWI76_RS14390 -1.9 -1.3 hypothetical protein compare
BWI76_RS12265 -1.9 -6.6 hypothetical protein compare
BWI76_RS00985 -1.9 -7.5 transcriptional regulator IlvY compare
BWI76_RS01220 -1.9 -3.9 DNA-dependent helicase II compare
BWI76_RS09730 -1.9 -0.8 pyruvate formate lyase 1-activating protein compare
BWI76_RS00875 -1.9 -5.4 DNA-binding transcriptional regulator FabR compare
BWI76_RS25280 -1.8 -1.3 RNase adaptor protein RapZ compare
BWI76_RS26390 -1.8 -5.9 cell division protein FtsX compare
BWI76_RS00355 -1.8 -2.0 DNA polymerase I compare
BWI76_RS17720 -1.8 -0.5 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS05235 -1.8 -1.3 hypothetical protein compare
BWI76_RS20440 -1.8 -1.8 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS02530 -1.8 -1.1 tRNA dimethylallyltransferase compare
BWI76_RS02815 -1.7 -1.4 fructose-bisphosphatase class I compare
BWI76_RS20640 -1.7 -2.8 cysteine synthase A compare
BWI76_RS21570 -1.6 -2.3 RnfH family protein compare
BWI76_RS07780 -1.6 -1.3 hypothetical protein compare
BWI76_RS01080 -1.6 -6.3 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS06525 -1.6 -2.1 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS13915 -1.6 -6.6 magnesium transport protein MgtC compare
BWI76_RS01095 -1.6 -2.3 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS12195 -1.6 -3.0 hypothetical protein compare
BWI76_RS18885 -1.6 -2.1 nitrogen fixation regulatory protein compare
BWI76_RS10575 -1.5 -1.1 polar amino acid ABC transporter permease compare
BWI76_RS07645 -1.5 -1.6 short-chain dehydrogenase/reductase compare
BWI76_RS08040 -1.5 -2.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS10950 -1.5 -2.2 MFS transporter compare
BWI76_RS00715 -1.5 -1.4 two-component sensor histidine kinase compare
BWI76_RS27440 -1.5 -1.9 DNA helicase RecG compare
BWI76_RS19700 -1.5 -2.0 deoxyribonuclease IV compare
BWI76_RS01275 -1.5 -5.6 LysR family transcriptional regulator compare
BWI76_RS02340 -1.5 -5.7 membrane protein FxsA compare
BWI76_RS01110 -1.5 -3.9 TDP-fucosamine acetyltransferase compare
BWI76_RS01135 -1.4 -2.7 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS00180 -1.4 -0.6 F0F1 ATP synthase subunit epsilon compare
BWI76_RS24595 -1.4 -3.1 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS10835 -1.4 -0.9 hypothetical protein compare
BWI76_RS22805 -1.4 -5.6 GTP diphosphokinase compare
BWI76_RS15110 -1.4 -4.2 putative excinuclease ABC subunit A compare
BWI76_RS09870 -1.4 -4.4 aromatic amino acid aminotransferase compare
BWI76_RS05120 -1.4 -5.2 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS07785 -1.4 -1.4 transcriptional regulator compare
BWI76_RS14915 -1.4 -2.5 hypothetical protein compare
BWI76_RS26075 -1.4 -1.3 DNA adenine methylase compare
BWI76_RS01185 -1.4 -0.9 adenylate cyclase compare
BWI76_RS03660 -1.3 -2.8 hypothetical protein compare
BWI76_RS15015 -1.3 -1.1 DUF2132 domain-containing protein compare
BWI76_RS19010 -1.3 -1.7 polysaccharide pyruvyl transferase yvff compare
BWI76_RS01200 -1.3 -0.8 diaminopimelate epimerase compare
BWI76_RS05180 -1.3 -4.7 serine endoprotease DegQ compare
BWI76_RS12535 -1.3 -4.2 hypothetical protein compare
BWI76_RS12285 -1.3 -2.2 hypothetical protein compare
BWI76_RS25285 -1.3 -1.0 HPr family phosphocarrier protein compare
BWI76_RS14300 -1.3 -1.4 hypothetical protein compare
BWI76_RS09825 -1.3 -3.4 envelope biogenesis factor ElyC compare
BWI76_RS13920 -1.3 -5.0 magnesium-translocating P-type ATPase compare
BWI76_RS09650 -1.3 -4.1 hypothetical protein compare
BWI76_RS00795 -1.3 -1.6 carboxymuconolactone decarboxylase compare
BWI76_RS15600 -1.3 -2.2 hypothetical protein compare
BWI76_RS26395 -1.3 -3.4 cell division protein FtsE compare
BWI76_RS00960 -1.3 -4.3 acetolactate synthase 2 catalytic subunit compare
BWI76_RS23490 -1.2 -5.0 fimbrial protein compare
BWI76_RS19905 -1.2 -3.3 OmpK36 porin compare
BWI76_RS04715 -1.2 -1.8 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS21480 -1.2 -3.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS21140 -1.2 -0.8 molecular chaperone HscA compare
BWI76_RS21780 -1.2 -2.4 S-(hydroxymethyl)glutathione synthase compare
BWI76_RS07185 -1.2 -1.1 hypothetical protein compare
BWI76_RS04705 -1.2 -2.4 DNA-binding transcriptional regulator FruR compare
BWI76_RS19770 -1.2 -1.1 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS19685 -1.2 -3.0 lysine transporter compare
BWI76_RS10415 -1.2 -3.0 endoribonuclease L-PSP compare
BWI76_RS18905 -1.2 -2.7 putrescine/spermidine ABC transporter compare
BWI76_RS03665 -1.2 -2.0 ABC transporter ATP-binding protein compare
BWI76_RS13560 -1.2 -0.6 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS12400 -1.2 -4.1 TetR family transcriptional regulator compare
BWI76_RS12090 -1.2 -1.8 HNH endonuclease compare
BWI76_RS12180 -1.2 -5.3 membrane protein compare
BWI76_RS13595 -1.2 -2.9 transcriptional regulator compare
BWI76_RS13975 -1.1 -1.3 urea carboxylase compare
BWI76_RS00390 -1.1 -2.8 two-component system sensor histidine kinase NtrB compare
BWI76_RS10930 -1.1 -4.0 glucan biosynthesis protein G compare
BWI76_RS22950 -1.1 -1.7 membrane protein compare
BWI76_RS25870 -1.1 -0.9 elongation factor Tu compare
BWI76_RS02610 -1.1 -3.2 transcriptional regulator compare
BWI76_RS11485 -1.1 -3.8 serine protein kinase PrkA compare
BWI76_RS12205 -1.1 -2.4 hypothetical protein compare
BWI76_RS10935 -1.1 -2.4 glucan biosynthesis glucosyltransferase H compare
BWI76_RS12790 -1.1 -0.8 lactate dehydrogenase compare
BWI76_RS15680 -1.1 -3.4 hypothetical protein compare
BWI76_RS18815 -1.1 -1.3 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS25065 -1.1 -2.1 polyribonucleotide nucleotidyltransferase compare


Specific Phenotypes

For 2 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms