Experiment set13H6 for Pseudomonas stutzeri RCH2

Compare to:

L-Valine nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_0279 -5.2 -7.9 methionine biosynthesis protein MetW compare
Psest_0153 -5.1 -13.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2591 -4.8 -4.2 3-isopropylmalate dehydratase, large subunit compare
Psest_3298 -4.7 -14.0 histidinol dehydrogenase compare
Psest_3862 -4.6 -17.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3648 -4.5 -10.5 anthranilate phosphoribosyltransferase compare
Psest_2584 -4.5 -8.9 Phosphoribosylanthranilate isomerase compare
Psest_0155 -4.4 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3864 -4.3 -14.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2578 -4.2 -17.1 O-succinylhomoserine sulfhydrylase compare
Psest_1082 -4.2 -3.2 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0280 -4.2 -16.3 homoserine O-acetyltransferase compare
Psest_2590 -4.1 -1.7 3-isopropylmalate dehydratase, small subunit compare
Psest_0952 -3.9 -4.3 Uncharacterized conserved protein compare
Psest_3384 -3.9 -11.4 glutamate 5-kinase compare
Psest_0326 -3.9 -16.8 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3866 -3.8 -19.9 threonine ammonia-lyase, biosynthetic, long form compare
Psest_1079 -3.8 -5.2 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_3649 -3.8 -12.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2589 -3.7 -14.1 3-isopropylmalate dehydrogenase compare
Psest_0327 -3.7 -12.1 Transcriptional regulator compare
Psest_1080 -3.6 -13.7 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Psest_0313 -3.6 -7.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3650 -3.5 -18.3 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0325 -3.5 -14.6 Putative threonine efflux protein compare
Psest_1292 -3.5 -9.8 monothiol glutaredoxin, Grx4 family compare
Psest_0062 -3.5 -15.0 tryptophan synthase, alpha subunit compare
Psest_0508 -3.4 -9.9 gamma-glutamyl phosphate reductase compare
Psest_3998 -3.4 -8.7 glutamate--cysteine ligase compare
Psest_3647 -3.4 -7.6 Indole-3-glycerol phosphate synthase compare
Psest_1083 -3.3 -12.4 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Psest_3931 -3.3 -6.0 Signal transduction histidine kinase, nitrogen specific compare
Psest_0152 -3.3 -4.2 Imidazoleglycerol-phosphate dehydratase compare
Psest_1295 -3.2 -8.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2579 -3.2 -3.8 amidophosphoribosyltransferase compare
Psest_0063 -3.2 -13.4 tryptophan synthase, beta subunit compare
Psest_4287 -3.2 -7.7 Predicted glutamine amidotransferases compare
Psest_3932 -3.1 -8.4 nitrogen regulation protein NR(I) compare
Psest_3943 -3.1 -6.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0078 -3.1 -1.8 hypothetical protein compare
Psest_3818 -3.1 -6.7 endoribonuclease L-PSP, putative compare
Psest_3517 -2.9 -18.1 branched-chain ketoacid ferredoxin reductase (EC 1.2.7.7) active on 4-methyl-2-oxopentanoate, (S)-3-methyl-2-oxopentanoate, or 3-methyl-2-oxobutanoate (from data) conserved
Psest_0999 -2.8 -3.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2872 -2.7 -2.5 protein RecA compare
Psest_3299 -2.5 -11.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2845 -2.5 -9.8 [Protein-PII] uridylyltransferase compare
Psest_2333 -2.4 -1.5 Protein of unknown function (DUF3359). compare
Psest_3944 -2.4 -3.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3317 -2.3 -5.2 Phosphotransferase System HPr (HPr) Family compare
Psest_2988 -2.3 -6.8 aspartate kinase, monofunctional class compare
Psest_1163 -2.3 -7.1 diguanylate cyclase (GGDEF) domain compare
Psest_0296 -2.3 -7.3 glutathione synthetase, prokaryotic compare
Psest_0687 -2.2 -9.5 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3226 -2.2 -1.4 Predicted membrane protein compare
Psest_3159 -2.2 -3.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3377 -2.1 -1.4 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2104 -2.1 -2.0 IscR-regulated protein YhgI compare
Psest_1417 -2.1 -1.9 hypothetical protein compare
Psest_1640 -2.0 -11.0 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_1463 -2.0 -1.4 SufE protein probably involved in Fe-S center assembly compare
Psest_3518 -1.9 -1.3 Transcriptional regulators compare
Psest_2437 -1.9 -5.5 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) conserved
Psest_2158 -1.9 -13.9 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_3297 -1.9 -8.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3301 -1.9 -3.3 Predicted transcriptional regulator, BolA superfamily compare
Psest_4084 -1.8 -11.2 oxaloacetate decarboxylase alpha subunit compare
Psest_3129 -1.8 -1.7 tyrosine recombinase XerD compare
Psest_2324 -1.8 -12.1 hypothetical protein compare
Psest_2438 -1.8 -9.1 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) compare
Psest_0193 -1.7 -1.6 conserved hypothetical protein compare
Psest_4085 -1.7 -10.3 Biotin carboxylase compare
Psest_2325 -1.7 -9.0 alpha-L-glutamate ligase-related protein compare
Psest_0953 -1.7 -6.5 iron-sulfur cluster-binding protein compare
Psest_1139 -1.7 -4.5 PAS domain S-box compare
Psest_1293 -1.7 -2.3 VanZ like family. compare
Psest_3767 -1.6 -4.3 tyrosine recombinase XerC compare
Psest_1474 -1.6 -2.2 phosphoribosylaminoimidazole synthetase compare
Psest_1230 -1.6 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_2680 -1.6 -7.2 transcriptional regulator, BolA protein family compare
Psest_0722 -1.6 -6.7 Predicted ATPase compare
Psest_1084 -1.6 -9.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
Psest_1013 -1.6 -2.1 phosphoribosylamine--glycine ligase compare
Psest_2329 -1.5 -11.1 Transcriptional regulator compare
Psest_2440 -1.5 -6.5 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) conserved
Psest_0737 -1.5 -1.3 Cu(I)-responsive transcriptional regulator compare
Psest_1567 -1.5 -5.0 Transcriptional regulator compare
Psest_1824 -1.5 -4.4 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1242 -1.5 -2.3 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2712 -1.5 -3.9 Surface lipoprotein compare
Psest_1235 -1.5 -7.9 Leucyl aminopeptidase compare
Psest_3700 -1.5 -1.6 hypothetical protein compare
Psest_2744 -1.5 -1.8 Uncharacterized conserved protein compare
Psest_1081 -1.5 -2.5 hypothetical protein compare
Psest_3419 -1.4 -6.4 Predicted transcriptional regulators compare
Psest_1619 -1.4 -4.5 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 compare
Psest_3531 -1.4 -1.7 Peptidase propeptide and YPEB domain. compare
Psest_0137 -1.4 -6.0 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_0954 -1.4 -6.6 Fe-S oxidoreductase compare
Psest_1496 -1.3 -1.3 Holliday junction DNA helicase, RuvA subunit compare
Psest_1466 -1.3 -3.2 transcriptional regulator, Spx/MgsR family compare
Psest_1402 -1.3 -7.2 Putative threonine efflux protein compare
Psest_0138 -1.3 -7.3 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_0692 -1.3 -2.7 rRNA methylase, putative, group 3 compare
Psest_0719 -1.3 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_0872 -1.3 -1.4 Helix-turn-helix. compare
Psest_3721 -1.2 -4.8 Malic enzyme compare
Psest_4086 -1.2 -5.7 Transcriptional regulator compare
Psest_0144 -1.2 -5.0 Fe-S cluster protector protein compare
Psest_1506 -1.2 -4.8 queuosine biosynthesis protein QueC compare
Psest_0558 -1.2 -0.9 urease, beta subunit compare
Psest_1167 -1.2 -1.2 hypothetical protein compare
Psest_1403 -1.2 -4.1 Transcriptional regulators compare
Psest_3306 -1.2 -3.3 conserved hypothetical integral membrane protein compare
Psest_4406 -1.2 -1.2 hypothetical protein compare
Psest_3766 -1.2 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2435 -1.2 -4.2 Transcriptional regulator conserved
Psest_1772 -1.2 -3.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4083 -1.2 -7.9 Predicted permease compare
Psest_4196 -1.2 -3.4 Type II secretory pathway, component PulK compare
Psest_2436 -1.2 -6.1 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) compare
Psest_1522 -1.2 -2.9 hypothetical protein compare
Psest_3670 -1.2 -7.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_0175 -1.1 -4.6 Xaa-Pro aminopeptidase compare
Psest_3960 -1.1 -0.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3303 -1.1 -3.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1704 -1.1 -1.0 Dehydrogenases (flavoproteins) compare
Psest_3910 -1.1 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3954 -1.1 -2.4 Small protein A (tmRNA-binding) compare
Psest_3993 -1.1 -6.8 alpha-L-glutamate ligases, RimK family compare
Psest_1974 -1.1 -2.7 integration host factor, alpha subunit compare
Psest_2532 -1.1 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_1468 -1.1 -2.6 hypothetical protein compare
Psest_1920 -1.1 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3735 -1.1 -1.7 uncharacterized domain 1 compare
Psest_1012 -1.0 -3.4 Signal transduction histidine kinase compare
Psest_3795 -1.0 -4.6 Glycine/D-amino acid oxidases (deaminating) compare
Psest_3047 -1.0 -1.1 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3550 -1.0 -1.9 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_0842 -1.0 -2.0 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_3305 -1.0 -5.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2027 -1.0 -6.5 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_1464 -1.0 -4.3 Selenocysteine lyase compare
Psest_2439 -1.0 -5.9 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) conserved
Psest_3537 -1.0 -4.1 hypothetical protein compare
Psest_3772 -1.0 -3.6 ammonium transporter compare
Psest_0515 -1.0 -3.3 rare lipoprotein A compare
Psest_3839 -1.0 -2.9 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_2565 -1.0 -2.1 Transcriptional regulator compare
Psest_2288 -1.0 -3.4 trigger factor compare
Psest_1000 -0.9 -5.1 PAS domain S-box compare
Psest_2793 -0.9 -2.1 hypothetical protein compare
Psest_4141 -0.9 -4.8 3-carboxymuconate cyclase compare
Psest_0445 -0.9 -5.8 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3162 -0.9 -5.5 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_4219 -0.9 -1.8 DNA polymerase I compare
Psest_2967 -0.9 -2.2 flagellar basal-body rod protein FlgC compare
Psest_2716 -0.9 -1.7 ABC-type multidrug transport system, ATPase component compare
Psest_2090 -0.9 -2.3 Protein of unknown function (DUF2970). compare
Psest_0136 -0.9 -5.0 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_2752 -0.9 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_3307 -0.9 -4.1 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0510 -0.9 -2.9 iojap-like ribosome-associated protein compare
Psest_2806 -0.9 -3.9 RNA polymerase sigma factor RpoS compare
Psest_2906 -0.9 -3.9 tRNA_Thr_CGT compare
Psest_3339 -0.9 -3.0 Signal transduction histidine kinase compare
Psest_3304 -0.9 -2.9 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0785 -0.9 -2.1 Thioredoxin reductase compare
Psest_3042 -0.9 -0.7 Nitrate reductase cytochrome c-type subunit compare
Psest_1037 -0.9 -1.2 acetolactate synthase, small subunit compare
Psest_0097 -0.9 -1.3 phosphonates metabolism transcriptional regulator PhnF compare
Psest_0902 -0.9 -2.6 Predicted transcriptional regulators compare
Psest_3842 -0.9 -3.4 Transcriptional regulators compare
Psest_2903 -0.9 -2.6 Site-specific recombinase XerD compare
Psest_2711 -0.9 -1.7 PilZ domain. compare
Psest_0506 -0.9 -2.7 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Psest_0571 -0.9 -3.4 Transcriptional regulators compare
Psest_0067 -0.9 -1.7 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_2017 -0.8 -3.0 Predicted acyltransferase compare
Psest_2088 -0.8 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_3878 -0.8 -2.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0006 -0.8 -3.0 alkyl hydroperoxide reductase, F subunit compare
Psest_3840 -0.8 -2.9 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_3496 -0.8 -1.5 Predicted metal-binding protein compare
Psest_2706 -0.8 -3.9 tRNA dihydrouridine synthase A compare
Psest_0248 -0.8 -3.5 Transcriptional regulator compare
Psest_1404 -0.8 -4.1 Methyltransferase domain. compare
Psest_1509 -0.8 -4.6 quinolinate synthetase complex, A subunit compare
Psest_2761 -0.8 -4.0 Uncharacterized protein with SCP/PR1 domains compare
Psest_0485 -0.8 -2.0 clan AA aspartic protease, TIGR02281 family compare
Psest_1860 -0.8 -1.8 Uncharacterized conserved protein compare
Psest_0268 -0.8 -3.2 tRNA (guanine-N(7)-)-methyltransferase compare
Psest_1111 -0.8 -2.5 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1188 -0.8 -3.4 FOG: EAL domain compare
Psest_4305 -0.8 -4.4 NAD-dependent aldehyde dehydrogenases compare
Psest_3161 -0.8 -3.9 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_2724 -0.8 -1.8 hypothetical protein compare
Psest_1848 -0.8 -4.8 hypothetical protein compare
Psest_1006 -0.8 -4.1 dTDP-4-dehydrorhamnose reductase compare
Psest_4097 -0.8 -4.5 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1805 -0.8 -1.6 integration host factor, beta subunit compare


Specific Phenotypes

For 17 genes in this experiment

For nitrogen source L-Valine in Pseudomonas stutzeri RCH2

For nitrogen source L-Valine across organisms