Experiment set13H4 for Pseudomonas stutzeri RCH2

Compare to:

L-Alanine nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3818 -7.1 -4.9 endoribonuclease L-PSP, putative compare
Psest_0152 -7.0 -4.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_0279 -6.7 -4.7 methionine biosynthesis protein MetW compare
Psest_2088 -6.3 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_0062 -6.3 -11.3 tryptophan synthase, alpha subunit compare
Psest_3648 -6.1 -6.0 anthranilate phosphoribosyltransferase compare
Psest_3710 -6.1 -13.6 glutamate synthase small subunit family protein, proteobacterial compare
Psest_2578 -6.1 -12.3 O-succinylhomoserine sulfhydrylase compare
Psest_3650 -6.1 -13.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2650 -6.1 -5.5 hypothetical protein compare
Psest_0954 -6.0 -9.2 Fe-S oxidoreductase compare
Psest_3794 -6.0 -15.0 Transcriptional regulators conserved
Psest_0508 -6.0 -10.0 gamma-glutamyl phosphate reductase compare
Psest_0953 -5.9 -12.0 iron-sulfur cluster-binding protein compare
Psest_3649 -5.9 -8.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0153 -5.8 -11.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2584 -5.7 -5.6 Phosphoribosylanthranilate isomerase compare
Psest_3862 -5.7 -16.1 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2591 -5.7 -3.9 3-isopropylmalate dehydratase, large subunit compare
Psest_3384 -5.7 -5.5 glutamate 5-kinase compare
Psest_0155 -5.6 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3711 -5.6 -18.7 Glutamate synthase domain 2 compare
Psest_3944 -5.6 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3298 -5.6 -11.9 histidinol dehydrogenase compare
Psest_2590 -5.5 -1.7 3-isopropylmalate dehydratase, small subunit compare
Psest_3647 -5.5 -8.4 Indole-3-glycerol phosphate synthase compare
Psest_3864 -5.4 -14.9 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0325 -5.4 -13.1 Putative threonine efflux protein compare
Psest_0952 -5.3 -3.7 Uncharacterized conserved protein compare
Psest_2988 -5.3 -6.3 aspartate kinase, monofunctional class compare
Psest_1640 -5.2 -16.4 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3793 -5.1 -10.6 D-alanine dehydrogenase (EC 1.4.99.-) (from data) conserved
Psest_0063 -5.0 -13.2 tryptophan synthase, beta subunit compare
Psest_0280 -4.9 -15.3 homoserine O-acetyltransferase compare
Psest_3932 -4.7 -7.2 nitrogen regulation protein NR(I) compare
Psest_3299 -4.7 -15.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0687 -4.6 -10.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_4085 -4.4 -20.1 Biotin carboxylase compare
Psest_0313 -4.4 -7.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4084 -4.4 -19.6 oxaloacetate decarboxylase alpha subunit compare
Psest_2589 -4.3 -12.9 3-isopropylmalate dehydrogenase compare
Psest_3866 -4.2 -20.2 threonine ammonia-lyase, biosynthetic, long form compare
Psest_4086 -4.0 -13.4 Transcriptional regulator compare
Psest_3943 -3.9 -5.7 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1295 -3.9 -7.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3297 -3.8 -16.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3998 -3.6 -10.1 glutamate--cysteine ligase compare
Psest_2579 -3.6 -3.5 amidophosphoribosyltransferase compare
Psest_2329 -3.5 -17.8 Transcriptional regulator compare
Psest_3317 -3.5 -5.1 Phosphotransferase System HPr (HPr) Family compare
Psest_3931 -3.4 -7.0 Signal transduction histidine kinase, nitrogen specific compare
Psest_3351 -3.3 -7.4 peptide chain release factor 3 compare
Psest_3721 -3.2 -9.4 Malic enzyme compare
Psest_0498 -3.1 -2.2 ribosome small subunit-dependent GTPase A compare
Psest_2845 -3.0 -12.3 [Protein-PII] uridylyltransferase compare
Psest_1518 -3.0 -3.5 tRNA_Ser_CGA compare
Psest_0969 -2.8 -2.9 transcription elongation factor GreA compare
Psest_0415 -2.7 -6.7 dethiobiotin synthase compare
Psest_2532 -2.7 -5.0 Uncharacterized protein conserved in bacteria compare
Psest_3100 -2.7 -5.6 RNA polymerase sigma factor RpoE compare
Psest_3226 -2.6 -1.6 Predicted membrane protein compare
Psest_0326 -2.6 -7.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_1496 -2.5 -1.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_0411 -2.5 -9.2 biotin synthetase compare
Psest_0327 -2.4 -4.2 Transcriptional regulator compare
Psest_3927 -2.4 -6.8 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2104 -2.4 -2.3 IscR-regulated protein YhgI compare
Psest_3910 -2.4 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_0958 -2.3 -8.3 Oligoketide cyclase/lipid transport protein compare
Psest_3092 -2.2 -2.5 ribonuclease III, bacterial compare
Psest_1474 -2.1 -1.5 phosphoribosylaminoimidazole synthetase compare
Psest_0955 -2.1 -4.5 D,L-lactate:H+ symporter (from data) compare
Psest_1686 -2.1 -6.7 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1464 -2.1 -9.5 Selenocysteine lyase compare
Psest_1619 -2.1 -7.0 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 compare
Psest_0306 -2.1 -13.4 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2714 -2.0 -3.5 7-cyano-7-deazaguanine reductase compare
Psest_0309 -2.0 -1.7 RND family efflux transporter, MFP subunit compare
Psest_1540 -2.0 -2.6 biotin-dependent carboxylase uncharacterized domain compare
Psest_3338 -2.0 -2.5 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2946 -2.0 -3.2 septum site-determining protein MinD compare
Psest_1013 -2.0 -2.7 phosphoribosylamine--glycine ligase compare
Psest_2530 -1.9 -5.2 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3159 -1.9 -7.6 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2090 -1.9 -2.3 Protein of unknown function (DUF2970). compare
Psest_0722 -1.9 -8.3 Predicted ATPase compare
Psest_1837 -1.8 -8.0 Endoglucanase compare
Psest_0412 -1.8 -9.0 8-amino-7-oxononanoate synthase compare
Psest_1037 -1.8 -2.3 acetolactate synthase, small subunit compare
Psest_0398 -1.8 -6.3 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_1871 -1.8 -8.0 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_0520 -1.8 -1.3 hypothetical protein compare
Psest_0175 -1.8 -7.3 Xaa-Pro aminopeptidase compare
Psest_3129 -1.8 -1.7 tyrosine recombinase XerD compare
Psest_1235 -1.8 -5.7 Leucyl aminopeptidase compare
Psest_0164 -1.7 -0.9 Glutaredoxin, GrxC family compare
Psest_3809 -1.7 -4.9 hypothetical protein compare
Psest_3792 -1.7 -4.1 Putative translation initiation inhibitor, yjgF family compare
Psest_0028 -1.7 -5.6 Coproporphyrinogen III oxidase compare
Psest_3884 -1.7 -1.4 Signal transduction histidine kinase compare
Psest_1463 -1.7 -1.3 SufE protein probably involved in Fe-S center assembly compare
Psest_2324 -1.6 -11.8 hypothetical protein compare
Psest_0542 -1.6 -9.0 AMP nucleosidase compare
Psest_0218 -1.6 -2.3 Acyl-CoA hydrolase compare
Psest_2027 -1.6 -9.3 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_1804 -1.6 -2.0 Superfamily II DNA and RNA helicases compare
Psest_1292 -1.6 -7.8 monothiol glutaredoxin, Grx4 family compare
Psest_0284 -1.6 -10.5 pyridoxal phosphate enzyme, YggS family compare
Psest_3962 -1.5 -2.0 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_2953 -1.5 -2.9 Histone acetyltransferase compare
Psest_2325 -1.5 -8.0 alpha-L-glutamate ligase-related protein compare
Psest_0413 -1.5 -6.4 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_4282 -1.5 -7.9 spermidine/putrescine ABC transporter ATP-binding subunit compare
Psest_0951 -1.5 -8.6 FAD/FMN-containing dehydrogenases compare
Psest_2316 -1.5 -9.1 phosphoenolpyruvate synthase compare
Psest_4325 -1.5 -2.9 hypothetical protein compare
Psest_2405 -1.5 -3.1 NAD-dependent protein deacetylases, SIR2 family compare
Psest_2018 -1.5 -2.8 Uncharacterized conserved protein compare
Psest_2719 -1.5 -1.4 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_2285 -1.5 -3.5 ATP-dependent protease La compare
Psest_4219 -1.4 -2.7 DNA polymerase I compare
Psest_1954 -1.4 -4.1 hypothetical protein compare
Psest_1955 -1.4 -5.2 Predicted membrane protein compare
Psest_4280 -1.4 -3.9 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_0691 -1.4 -8.3 ribonuclease R compare
Psest_0489 -1.4 -0.9 phosphoserine phosphatase SerB compare
Psest_3339 -1.4 -4.5 Signal transduction histidine kinase compare
Psest_4281 -1.3 -8.8 ABC-type spermidine/putrescine transport system, permease component I compare
Psest_2764 -1.3 -1.5 hypothetical protein compare
Psest_0867 -1.3 -1.7 hypothetical protein compare
Psest_3322 -1.3 -10.6 TIGR02099 family protein compare
Psest_3148 -1.3 -1.3 hypothetical protein compare
Psest_2786 -1.3 -1.4 Domain of unknown function (DUF3597). compare
Psest_0207 -1.3 -2.8 hypothetical protein compare
Psest_3767 -1.3 -4.0 tyrosine recombinase XerC compare
Psest_0718 -1.3 -2.9 nicotinate-nucleotide pyrophosphorylase compare
Psest_3810 -1.3 -0.9 orotate phosphoribosyltransferase compare
Psest_2864 -1.3 -3.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1990 -1.3 -3.5 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_1505 -1.3 -1.9 Organic radical activating enzymes compare
Psest_3045 -1.2 -1.9 Cold shock proteins compare
Psest_2945 -1.2 -0.8 septum site-determining protein MinC compare
Psest_1282 -1.2 -2.5 Amidases related to nicotinamidase compare
Psest_2527 -1.2 -5.6 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4284 -1.2 -8.2 Spermidine/putrescine-binding periplasmic protein compare
Psest_2935 -1.2 -2.3 hypothetical protein compare
Psest_1012 -1.2 -4.2 Signal transduction histidine kinase compare
Psest_0697 -1.2 -2.5 ribosomal protein L9 compare
Psest_2134 -1.2 -8.6 amino acid carrier protein compare
Psest_0414 -1.2 -4.1 biotin biosynthesis protein BioC compare
Psest_3042 -1.2 -1.0 Nitrate reductase cytochrome c-type subunit compare
Psest_0998 -1.2 -2.3 poly(A) polymerase compare
Psest_4350 -1.2 -4.5 Transcriptional regulators of sugar metabolism compare
Psest_0154 -1.2 -3.4 Uncharacterized conserved protein compare
Psest_2566 -1.2 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_4083 -1.1 -8.0 Predicted permease compare
Psest_2648 -1.1 -2.7 hypothetical protein compare
Psest_2531 -1.1 -7.6 cytochrome c oxidase accessory protein FixG compare
Psest_3790 -1.1 -6.8 Cytochrome c5 compare
Psest_0097 -1.1 -1.7 phosphonates metabolism transcriptional regulator PhnF compare
Psest_2911 -1.1 -1.6 Protein of unknown function (DUF2945). compare
Psest_3047 -1.1 -1.2 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_2323 -1.1 -6.9 Uncharacterized protein conserved in archaea compare
Psest_0191 -1.1 -0.7 PAS domain S-box compare
Psest_1506 -1.1 -4.3 queuosine biosynthesis protein QueC compare
Psest_3843 -1.1 -5.1 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0193 -1.1 -1.4 conserved hypothetical protein compare
Psest_0442 -1.1 -2.5 ATPases of the AAA+ class compare
Psest_1920 -1.1 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1595 -1.1 -1.3 Copper chaperone compare
Psest_0359 -1.0 -2.6 Transcriptional regulators compare
Psest_3237 -1.0 -1.4 hypothetical protein compare
Psest_2718 -1.0 -1.0 hypothetical protein compare
Psest_4010 -1.0 -1.2 peroxiredoxin, OsmC subfamily compare
Psest_3718 -1.0 -5.2 Tfp pilus assembly protein PilN compare
Psest_0872 -1.0 -1.1 Helix-turn-helix. compare
Psest_2158 -1.0 -7.3 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_3302 -1.0 -3.7 Predicted membrane protein compare
Psest_0297 -1.0 -3.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2645 -1.0 -4.8 Transcriptional regulator compare
Psest_4051 -1.0 -2.5 molybdenum-pterin binding domain compare
Psest_1509 -1.0 -4.1 quinolinate synthetase complex, A subunit compare
Psest_1951 -1.0 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0988 -1.0 -1.6 Protein of unknown function (DUF2845). compare
Psest_1527 -1.0 -6.7 Na+/proline symporter compare
Psest_3926 -1.0 -6.0 GTP-binding protein TypA/BipA compare
Psest_0719 -0.9 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_4287 -0.9 -3.6 Predicted glutamine amidotransferases compare
Psest_3988 -0.9 -5.1 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_1691 -0.9 -3.0 aminodeoxychorismate lyase compare
Psest_4201 -0.9 -1.2 general secretion pathway protein F compare
Psest_3287 -0.9 -3.7 Type II secretory pathway, component PulF compare
Psest_2083 -0.9 -3.1 Putative sterol carrier protein compare
Psest_1541 -0.9 -4.2 TIGR00370 family protein compare
Psest_2525 -0.9 -2.9 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_1473 -0.9 -3.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2761 -0.9 -3.0 Uncharacterized protein with SCP/PR1 domains compare
Psest_2976 -0.9 -1.0 hypothetical protein compare
Psest_0212 -0.9 -1.0 exodeoxyribonuclease V, gamma subunit compare
Psest_0024 -0.9 -4.8 LysM domain. compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source L-Alanine in Pseudomonas stutzeri RCH2

For nitrogen source L-Alanine across organisms