Experiment set13H38 for Pseudomonas stutzeri RCH2

Compare to:

L-Proline nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Psest_1660 +1.4 3.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0164 +1.1 1.2 Glutaredoxin, GrxC family compare
Psest_2122 +1.1 1.6 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2613 +1.1 2.1 hypothetical protein compare
Psest_0511 +1.1 1.4 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3546 +1.0 1.9 Phosphatidylglycerophosphatase A and related proteins compare
Psest_1732 +0.9 4.1 flagellar biosynthetic protein FliP compare
Psest_3991 +0.9 2.3 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_0367 +0.9 2.9 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_0759 +0.9 1.0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_2955 +0.8 2.1 Predicted transcriptional regulator with C-terminal CBS domains compare
Psest_0487 +0.8 3.4 Uncharacterized protein conserved in bacteria compare
Psest_0346 +0.8 2.0 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_1179 +0.8 1.7 2-hydroxy-3-oxopropionate reductase compare
Psest_1718 +0.8 3.0 flagellar hook-basal body complex protein FliE compare
Psest_1677 +0.8 2.7 Protein-tyrosine-phosphatase compare
Psest_1840 +0.8 7.1 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_2066 +0.8 2.2 ABC-type uncharacterized transport system, permease component compare
Psest_2288 +0.8 2.6 trigger factor compare
Psest_1595 +0.8 1.5 Copper chaperone compare
Psest_0031 +0.8 1.3 Uncharacterized conserved protein compare
Psest_0845 +0.8 0.8 hypothetical protein compare
Psest_0575 +0.7 0.9 HrpA-like helicases compare
Psest_3146 +0.7 1.5 hypothetical protein compare
Psest_3535 +0.7 2.0 hypothetical protein compare
Psest_1313 +0.7 1.3 Uncharacterized conserved small protein compare
Psest_0846 +0.7 3.9 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_3803 +0.7 1.5 DNA repair protein radc compare
Psest_0592 +0.7 2.5 hypothetical protein compare
Psest_1635 +0.7 6.3 Signal transduction histidine kinase compare
Psest_2015 +0.7 1.8 Type II secretory pathway, component PulD compare
Psest_2981 +0.7 1.4 sodium pump decarboxylases, gamma subunit compare
Psest_3151 +0.6 1.2 hypothetical protein compare
Psest_2647 +0.6 1.5 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_1878 +0.6 1.2 Uncharacterized protein conserved in bacteria compare
Psest_4103 +0.6 1.3 AraC-type DNA-binding domain-containing proteins compare
Psest_3231 +0.6 1.1 hypothetical protein compare
Psest_3838 +0.6 2.3 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_2136 +0.6 3.8 Predicted homoserine dehydrogenase compare
Psest_1625 +0.6 3.1 hypothetical protein compare
Psest_3913 +0.6 1.6 hypothetical protein compare
Psest_0782 +0.6 2.4 Transcriptional regulator of aromatic amino acids metabolism compare
Psest_3850 +0.6 0.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0649 +0.6 3.1 Glutamate decarboxylase and related PLP-dependent proteins compare
Psest_2260 +0.6 5.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2225 +0.6 1.8 Diacylglycerol kinase compare
Psest_0349 +0.6 3.5 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_2454 +0.6 1.6 Rhodanese-related sulfurtransferase compare
Psest_1657 +0.6 1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1306 +0.6 0.8 hypothetical protein compare
Psest_4258 +0.6 2.8 ABC-type uncharacterized transport system, auxiliary component compare
Psest_2240 +0.6 1.4 hypothetical protein compare
Psest_1719 +0.6 2.8 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_2304 +0.6 0.7 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3908 +0.6 1.2 Cytochrome c553 compare
Psest_1745 +0.6 2.4 Flagellar motor component compare
Psest_2864 +0.6 1.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0259 +0.6 0.9 cell division ATP-binding protein FtsE compare
Psest_1794 +0.5 2.1 Flagellar motor protein compare
Psest_4145 +0.5 1.5 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_1963 +0.5 1.6 Peptidase inhibitor I78 family. compare
Psest_3819 +0.5 1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3250 +0.5 1.4 Rho termination factor, N-terminal domain. compare
Psest_4220 +0.5 1.2 Protein of unknown function (DUF2782). compare
Psest_2465 +0.5 1.9 hypothetical protein compare
Psest_3895 +0.5 1.4 hypothetical protein compare
Psest_3077 +0.5 1.3 Protein of unknown function (DUF3203). compare
Psest_2621 +0.5 2.1 TadE-like protein. compare
Psest_3176 +0.5 2.3 Predicted ATPase compare
Psest_4128 +0.5 0.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_4042 +0.5 1.8 hypothetical protein compare
Psest_1681 +0.5 1.7 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_0078 +0.5 1.0 hypothetical protein compare
Psest_0538 +0.5 4.9 Signal transduction histidine kinase compare
Psest_3518 +0.5 0.8 Transcriptional regulators compare
Psest_1632 +0.5 1.6 Predicted permeases compare
Psest_1078 +0.5 1.3 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_3522 +0.5 1.5 3-hydroxybutyrate dehydrogenase compare
Psest_2748 +0.5 0.9 Transcriptional regulator compare
Psest_3042 +0.5 0.9 Nitrate reductase cytochrome c-type subunit compare
Psest_1986 +0.5 0.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_1731 +0.5 1.2 flagellar biosynthetic protein FliO compare
Psest_1122 +0.5 4.1 putative adhesin (DUF1302) (from data) compare
Psest_3363 +0.5 1.5 hypothetical protein compare
Psest_1863 +0.5 1.0 hypothetical protein compare
Psest_1176 +0.5 1.3 Urea transporter compare
Psest_1367 +0.5 1.4 hypothetical protein compare
Psest_3206 +0.5 1.9 Uncharacterized protein conserved in bacteria compare
Psest_3143 +0.5 2.4 Uncharacterized protein conserved in bacteria compare
Psest_0227 +0.5 1.5 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_2016 +0.5 1.9 hypothetical protein compare
Psest_1909 +0.5 1.9 Phosphohistidine phosphatase SixA compare
Psest_3391 +0.5 0.9 Uncharacterized protein conserved in bacteria compare
Psest_3727 +0.5 1.8 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_3150 +0.5 1.9 hypothetical protein compare
Psest_2887 +0.5 1.2 Uncharacterized protein conserved in bacteria compare
Psest_4164 +0.5 1.4 flagellar biosynthetic protein FliS compare
Psest_2766 +0.5 0.7 hypothetical protein compare
Psest_1728 +0.5 1.8 Flagellar basal body-associated protein compare
Psest_1184 +0.5 1.7 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_0799 +0.5 1.5 Uncharacterized protein involved in response to NO compare
Psest_0823 +0.4 1.4 Transcriptional regulators compare
Psest_1215 +0.4 0.9 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_4054 +0.4 1.3 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_2752 +0.4 0.9 Uncharacterized protein conserved in bacteria compare
Psest_2135 +0.4 1.8 Peroxiredoxin compare
Psest_1580 +0.4 1.7 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_0855 +0.4 2.1 NAD-dependent aldehyde dehydrogenases compare
Psest_3122 +0.4 2.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1121 +0.4 2.1 Hypoxanthine-guanine phosphoribosyltransferase compare
Psest_0857 +0.4 0.7 Membrane transporters of cations and cationic drugs compare
Psest_3836 +0.4 1.8 L-lactate permease compare
Psest_1600 +0.4 0.9 hypothetical protein compare
Psest_1888 +0.4 0.6 Sua5/YciO/YrdC/YwlC family protein compare
Psest_1735 +0.4 1.9 flagellar biosynthetic protein FlhB compare
Psest_3056 +0.4 1.6 hypothetical protein compare
Psest_2794 +0.4 2.1 Predicted permease, DMT superfamily compare
Psest_3148 +0.4 0.7 hypothetical protein compare
Psest_3702 +0.4 1.7 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase compare
Psest_1737 +0.4 2.3 flagellar biosynthesis protein FlhA compare
Psest_1498 +0.4 0.8 tol-pal system-associated acyl-CoA thioesterase compare
Psest_0725 +0.4 0.7 Negative regulator of beta-lactamase expression compare
Psest_1729 +0.4 1.9 flagellar motor switch protein FliM compare
Psest_3520 +0.4 1.8 Short chain fatty acids transporter compare
Psest_0534 +0.4 1.9 hypothetical protein compare
Psest_1791 +0.4 1.3 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_3477 +0.4 1.1 Signal transduction histidine kinase compare
Psest_2039 +0.4 1.6 PQQ-dependent catabolism-associated CXXCW motif protein compare
Psest_4322 +0.4 1.7 Domain of unknown function (DUF1835)./Protein of unknown function. compare
Psest_1721 +0.4 0.9 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2724 +0.4 1.7 hypothetical protein compare
Psest_3409 +0.4 1.9 hypothetical protein compare
Psest_2681 +0.4 1.1 Uncharacterized protein conserved in bacteria compare
Psest_2965 +0.4 3.4 fagellar hook-basal body proteins compare
Psest_3492 +0.4 1.9 hypothetical protein compare
Psest_1382 +0.4 2.3 Transcription elongation factor compare
Psest_1720 +0.4 2.2 flagellar motor switch protein FliG compare
Psest_3743 +0.4 1.6 Regulator of sigma D compare
Psest_0260 +0.4 0.7 Cell division protein compare
Psest_0582 +0.4 2.4 hypothetical protein compare
Psest_3155 +0.4 1.2 hypothetical protein compare
Psest_2437 +0.4 0.9 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_1563 +0.4 0.6 Protein of unknown function (DUF548). compare
Psest_2513 +0.4 1.6 Predicted membrane protein compare
Psest_3039 +0.4 0.7 periplasmic nitrate reductase, NapE protein compare
Psest_2183 +0.4 1.7 Transcriptional regulator compare
Psest_1087 +0.4 0.7 uncharacterized peroxidase-related enzyme compare
Psest_3332 +0.4 2.1 K+-dependent Na+/Ca+ exchanger related-protein compare
Psest_1845 +0.4 2.2 ATPase components of ABC transporters with duplicated ATPase domains compare
Psest_1723 +0.4 2.0 flagellar export protein FliJ compare
Psest_1208 +0.4 2.2 guanine deaminase compare
Psest_2906 +0.4 1.3 tRNA_Thr_CGT compare
Psest_3371 +0.4 2.2 type IV pilus modification protein PilV compare
Psest_0638 +0.4 2.2 Predicted lactoylglutathione lyase compare
Psest_2652 +0.4 1.3 Protein of unknown function (DUF1653). compare
Psest_2041 +0.4 1.8 ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system compare
Psest_0506 +0.4 1.5 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Psest_0459 +0.4 2.7 Predicted carbamoyl transferase, NodU family compare
Psest_1899 +0.4 1.5 ABC-type sugar transport systems, ATPase components compare
Psest_3896 +0.4 0.9 arsenite-activated ATPase ArsA compare
Psest_1734 +0.4 1.6 flagellar biosynthetic protein FliR compare
Psest_0568 +0.4 1.2 pseudouridine synthase compare
Psest_0526 +0.4 0.8 hypothetical protein compare
Psest_0716 +0.4 1.1 Protein of unknown function (DUF3094). compare
Psest_0656 +0.4 1.6 Methyl-accepting chemotaxis protein compare
Psest_1912 +0.4 1.6 Protein of unknown function (DUF1260). compare
Psest_0632 +0.4 1.2 hypothetical protein compare
Psest_2320 +0.4 2.0 2-methylcitrate synthase/citrate synthase II compare
Psest_1161 +0.4 0.6 E3 Ubiquitin ligase. compare
Psest_0239 +0.4 1.9 formamidopyrimidine-DNA glycosylase (fpg) compare
Psest_2243 +0.4 0.5 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3177 +0.4 0.6 hypothetical protein compare
Psest_1435 +0.4 1.9 Predicted SAM-dependent methyltransferases compare
Psest_4160 +0.4 1.5 RNA polymerase sigma factor, FliA/WhiG family compare
Psest_3839 +0.4 1.3 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_1725 +0.3 2.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1648 +0.3 2.2 ATP-dependent DNA ligase compare
Psest_1643 +0.3 0.6 hypothetical protein compare
Psest_2276 +0.3 1.5 Aldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
Psest_0929 +0.3 1.9 ABC-type proline/glycine betaine transport systems, periplasmic components compare
Psest_1853 +0.3 2.0 MoxR-like ATPases compare
Psest_3222 +0.3 0.9 Putative threonine efflux protein compare
Psest_1997 +0.3 0.9 6-phosphogluconolactonase compare
Psest_1999 +0.3 0.5 pseudouridine synthase compare
Psest_1514 +0.3 1.7 Glycine cleavage system regulatory protein compare
Psest_3768 +0.3 1.6 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_1651 +0.3 1.4 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_3564 +0.3 1.2 Uncharacterized protein conserved in bacteria compare
Psest_0046 +0.3 1.7 Uncharacterized protein conserved in bacteria compare
Psest_0045 +0.3 1.8 hypothetical protein compare
Psest_2337 +0.3 1.6 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component compare
Psest_3573 +0.3 1.0 dTDP-4-dehydrorhamnose reductase compare
Psest_2341 +0.3 1.1 Lipase chaperone compare
Psest_2769 +0.3 1.3 hypothetical protein compare
Psest_1722 +0.3 2.2 flagellar protein export ATPase FliI compare
Psest_1524 +0.3 1.1 Sel1 repeat. compare
Psest_3367 +0.3 0.6 translation initation factor SUI1, putative, prokaryotic compare
Psest_1994 +0.3 1.1 Amidases related to nicotinamidase compare
Psest_3536 +0.3 0.5 hypothetical protein compare
Psest_0563 +0.3 1.1 urea ABC transporter, ATP-binding protein UrtE compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Proline in Pseudomonas stutzeri RCH2

For nitrogen source L-Proline across organisms