Experiment set13H36 for Pseudomonas stutzeri RCH2

Compare to:

LB with Doxycycline hyclate 0.0002 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_0309 -4.9 -1.4 RND family efflux transporter, MFP subunit compare
Psest_3307 -4.8 -8.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1871 -4.7 -10.6 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_1922 -4.5 -15.2 aminopeptidase N, Escherichia coli type compare
Psest_0311 -4.3 -8.6 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_3884 -4.2 -1.0 Signal transduction histidine kinase compare
Psest_3305 -3.9 -10.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0310 -3.9 -4.1 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3304 -3.9 -6.9 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3883 -3.8 -9.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2712 -3.7 -6.1 Surface lipoprotein compare
Psest_3303 -3.6 -5.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3351 -3.5 -7.0 peptide chain release factor 3 compare
Psest_0466 -3.4 -4.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0691 -3.3 -15.0 ribonuclease R compare
Psest_0457 -3.1 -3.3 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3306 -3.0 -5.0 conserved hypothetical integral membrane protein compare
Psest_3990 -2.9 -10.2 PAP2 superfamily. compare
Psest_0097 -2.9 -2.4 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3247 -2.8 -1.9 Uncharacterized membrane protein compare
Psest_2066 -2.7 -1.5 ABC-type uncharacterized transport system, permease component compare
Psest_0013 -2.7 -7.3 Lauroyl/myristoyl acyltransferase compare
Psest_2757 -2.3 -1.2 hypothetical protein compare
Psest_0212 -2.3 -2.7 exodeoxyribonuclease V, gamma subunit compare
Psest_0482 -2.2 -4.5 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_1492 -2.2 -9.6 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0442 -2.2 -2.1 ATPases of the AAA+ class compare
Psest_0257 -2.1 -3.0 Predicted Zn-dependent peptidases compare
Psest_0485 -2.1 -3.5 clan AA aspartic protease, TIGR02281 family compare
Psest_2018 -2.1 -2.5 Uncharacterized conserved protein compare
Psest_2017 -2.1 -3.8 Predicted acyltransferase compare
Psest_4128 -2.1 -1.6 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0558 -2.1 -0.8 urease, beta subunit compare
Psest_3816 -2.0 -1.0 DNA-directed RNA polymerase, omega subunit compare
Psest_0325 -2.0 -11.5 Putative threonine efflux protein compare
Psest_0872 -2.0 -1.2 Helix-turn-helix. compare
Psest_0998 -2.0 -2.0 poly(A) polymerase compare
Psest_1679 -1.9 -1.6 ribonuclease, Rne/Rng family compare
Psest_0191 -1.8 -0.7 PAS domain S-box compare
Psest_0744 -1.8 -0.9 Uncharacterized conserved protein compare
Psest_0357 -1.8 -2.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3092 -1.8 -1.3 ribonuclease III, bacterial compare
Psest_3767 -1.8 -4.2 tyrosine recombinase XerC compare
Psest_2855 -1.7 -1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3927 -1.7 -3.8 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_0498 -1.7 -1.0 ribosome small subunit-dependent GTPase A compare
Psest_2946 -1.7 -2.9 septum site-determining protein MinD compare
Psest_3045 -1.7 -1.5 Cold shock proteins compare
Psest_1717 -1.7 -3.6 benzoate transporter compare
Psest_4044 -1.7 -1.6 type I site-specific deoxyribonuclease, HsdR family compare
Psest_4126 -1.6 -1.9 Predicted peroxiredoxins compare
Psest_3456 -1.6 -1.5 RNA polymerase sigma factor, sigma-70 family compare
Psest_2976 -1.6 -1.3 hypothetical protein compare
Psest_0186 -1.6 -4.1 Protein-disulfide isomerase compare
Psest_4095 -1.6 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3317 -1.6 -4.6 Phosphotransferase System HPr (HPr) Family compare
Psest_0193 -1.6 -0.8 conserved hypothetical protein compare
Psest_2646 -1.6 -1.7 SOS regulatory protein LexA compare
Psest_1111 -1.6 -3.2 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1986 -1.5 -0.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_3100 -1.5 -3.6 RNA polymerase sigma factor RpoE compare
Psest_0520 -1.5 -0.7 hypothetical protein compare
Psest_0789 -1.5 -4.7 hypothetical protein compare
Psest_2756 -1.5 -1.1 hypothetical protein compare
Psest_2651 -1.5 -2.9 DNA topoisomerase I, bacterial compare
Psest_1510 -1.5 -3.2 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3391 -1.4 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0028 -1.4 -4.1 Coproporphyrinogen III oxidase compare
Psest_4010 -1.4 -0.9 peroxiredoxin, OsmC subfamily compare
Psest_1472 -1.4 -5.5 Protein of unknown function (DUF3108). compare
Psest_1183 -1.4 -1.9 hydroxyisourate hydrolase compare
Psest_0385 -1.4 -1.6 Conserved secreted protein compare
Psest_0390 -1.4 -2.6 Short-chain dehydrogenases of various substrate specificities compare
Psest_1153 -1.4 -10.0 Cation/multidrug efflux pump conserved
Psest_1804 -1.3 -1.4 Superfamily II DNA and RNA helicases compare
Psest_3777 -1.3 -2.8 diguanylate cyclase (GGDEF) domain compare
Psest_0312 -1.3 -4.8 Superfamily II DNA and RNA helicases compare
Psest_1498 -1.3 -1.7 tol-pal system-associated acyl-CoA thioesterase compare
Psest_4303 -1.3 -1.4 HEAT repeat. compare
Psest_2334 -1.3 -8.7 Uncharacterized protein conserved in bacteria compare
Psest_0426 -1.3 -2.5 Transposase and inactivated derivatives compare
Psest_1752 -1.3 -1.2 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_3496 -1.3 -1.3 Predicted metal-binding protein compare
Psest_2798 -1.3 -1.9 Truncated hemoglobins compare
Psest_3389 -1.3 -2.7 hypothetical protein compare
Psest_2766 -1.3 -0.7 hypothetical protein compare
Psest_3662 -1.3 -2.1 DnaJ-domain-containing proteins 1 compare
Psest_0799 -1.2 -2.2 Uncharacterized protein involved in response to NO compare
Psest_3063 -1.2 -3.4 hypothetical protein compare
Psest_0225 -1.2 -1.6 Predicted permease, DMT superfamily compare
Psest_1540 -1.2 -1.2 biotin-dependent carboxylase uncharacterized domain compare
Psest_1204 -1.2 -1.2 Transcriptional regulators compare
Psest_2265 -1.2 -1.8 Outer membrane protein compare
Psest_3478 -1.2 -0.8 Cytochrome B561 compare
Psest_4325 -1.2 -1.7 hypothetical protein compare
Psest_1774 -1.2 -1.7 Glutathione peroxidase compare
Psest_1531 -1.2 -5.1 hypothetical protein compare
Psest_1700 -1.2 -1.8 Transcriptional regulator compare
Psest_3936 -1.2 -2.8 ATP-dependent protease HslVU, peptidase subunit compare
Psest_1154 -1.2 -5.0 RND family efflux transporter, MFP subunit compare
Psest_2321 -1.2 -3.5 methylisocitrate lyase compare
Psest_4064 -1.2 -2.1 Lactate dehydrogenase and related dehydrogenases compare
Psest_3128 -1.1 -2.6 Protein-disulfide isomerase compare
Psest_1642 -1.1 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_0708 -1.1 -1.0 outer membrane assembly lipoprotein YfiO compare
Psest_2001 -1.1 -0.5 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_4283 -1.1 -5.5 Spermidine/putrescine-binding periplasmic protein compare
Psest_2906 -1.1 -2.9 tRNA_Thr_CGT compare
Psest_2775 -1.1 -2.2 Glycerol-3-phosphate dehydrogenase compare
Psest_2768 -1.1 -1.7 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_1103 -1.1 -1.7 GTP-binding protein YchF compare
Psest_2240 -1.1 -1.1 hypothetical protein compare
Psest_3735 -1.1 -1.1 uncharacterized domain 1 compare
Psest_0237 -1.1 -2.2 intracellular protease, PfpI family compare
Psest_3228 -1.1 -4.8 Zn-dependent protease with chaperone function compare
Psest_0609 -1.1 -1.0 hypothetical protein compare
Psest_0174 -1.1 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_1496 -1.1 -0.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_0050 -1.1 -3.3 Predicted acetyltransferase compare
Psest_1704 -1.1 -0.8 Dehydrogenases (flavoproteins) compare
Psest_1167 -1.1 -0.7 hypothetical protein compare
Psest_0181 -1.0 -3.8 glycine cleavage system T protein compare
Psest_1444 -1.0 -2.6 Curli production assembly/transport component CsgF. compare
Psest_3178 -1.0 -2.4 formyltetrahydrofolate deformylase compare
Psest_0814 -1.0 -1.9 MoxR-like ATPases compare
Psest_3129 -1.0 -0.7 tyrosine recombinase XerD compare
Psest_4310 -1.0 -1.1 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1054 -1.0 -3.2 Diaminopimelate decarboxylase compare
Psest_2025 -1.0 -0.7 cold shock domain protein CspD compare
Psest_1518 -1.0 -1.5 tRNA_Ser_CGA compare
Psest_4241 -1.0 -2.3 hypothetical protein compare
Psest_0692 -1.0 -1.6 rRNA methylase, putative, group 3 compare
Psest_2015 -1.0 -2.1 Type II secretory pathway, component PulD compare
Psest_2626 -1.0 -2.1 Flp pilus assembly protein CpaB compare
Psest_3865 -1.0 -3.2 Predicted integral membrane protein (DUF2269). compare
Psest_2448 -1.0 -2.5 AraC-type DNA-binding domain-containing proteins compare
Psest_1938 -1.0 -3.7 hypothetical protein compare
Psest_3908 -1.0 -0.9 Cytochrome c553 compare
Psest_1056 -1.0 -1.1 2-isopropylmalate synthase, bacterial type compare
Psest_1310 -1.0 -3.8 ABC-type branched-chain amino acid transport system, permease component compare
Psest_1012 -1.0 -2.0 Signal transduction histidine kinase compare
Psest_3720 -1.0 -6.5 penicillin-binding protein, 1A family compare
Psest_2457 -1.0 -2.2 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_2630 -1.0 -1.9 hypothetical protein compare
Psest_2668 -1.0 -2.3 Lactoylglutathione lyase and related lyases compare
Psest_3183 -1.0 -4.4 hypothetical protein compare
Psest_0015 -1.0 -1.9 Tetratricopeptide repeat. compare
Psest_2714 -1.0 -1.4 7-cyano-7-deazaguanine reductase compare
Psest_4211 -1.0 -1.8 conserverd hypothetical protein compare
Psest_1625 -1.0 -2.2 hypothetical protein compare
Psest_2048 -0.9 -1.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1505 -0.9 -1.1 Organic radical activating enzymes compare
Psest_2525 -0.9 -2.0 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_1923 -0.9 -2.2 adhesin-associated BNR repeat protein (from data) compare
Psest_3301 -0.9 -1.5 Predicted transcriptional regulator, BolA superfamily compare
Psest_0925 -0.9 -2.3 Uncharacterized conserved protein compare
Psest_0867 -0.9 -1.2 hypothetical protein compare
Psest_2612 -0.9 -1.7 hypothetical protein compare
Psest_4177 -0.9 -1.2 flagellar biosynthetic protein FliP compare
Psest_3756 -0.9 -1.4 hypothetical protein compare
Psest_2243 -0.9 -0.7 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1939 -0.9 -3.7 Tetratricopeptide repeat. compare
Psest_3458 -0.9 -1.9 hypothetical protein compare
Psest_3206 -0.9 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_3803 -0.9 -0.6 DNA repair protein radc compare
Psest_1870 -0.9 -0.6 Transcriptional regulators compare
Psest_0091 -0.9 -2.8 phosphonate C-P lyase system protein PhnL compare
Psest_2527 -0.9 -4.3 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1942 -0.9 -3.3 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_2022 -0.9 -1.7 ADP-ribose pyrophosphatase compare
Psest_2703 -0.9 -1.8 ATPases involved in chromosome partitioning compare
Psest_0459 -0.9 -4.7 Predicted carbamoyl transferase, NodU family compare
Psest_2944 -0.9 -1.1 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_0082 -0.9 -1.4 Domain of unknown function (DUF892). compare
Psest_1504 -0.9 -2.7 tol-pal system protein YbgF compare
Psest_1476 -0.9 -3.8 Predicted permease compare
Psest_2483 -0.9 -3.5 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1303 -0.9 -1.6 hypothetical protein compare
Psest_2331 -0.8 -4.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_4307 -0.8 -1.4 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_3784 -0.8 -1.4 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1859 -0.8 -2.4 Glutathione S-transferase compare
Psest_3022 -0.8 -2.2 Predicted membrane protein compare
Psest_1305 -0.8 -1.8 Heat shock protein compare
Psest_1381 -0.8 -2.9 Predicted alpha/beta hydrolase compare
Psest_1683 -0.8 -2.2 MAF protein compare
Psest_3237 -0.8 -0.7 hypothetical protein compare
Psest_2977 -0.8 -2.6 hypothetical protein compare
Psest_4103 -0.8 -0.7 AraC-type DNA-binding domain-containing proteins compare
Psest_2104 -0.8 -1.0 IscR-regulated protein YhgI compare
Psest_1516 -0.8 -1.4 Uncharacterized lipoprotein compare
Psest_3692 -0.8 -2.1 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_1145 -0.8 -1.8 Predicted methylated DNA-protein cysteine methyltransferase compare
Psest_3209 -0.8 -2.3 NADH:flavin oxidoreductases, Old Yellow Enzyme family compare
Psest_0584 -0.8 -2.4 hypothetical protein compare
Psest_3464 -0.8 -3.8 Signal transduction histidine kinase conserved
Psest_2850 -0.8 -0.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2085 -0.8 -2.5 Periplasmic serine proteases (ClpP class) compare
Psest_2652 -0.8 -1.9 Protein of unknown function (DUF1653). compare
Psest_1160 -0.8 -1.7 Uncharacterized conserved protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Doxycycline hyclate in Pseudomonas stutzeri RCH2

For stress Doxycycline hyclate across organisms