Experiment set13H35 for Pseudomonas stutzeri RCH2

Compare to:

LB with Benzethonium chloride 0.01 mM

200 most important genes:

  gene name fitness t score description  
Psest_3910 -6.3 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_2712 -3.9 -5.3 Surface lipoprotein compare
Psest_1496 -3.8 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_1153 -3.8 -24.6 Cation/multidrug efflux pump conserved
Psest_1154 -3.7 -11.6 RND family efflux transporter, MFP subunit conserved
Psest_0476 -3.3 -9.0 type I secretion outer membrane protein, TolC family compare
Psest_1204 -3.0 -3.3 Transcriptional regulators compare
Psest_1871 -3.0 -8.5 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_1510 -2.9 -2.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_4128 -2.8 -1.7 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3338 -2.7 -1.4 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1167 -2.6 -1.1 hypothetical protein compare
Psest_3351 -2.6 -7.6 peptide chain release factor 3 compare
Psest_0542 -2.6 -12.2 AMP nucleosidase compare
Psest_1366 -2.5 -1.7 hypothetical protein compare
Psest_2714 -2.5 -2.3 7-cyano-7-deazaguanine reductase compare
Psest_3929 -2.5 -5.6 hypothetical protein compare
Psest_1922 -2.4 -10.5 aminopeptidase N, Escherichia coli type compare
Psest_1870 -2.4 -1.1 Transcriptional regulators compare
Psest_2946 -2.4 -1.6 septum site-determining protein MinD compare
Psest_3305 -2.4 -8.8 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0191 -2.3 -1.1 PAS domain S-box compare
Psest_3306 -2.2 -4.5 conserved hypothetical integral membrane protein compare
Psest_2976 -2.2 -1.3 hypothetical protein compare
Psest_0442 -2.2 -1.5 ATPases of the AAA+ class compare
Psest_0466 -2.1 -4.2 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1762 -2.1 -2.4 cytochrome c-type biogenesis protein CcmI compare
Psest_3339 -2.1 -6.1 Signal transduction histidine kinase compare
Psest_2581 -2.1 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_0725 -2.1 -1.7 Negative regulator of beta-lactamase expression compare
Psest_3304 -2.0 -6.1 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2324 -2.0 -11.7 hypothetical protein compare
Psest_2872 -2.0 -1.8 protein RecA compare
Psest_2590 -2.0 -1.0 3-isopropylmalate dehydratase, small subunit compare
Psest_3151 -2.0 -2.9 hypothetical protein compare
Psest_4310 -2.0 -1.8 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3307 -1.9 -5.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2651 -1.9 -3.5 DNA topoisomerase I, bacterial compare
Psest_3303 -1.9 -5.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2325 -1.9 -7.7 alpha-L-glutamate ligase-related protein compare
Psest_1516 -1.9 -2.5 Uncharacterized lipoprotein compare
Psest_0498 -1.8 -1.1 ribosome small subunit-dependent GTPase A compare
Psest_0575 -1.8 -0.7 HrpA-like helicases compare
Psest_3565 -1.8 -1.4 hypothetical protein compare
Psest_3070 -1.8 -1.8 3-oxoadipyl-CoA thiolase compare
Psest_0257 -1.8 -2.8 Predicted Zn-dependent peptidases compare
Psest_0161 -1.7 -2.5 Membrane-bound metallopeptidase compare
Psest_3937 -1.7 -1.4 ATP-dependent protease HslVU, ATPase subunit compare
Psest_1700 -1.7 -3.5 Transcriptional regulator compare
Psest_0998 -1.6 -1.8 poly(A) polymerase compare
Psest_2104 -1.6 -1.7 IscR-regulated protein YhgI compare
Psest_1860 -1.6 -2.3 Uncharacterized conserved protein compare
Psest_2775 -1.6 -2.8 Glycerol-3-phosphate dehydrogenase compare
Psest_0805 -1.5 -2.3 hypothetical protein compare
Psest_3391 -1.5 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3395 -1.5 -0.8 hypothetical protein compare
Psest_4243 -1.5 -1.6 type VI secretion lipoprotein, VC_A0113 family compare
Psest_1444 -1.5 -2.8 Curli production assembly/transport component CsgF. compare
Psest_2017 -1.5 -3.7 Predicted acyltransferase compare
Psest_4044 -1.5 -2.4 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1242 -1.5 -1.9 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2096 -1.5 -2.4 Domain of unknown function (DUF1883). compare
Psest_2566 -1.5 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_0952 -1.4 -1.9 Uncharacterized conserved protein compare
Psest_0958 -1.4 -5.7 Oligoketide cyclase/lipid transport protein compare
Psest_3088 -1.4 -2.8 Protein of unknown function (DUF2905). compare
Psest_3301 -1.4 -2.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_0028 -1.4 -4.1 Coproporphyrinogen III oxidase compare
Psest_1879 -1.4 -2.4 Trk-type K+ transport systems, membrane components compare
Psest_3413 -1.4 -2.0 hypothetical protein compare
Psest_0212 -1.3 -1.3 exodeoxyribonuclease V, gamma subunit compare
Psest_4191 -1.3 -2.4 Transcriptional regulator compare
Psest_2333 -1.3 -0.7 Protein of unknown function (DUF3359). compare
Psest_0515 -1.3 -2.8 rare lipoprotein A compare
Psest_2967 -1.3 -2.5 flagellar basal-body rod protein FlgC compare
Psest_4078 -1.3 -1.5 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0716 -1.3 -1.6 Protein of unknown function (DUF3094). compare
Psest_1631 -1.3 -1.4 Uncharacterized conserved small protein compare
Psest_0457 -1.3 -2.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2855 -1.3 -1.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0969 -1.3 -1.6 transcription elongation factor GreA compare
Psest_3323 -1.3 -3.4 ribonuclease, Rne/Rng family compare
Psest_3904 -1.2 -1.3 hypothetical protein compare
Psest_1397 -1.2 -1.9 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_2637 -1.2 -1.0 putative methyltransferase, YaeB/AF_0241 family compare
Psest_2090 -1.2 -1.9 Protein of unknown function (DUF2970). compare
Psest_1008 -1.2 -0.7 hypothetical protein compare
Psest_3092 -1.2 -1.1 ribonuclease III, bacterial compare
Psest_0393 -1.2 -3.4 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3550 -1.2 -1.9 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_3024 -1.2 -3.6 cytochrome d oxidase, subunit II (cydB) compare
Psest_2323 -1.2 -5.8 Uncharacterized protein conserved in archaea compare
Psest_4142 -1.2 -1.2 hypothetical protein compare
Psest_2446 -1.2 -1.8 acetyl-CoA acetyltransferases compare
Psest_3756 -1.2 -1.6 hypothetical protein compare
Psest_4285 -1.2 -5.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Psest_0644 -1.2 -3.4 siderophore ferric iron reductase, AHA_1954 family compare
Psest_1049 -1.2 -2.9 Uncharacterized paraquat-inducible protein A compare
Psest_2067 -1.2 -1.0 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0277 -1.1 -0.8 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3908 -1.1 -1.0 Cytochrome c553 compare
Psest_1804 -1.1 -1.2 Superfamily II DNA and RNA helicases compare
Psest_3398 -1.1 -3.5 large conductance mechanosensitive channel protein compare
Psest_2809 -1.1 -2.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1215 -1.1 -1.3 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_4064 -1.1 -1.9 Lactate dehydrogenase and related dehydrogenases compare
Psest_3883 -1.1 -4.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4256 -1.1 -1.8 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0791 -1.1 -3.7 Acyl-CoA dehydrogenases compare
Psest_3226 -1.1 -0.6 Predicted membrane protein compare
Psest_1679 -1.1 -1.0 ribonuclease, Rne/Rng family compare
Psest_1659 -1.1 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3662 -1.1 -1.8 DnaJ-domain-containing proteins 1 compare
Psest_2131 -1.1 -2.9 Acetyltransferases compare
Psest_3737 -1.1 -3.8 Putative threonine efflux protein compare
Psest_2585 -1.1 -0.5 pseudouridylate synthase I compare
Psest_1166 -1.1 -0.8 transcriptional regulator, ArgP family compare
Psest_2098 -1.1 -3.0 Predicted ATPase/kinase involved in NAD metabolism compare
Psest_1182 -1.1 -3.0 Transcriptional regulator compare
Psest_0455 -1.1 -3.9 ADP-heptose:LPS heptosyltransferase compare
Psest_0164 -1.0 -0.4 Glutaredoxin, GrxC family compare
Psest_4106 -1.0 -2.1 formate dehydrogenase, gamma subunit compare
Psest_0285 -1.0 -4.5 pilus retraction protein PilT compare
Psest_1543 -1.0 -2.0 Predicted transcription regulator, contains HTH domain (MarR family) compare
Psest_2744 -1.0 -0.7 Uncharacterized conserved protein compare
Psest_1158 -1.0 -4.8 Predicted thiol oxidoreductase compare
Psest_3045 -1.0 -1.0 Cold shock proteins compare
Psest_0744 -1.0 -0.7 Uncharacterized conserved protein compare
Psest_1065 -1.0 -1.0 hypothetical protein compare
Psest_1388 -1.0 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_1315 -1.0 -1.1 hypothetical protein compare
Psest_3810 -1.0 -0.6 orotate phosphoribosyltransferase compare
Psest_3646 -1.0 -3.9 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_4307 -1.0 -1.3 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_1640 -1.0 -4.7 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_2791 -1.0 -1.6 hypothetical protein compare
Psest_4151 -1.0 -1.7 Flagellar hook capping protein compare
Psest_2894 -1.0 -1.7 addiction module antidote protein, HigA family compare
Psest_3050 -1.0 -2.4 tRNA_Gly_CCC compare
Psest_1837 -1.0 -2.6 Endoglucanase compare
Psest_3757 -1.0 -2.0 TIGR02647 family protein compare
Psest_2358 -0.9 -1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2018 -0.9 -1.7 Uncharacterized conserved protein compare
Psest_0259 -0.9 -0.6 cell division ATP-binding protein FtsE compare
Psest_2229 -0.9 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0097 -0.9 -1.0 phosphonates metabolism transcriptional regulator PhnF compare
Psest_2177 -0.9 -2.4 Protein of unknown function (DUF1652). compare
Psest_1613 -0.9 -3.1 hypothetical protein compare
Psest_2949 -0.9 -3.9 Aspartyl aminopeptidase compare
Psest_1159 -0.9 -2.8 Uncharacterized iron-regulated protein compare
Psest_2091 -0.9 -1.9 Molecular chaperone (small heat shock protein) compare
Psest_1480 -0.9 -1.7 arsenate reductase (glutaredoxin) compare
Psest_0691 -0.9 -4.9 ribonuclease R compare
Psest_0024 -0.9 -3.7 LysM domain. compare
Psest_2935 -0.9 -2.1 hypothetical protein compare
Psest_1639 -0.9 -1.9 23S rRNA (uracil-5-)-methyltransferase RumA compare
Psest_0031 -0.9 -0.7 Uncharacterized conserved protein compare
Psest_3944 -0.9 -1.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1625 -0.9 -2.0 hypothetical protein compare
Psest_2907 -0.9 -0.7 Protein of unknown function (DUF3618). compare
Psest_1185 -0.9 -1.2 heavy metal response regulator compare
Psest_1428 -0.9 -1.5 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_1999 -0.9 -0.6 pseudouridine synthase compare
Psest_0237 -0.9 -2.1 intracellular protease, PfpI family compare
Psest_3816 -0.9 -0.6 DNA-directed RNA polymerase, omega subunit compare
Psest_4170 -0.9 -1.0 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3084 -0.9 -1.1 methyltransferase, putative compare
Psest_1904 -0.9 -2.4 Arabinose efflux permease compare
Psest_1457 -0.9 -0.9 FOG: Ankyrin repeat compare
Psest_4003 -0.9 -2.1 TIGR00153 family protein compare
Psest_4102 -0.8 -2.0 peroxiredoxin, Ohr subfamily compare
Psest_4172 -0.8 -2.2 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_3772 -0.8 -2.2 ammonium transporter compare
Psest_1157 -0.8 -2.0 Predicted periplasmic lipoprotein compare
Psest_0708 -0.8 -0.8 outer membrane assembly lipoprotein YfiO compare
Psest_1677 -0.8 -1.4 Protein-tyrosine-phosphatase compare
Psest_1417 -0.8 -0.6 hypothetical protein compare
Psest_4157 -0.8 -2.3 hypothetical protein compare
Psest_1814 -0.8 -4.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1013 -0.8 -1.8 phosphoribosylamine--glycine ligase compare
Psest_1445 -0.8 -1.5 Curli assembly protein CsgE. compare
Psest_4340 -0.8 -1.7 Protein of unknown function (DUF3617). compare
Psest_1056 -0.8 -1.0 2-isopropylmalate synthase, bacterial type compare
Psest_3159 -0.8 -3.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1492 -0.8 -2.9 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_2698 -0.8 -2.3 benzoate 1,2-dioxygenase, small subunit compare
Psest_3139 -0.8 -2.1 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Psest_0355 -0.8 -0.8 Glycine cleavage system regulatory protein compare
Psest_0189 -0.8 -3.3 Negative regulator of beta-lactamase expression compare
Psest_1704 -0.8 -0.7 Dehydrogenases (flavoproteins) compare
Psest_4178 -0.8 -1.5 hypothetical protein compare
Psest_2945 -0.8 -0.3 septum site-determining protein MinC compare
Psest_2238 -0.8 -1.4 hypothetical protein compare
Psest_0987 -0.8 -1.2 Predicted periplasmic or secreted lipoprotein compare
Psest_1226 -0.8 -1.3 hypothetical protein compare
Psest_1227 -0.8 -1.5 Predicted SAM-dependent methyltransferase compare
Psest_0006 -0.8 -1.9 alkyl hydroperoxide reductase, F subunit compare
Psest_2337 -0.8 -2.3 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component compare
Psest_2437 -0.8 -1.8 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_1197 -0.8 -2.1 Ureidoglycolate hydrolase compare


Specific Phenotypes

For 5 genes in this experiment

For stress Benzethonium chloride in Pseudomonas stutzeri RCH2

For stress Benzethonium chloride across organisms