Experiment set13H31 for Pseudomonas stutzeri RCH2

Compare to:

Urea nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3317 -7.8 -5.4 Phosphotransferase System HPr (HPr) Family compare
Psest_0152 -6.9 -6.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_3647 -6.8 -6.6 Indole-3-glycerol phosphate synthase compare
Psest_0508 -6.8 -9.3 gamma-glutamyl phosphate reductase compare
Psest_3862 -6.4 -15.4 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3710 -6.2 -17.1 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3650 -6.2 -16.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3711 -6.1 -19.3 Glutamate synthase domain 2 compare
Psest_0155 -6.1 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2584 -6.0 -5.9 Phosphoribosylanthranilate isomerase compare
Psest_3864 -6.0 -15.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3648 -6.0 -10.0 anthranilate phosphoribosyltransferase compare
Psest_3384 -6.0 -7.1 glutamate 5-kinase compare
Psest_2591 -6.0 -4.1 3-isopropylmalate dehydratase, large subunit compare
Psest_0325 -5.8 -13.6 Putative threonine efflux protein compare
Psest_0153 -5.8 -14.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0062 -5.8 -15.3 tryptophan synthase, alpha subunit compare
Psest_3298 -5.8 -14.0 histidinol dehydrogenase compare
Psest_0326 -5.7 -20.3 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3866 -5.5 -21.1 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0063 -5.5 -12.3 tryptophan synthase, beta subunit compare
Psest_3649 -5.5 -11.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3932 -5.5 -6.5 nitrogen regulation protein NR(I) compare
Psest_3818 -5.4 -11.5 endoribonuclease L-PSP, putative compare
Psest_3226 -5.4 -1.7 Predicted membrane protein compare
Psest_0279 -5.3 -8.3 methionine biosynthesis protein MetW compare
Psest_2578 -5.2 -17.7 O-succinylhomoserine sulfhydrylase compare
Psest_3299 -5.0 -17.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0952 -4.9 -4.8 Uncharacterized conserved protein compare
Psest_0280 -4.9 -17.8 homoserine O-acetyltransferase compare
Psest_3943 -4.8 -7.8 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3944 -4.8 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0313 -4.7 -8.4 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1037 -4.5 -4.7 acetolactate synthase, small subunit compare
Psest_3931 -4.4 -6.8 Signal transduction histidine kinase, nitrogen specific compare
Psest_2590 -4.4 -2.0 3-isopropylmalate dehydratase, small subunit compare
Psest_2589 -4.4 -12.3 3-isopropylmalate dehydrogenase compare
Psest_1473 -4.4 -10.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0953 -4.3 -12.8 iron-sulfur cluster-binding protein compare
Psest_0954 -4.2 -7.9 Fe-S oxidoreductase compare
Psest_2333 -4.1 -1.9 Protein of unknown function (DUF3359). compare
Psest_2650 -4.1 -4.8 hypothetical protein compare
Psest_2845 -4.0 -14.4 [Protein-PII] uridylyltransferase compare
Psest_0687 -4.0 -10.8 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1295 -4.0 -9.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2579 -3.8 -4.5 amidophosphoribosyltransferase compare
Psest_2088 -3.6 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_0327 -3.6 -7.6 Transcriptional regulator compare
Psest_1772 -3.5 -7.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3297 -3.5 -14.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_4084 -3.3 -19.5 oxaloacetate decarboxylase alpha subunit compare
Psest_2329 -3.2 -21.3 Transcriptional regulator compare
Psest_4085 -3.2 -17.3 Biotin carboxylase compare
Psest_3960 -3.0 -2.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1496 -2.9 -2.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_3998 -2.9 -11.5 glutamate--cysteine ligase compare
Psest_1686 -2.6 -7.2 fatty acid/phospholipid synthesis protein PlsX compare
Psest_4086 -2.6 -12.5 Transcriptional regulator compare
Psest_1013 -2.5 -3.0 phosphoribosylamine--glycine ligase compare
Psest_3721 -2.5 -9.1 Malic enzyme compare
Psest_0411 -2.5 -12.8 biotin synthetase compare
Psest_1474 -2.4 -1.7 phosphoribosylaminoimidazole synthetase compare
Psest_3809 -2.3 -7.7 hypothetical protein compare
Psest_0498 -2.3 -2.3 ribosome small subunit-dependent GTPase A compare
Psest_3159 -2.3 -8.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_4298 -2.2 -1.6 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1640 -2.1 -11.9 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0442 -2.0 -4.3 ATPases of the AAA+ class compare
Psest_0412 -2.0 -10.7 8-amino-7-oxononanoate synthase compare
Psest_0955 -2.0 -5.5 D,L-lactate:H+ symporter (from data) compare
Psest_0413 -2.0 -7.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0306 -1.9 -12.8 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_1012 -1.9 -6.0 Signal transduction histidine kinase compare
Psest_2324 -1.8 -14.0 hypothetical protein compare
Psest_0951 -1.8 -10.0 FAD/FMN-containing dehydrogenases compare
Psest_3351 -1.8 -7.9 peptide chain release factor 3 compare
Psest_2714 -1.8 -3.7 7-cyano-7-deazaguanine reductase compare
Psest_2104 -1.7 -2.6 IscR-regulated protein YhgI compare
Psest_0415 -1.7 -4.7 dethiobiotin synthase compare
Psest_0558 -1.7 -1.3 urease, beta subunit compare
Psest_2090 -1.7 -3.2 Protein of unknown function (DUF2970). compare
Psest_3338 -1.6 -2.4 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1695 -1.6 -5.7 Tfp pilus assembly protein PilZ compare
Psest_2325 -1.6 -9.6 alpha-L-glutamate ligase-related protein compare
Psest_3288 -1.6 -10.3 type IV-A pilus assembly ATPase PilB compare
Psest_1679 -1.5 -2.6 ribonuclease, Rne/Rng family compare
Psest_3178 -1.5 -3.6 formyltetrahydrofolate deformylase compare
Psest_2323 -1.5 -11.4 Uncharacterized protein conserved in archaea compare
Psest_1505 -1.5 -2.5 Organic radical activating enzymes compare
Psest_0491 -1.5 -9.9 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0297 -1.5 -4.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1292 -1.5 -8.9 monothiol glutaredoxin, Grx4 family compare
Psest_2025 -1.5 -1.8 cold shock domain protein CspD compare
Psest_3806 -1.5 -7.5 Phosphomannomutase compare
Psest_0489 -1.5 -1.4 phosphoserine phosphatase SerB compare
Psest_1724 -1.4 -5.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0414 -1.4 -4.6 biotin biosynthesis protein BioC compare
Psest_0722 -1.4 -6.8 Predicted ATPase compare
Psest_2946 -1.4 -3.5 septum site-determining protein MinD compare
Psest_3777 -1.4 -3.8 diguanylate cyclase (GGDEF) domain compare
Psest_3927 -1.4 -4.9 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_3766 -1.4 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_4405 -1.4 -2.6 hypothetical protein compare
Psest_3301 -1.4 -3.5 Predicted transcriptional regulator, BolA superfamily compare
Psest_0334 -1.4 -3.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4005 -1.4 -4.9 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_3289 -1.4 -7.1 prepilin-type N-terminal cleavage/methylation domain compare
Psest_2988 -1.4 -5.5 aspartate kinase, monofunctional class compare
Psest_2719 -1.4 -2.1 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_3810 -1.4 -1.3 orotate phosphoribosyltransferase compare
Psest_2532 -1.4 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_2872 -1.3 -1.9 protein RecA compare
Psest_3212 -1.3 -4.8 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1260 -1.3 -6.7 type IV pilus biogenesis/stability protein PilW compare
Psest_1354 -1.3 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_0170 -1.3 -6.4 5,10-methenyltetrahydrofolate synthetase compare
Psest_0545 -1.3 -8.0 urease accessory protein UreG conserved
Psest_1241 -1.3 -7.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_0285 -1.3 -8.0 pilus retraction protein PilT compare
Psest_0547 -1.3 -4.3 Urease accessory protein UreF compare
Psest_3286 -1.3 -5.2 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_1509 -1.3 -7.1 quinolinate synthetase complex, A subunit compare
Psest_0300 -1.2 -7.0 Methyl-accepting chemotaxis protein compare
Psest_0024 -1.2 -7.9 LysM domain. compare
Psest_3716 -1.2 -8.0 Tfp pilus assembly protein PilP compare
Psest_2907 -1.2 -1.4 Protein of unknown function (DUF3618). compare
Psest_2358 -1.2 -1.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1804 -1.2 -2.1 Superfamily II DNA and RNA helicases compare
Psest_0705 -1.2 -8.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3719 -1.2 -8.4 type IV pilus assembly protein PilM compare
Psest_0138 -1.2 -6.8 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_0398 -1.1 -4.4 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_3715 -1.1 -9.2 type IV pilus secretin (or competence protein) PilQ compare
Psest_2901 -1.1 -1.9 hypothetical protein compare
Psest_0560 -1.1 -7.6 Urease (EC 3.5.1.5) (from data) conserved
Psest_0078 -1.1 -1.1 hypothetical protein compare
Psest_2527 -1.1 -5.5 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4083 -1.1 -8.6 Predicted permease compare
Psest_3322 -1.1 -9.3 TIGR02099 family protein compare
Psest_2810 -1.1 -3.3 5'/3'-nucleotidase SurE compare
Psest_3287 -1.1 -3.8 Type II secretory pathway, component PulF compare
Psest_1741 -1.1 -1.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0212 -1.1 -1.6 exodeoxyribonuclease V, gamma subunit compare
Psest_0557 -1.1 -6.5 Urease (EC 3.5.1.5) (from data) conserved
Psest_4044 -1.0 -3.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0137 -1.0 -5.9 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_1488 -1.0 -8.6 outer membrane porin, OprD family. compare
Psest_1814 -1.0 -6.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1242 -1.0 -1.6 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3375 -1.0 -5.3 prepilin-type N-terminal cleavage/methylation domain compare
Psest_3717 -1.0 -4.9 Tfp pilus assembly protein PilO compare
Psest_2945 -1.0 -0.9 septum site-determining protein MinC compare
Psest_2424 -1.0 -2.6 K+ transport systems, NAD-binding component compare
Psest_0718 -1.0 -3.9 nicotinate-nucleotide pyrophosphorylase compare
Psest_4363 -0.9 -5.0 ATPases involved in chromosome partitioning compare
Psest_1506 -0.9 -4.2 queuosine biosynthesis protein QueC compare
Psest_0548 -0.9 -4.9 Urease accessory protein UreE compare
Psest_2530 -0.9 -4.0 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3850 -0.9 -0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2923 -0.9 -1.6 hypothetical protein compare
Psest_0136 -0.9 -6.6 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_0191 -0.9 -1.1 PAS domain S-box compare
Psest_4010 -0.9 -1.4 peroxiredoxin, OsmC subfamily compare
Psest_2158 -0.9 -7.4 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_0561 -0.9 -5.3 Urease accessory protein UreH compare
Psest_2079 -0.9 -6.7 Predicted permeases compare
Psest_0958 -0.9 -5.0 Oligoketide cyclase/lipid transport protein compare
Psest_3399 -0.9 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_0706 -0.9 -4.6 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_0296 -0.9 -5.0 glutathione synthetase, prokaryotic compare
Psest_2953 -0.9 -1.7 Histone acetyltransferase compare
Psest_1884 -0.9 -1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3174 -0.8 -6.9 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_1527 -0.8 -5.9 Na+/proline symporter compare
Psest_3720 -0.8 -7.2 penicillin-binding protein, 1A family compare
Psest_1957 -0.8 -6.0 outer membrane porin, OprD family. compare
Psest_2023 -0.8 -2.1 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_4141 -0.8 -4.2 3-carboxymuconate cyclase compare
Psest_3554 -0.8 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0999 -0.8 -1.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0691 -0.8 -5.5 ribonuclease R compare
Psest_3496 -0.8 -1.7 Predicted metal-binding protein compare
Psest_1752 -0.8 -1.4 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_2316 -0.8 -5.8 phosphoenolpyruvate synthase compare
Psest_3339 -0.8 -3.2 Signal transduction histidine kinase compare
Psest_3180 -0.8 -4.9 Exonuclease I compare
Psest_1813 -0.8 -5.5 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2940 -0.8 -1.8 Predicted membrane protein compare
Psest_0175 -0.8 -4.0 Xaa-Pro aminopeptidase compare
Psest_2586 -0.8 -6.5 FimV N-terminal domain compare
Psest_1901 -0.8 -2.7 hypothetical protein compare
Psest_2531 -0.8 -5.6 cytochrome c oxidase accessory protein FixG compare
Psest_2331 -0.8 -5.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_0707 -0.8 -3.1 MYND finger. compare
Psest_0284 -0.8 -5.6 pyridoxal phosphate enzyme, YggS family compare
Psest_3904 -0.8 -1.6 hypothetical protein compare
Psest_0709 -0.8 -4.5 pseudouridine synthase, RluA family compare
Psest_1643 -0.7 -1.1 hypothetical protein compare
Psest_1293 -0.7 -1.4 VanZ like family. compare
Psest_3295 -0.7 -2.3 dinuclear metal center protein, YbgI/SA1388 family compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Urea in Pseudomonas stutzeri RCH2

For nitrogen source Urea across organisms