Experiment set13H29 for Pseudomonas stutzeri RCH2

Compare to:

Sodium nitrite nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Psest_1635 +2.4 21.9 Signal transduction histidine kinase compare
Psest_2260 +2.3 21.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0538 +2.2 21.1 Signal transduction histidine kinase compare
Psest_1840 +2.0 19.2 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_1725 +1.8 12.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3100 +1.8 8.3 RNA polymerase sigma factor RpoE compare
Psest_0558 +1.6 1.8 urease, beta subunit compare
Psest_0717 +1.6 13.7 Protein of unknown function (DUF1631). compare
Psest_0192 +1.5 7.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4273 +1.5 8.7 Lysophospholipase compare
Psest_3546 +1.5 1.9 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3937 +1.5 1.8 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3217 +1.5 14.3 PAS domain S-box compare
Psest_2066 +1.5 1.8 ABC-type uncharacterized transport system, permease component compare
Psest_2232 +1.4 12.3 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3216 +1.4 13.2 diguanylate cyclase (GGDEF) domain compare
Psest_2613 +1.4 1.4 hypothetical protein compare
Psest_2304 +1.4 1.5 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2383 +1.3 6.5 Predicted transcriptional regulators compare
Psest_3231 +1.3 1.4 hypothetical protein compare
Psest_3371 +1.2 8.1 type IV pilus modification protein PilV compare
Psest_1677 +1.2 1.2 Protein-tyrosine-phosphatase compare
Psest_4008 +1.2 9.2 PAS domain S-box compare
Psest_0417 +1.2 3.0 Acyl-CoA dehydrogenases compare
Psest_3372 +1.2 6.8 Tfp pilus assembly protein PilW compare
Psest_1643 +1.2 1.8 hypothetical protein compare
Psest_0310 +1.1 3.7 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_4403 +1.1 6.9 hypothetical protein compare
Psest_3745 +1.1 2.5 Uncharacterized enzyme of heme biosynthesis compare
Psest_0956 +1.1 6.4 Transcriptional regulators compare
Psest_1870 +1.1 0.7 Transcriptional regulators compare
Psest_3042 +1.1 0.9 Nitrate reductase cytochrome c-type subunit compare
Psest_2725 +1.0 1.8 hypothetical protein compare
Psest_1783 +1.0 2.1 Predicted transporter component compare
Psest_1923 +1.0 3.5 adhesin-associated BNR repeat protein (from data) compare
Psest_4382 +1.0 8.6 hypothetical protein compare
Psest_3069 +1.0 1.7 3-oxoadipate enol-lactonase compare
Psest_0357 +1.0 2.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0487 +1.0 3.4 Uncharacterized protein conserved in bacteria compare
Psest_0987 +1.0 2.5 Predicted periplasmic or secreted lipoprotein compare
Psest_0693 +1.0 8.8 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_1215 +1.0 1.4 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_0759 +1.0 1.4 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_1924 +1.0 8.2 adhesin-associated MmpL efflux pump (from data) compare
Psest_1122 +0.9 7.9 putative adhesin (DUF1302) (from data) compare
Psest_0993 +0.9 6.8 Glucose-6-phosphate isomerase compare
Psest_2025 +0.9 1.3 cold shock domain protein CspD compare
Psest_3974 +0.9 4.1 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_4082 +0.9 1.9 hypothetical protein compare
Psest_3047 +0.9 0.9 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0227 +0.9 1.7 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_0563 +0.9 2.2 urea ABC transporter, ATP-binding protein UrtE compare
Psest_2565 +0.9 1.6 Transcriptional regulator compare
Psest_3370 +0.9 4.8 prepilin-type N-terminal cleavage/methylation domain compare
Psest_0135 +0.9 5.2 Uncharacterized enzymes related to aldose 1-epimerase compare
Psest_1388 +0.9 1.4 Uncharacterized protein conserved in bacteria compare
Psest_2123 +0.9 1.2 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_1567 +0.9 3.2 Transcriptional regulator compare
Psest_2983 +0.9 2.7 hypothetical protein compare
Psest_3148 +0.9 1.1 hypothetical protein compare
Psest_0609 +0.9 0.7 hypothetical protein compare
Psest_1218 +0.8 1.6 Predicted endonuclease containing a URI domain compare
Psest_1935 +0.8 4.4 hypothetical protein compare
Psest_0857 +0.8 1.1 Membrane transporters of cations and cationic drugs compare
Psest_0446 +0.8 4.4 hypothetical protein compare
Psest_1625 +0.8 1.6 hypothetical protein compare
Psest_1516 +0.8 2.2 Uncharacterized lipoprotein compare
Psest_3922 +0.8 1.5 Response regulator of citrate/malate metabolism compare
Psest_0191 +0.8 1.1 PAS domain S-box compare
Psest_2712 +0.8 2.9 Surface lipoprotein compare
Psest_0275 +0.8 2.3 Protein of unknown function (DUF3392). compare
Psest_2561 +0.8 0.9 hypothetical protein compare
Psest_0311 +0.8 3.4 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_3048 +0.8 1.0 hypothetical protein compare
Psest_2887 +0.8 1.6 Uncharacterized protein conserved in bacteria compare
Psest_2730 +0.8 1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2308 +0.8 1.0 Predicted Fe-S protein compare
Psest_3626 +0.7 3.5 hypothetical protein compare
Psest_1303 +0.7 1.9 hypothetical protein compare
Psest_1325 +0.7 2.6 Molecular chaperone compare
Psest_2892 +0.7 0.9 Transcriptional regulator compare
Psest_0455 +0.7 3.6 ADP-heptose:LPS heptosyltransferase compare
Psest_3063 +0.7 3.0 hypothetical protein compare
Psest_0845 +0.7 0.6 hypothetical protein compare
Psest_3373 +0.7 3.7 Tfp pilus assembly protein PilX compare
Psest_2110 +0.7 1.5 hypothetical protein compare
Psest_3754 +0.7 1.9 Uncharacterized protein involved in response to NO compare
Psest_3816 +0.7 1.0 DNA-directed RNA polymerase, omega subunit compare
Psest_3437 +0.7 1.6 diguanylate cyclase (GGDEF) domain compare
Psest_0716 +0.7 1.0 Protein of unknown function (DUF3094). compare
Psest_0778 +0.7 1.2 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_0259 +0.7 0.9 cell division ATP-binding protein FtsE compare
Psest_0067 +0.7 1.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_4113 +0.7 3.8 hypothetical protein compare
Psest_4005 +0.7 2.2 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_0013 +0.7 3.4 Lauroyl/myristoyl acyltransferase compare
Psest_0113 +0.7 1.1 Uncharacterized protein conserved in bacteria compare
Psest_4128 +0.7 0.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0568 +0.7 1.4 pseudouridine synthase compare
Psest_2225 +0.7 1.3 Diacylglycerol kinase compare
Psest_3383 +0.7 1.7 Uncharacterized protein conserved in bacteria compare
Psest_4406 +0.7 1.1 hypothetical protein compare
Psest_3884 +0.7 0.8 Signal transduction histidine kinase compare
Psest_2980 +0.7 4.5 oxaloacetate decarboxylase alpha subunit compare
Psest_0332 +0.7 3.3 Membrane-bound lysozyme-inhibitor of c-type lysozyme. compare
Psest_3354 +0.7 2.1 1-phosphofructokinase (EC 2.7.1.56) (from data) compare
Psest_1556 +0.7 1.8 hypothetical protein compare
Psest_3718 +0.7 2.8 Tfp pilus assembly protein PilN compare
Psest_2956 +0.7 1.6 Uncharacterized conserved protein compare
Psest_0078 +0.6 0.7 hypothetical protein compare
Psest_1721 +0.6 1.1 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2083 +0.6 2.4 Putative sterol carrier protein compare
Psest_2551 +0.6 4.2 1-aminocyclopropane-1-carboxylate deaminase compare
Psest_1986 +0.6 0.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_0309 +0.6 0.9 RND family efflux transporter, MFP subunit compare
Psest_1660 +0.6 1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2975 +0.6 1.7 tRNA_Arg_CCT compare
Psest_3045 +0.6 1.2 Cold shock proteins compare
Psest_2173 +0.6 1.7 competence/damage-inducible protein CinA C-terminal domain compare
Psest_3374 +0.6 4.2 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_2520 +0.6 0.7 Predicted SAM-dependent methyltransferase compare
Psest_0260 +0.6 0.7 Cell division protein compare
Psest_2964 +0.6 1.9 flagellar basal-body rod protein FlgF compare
Psest_0869 +0.6 0.8 Acetyltransferase (isoleucine patch superfamily) compare
Psest_2485 +0.6 2.0 hypothetical protein compare
Psest_2899 +0.6 0.7 hypothetical protein compare
Psest_3222 +0.6 1.6 Putative threonine efflux protein compare
Psest_1644 +0.6 2.5 Erythromycin esterase homolog compare
Psest_1195 +0.6 1.5 xanthine permease compare
Psest_4140 +0.6 3.4 Acyl-CoA dehydrogenases compare
Psest_2538 +0.6 1.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2252 +0.6 2.6 Predicted permeases compare
Psest_3189 +0.6 2.0 hypothetical protein compare
Psest_2365 +0.6 1.2 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_1532 +0.6 1.2 DNA recombination-dependent growth factor C compare
Psest_2896 +0.6 1.9 hypothetical protein compare
Psest_2586 +0.6 4.7 FimV N-terminal domain compare
Psest_2773 +0.6 2.9 glycerol kinase compare
Psest_0086 +0.6 1.2 hypothetical protein compare
Psest_2775 +0.6 1.7 Glycerol-3-phosphate dehydrogenase compare
Psest_1017 +0.6 2.8 Protein of unknown function (DUF3426). compare
Psest_4139 +0.6 3.8 PAS domain S-box compare
Psest_0298 +0.6 2.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1205 +0.6 2.3 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_1994 +0.6 1.8 Amidases related to nicotinamidase compare
Psest_3736 +0.6 1.4 Uncharacterized protein conserved in bacteria compare
Psest_1964 +0.6 2.3 hypothetical protein compare
Psest_3296 +0.6 1.1 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_3502 +0.6 0.9 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_1775 +0.6 2.0 Predicted ATPase (AAA+ superfamily) compare
Psest_2154 +0.6 2.1 formate dehydrogenase accessory protein FdhE compare
Psest_3367 +0.6 0.8 translation initation factor SUI1, putative, prokaryotic compare
Psest_0790 +0.6 1.4 Uncharacterized protein conserved in bacteria compare
Psest_2850 +0.5 0.8 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1598 +0.5 1.2 heavy metal response regulator compare
Psest_0556 +0.5 2.6 Curlin associated repeat. compare
Psest_1745 +0.5 1.9 Flagellar motor component compare
Psest_3824 +0.5 1.5 Predicted membrane protein compare
Psest_2218 +0.5 0.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_1737 +0.5 1.6 flagellar biosynthesis protein FlhA compare
Psest_4243 +0.5 0.4 type VI secretion lipoprotein, VC_A0113 family compare
Psest_3215 +0.5 1.4 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_2605 +0.5 1.1 transcriptional activator RfaH compare
Psest_0592 +0.5 1.2 hypothetical protein compare
Psest_3438 +0.5 2.6 Glutamate dehydrogenase/leucine dehydrogenase compare
Psest_2229 +0.5 0.9 Uncharacterized protein conserved in bacteria compare
Psest_4079 +0.5 1.7 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_2576 +0.5 2.3 hypothetical protein compare
Psest_3697 +0.5 0.8 Outer membrane lipoprotein carrier protein LolA. compare
Psest_1722 +0.5 2.9 flagellar protein export ATPase FliI compare
Psest_1733 +0.5 1.1 flagellar biosynthetic protein FliQ compare
Psest_3890 +0.5 0.9 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2470 +0.5 1.1 hypothetical protein compare
Psest_2506 +0.5 1.9 Uncharacterized flagellar protein FlaG compare
Psest_0765 +0.5 1.7 hypothetical protein compare
Psest_1179 +0.5 0.7 2-hydroxy-3-oxopropionate reductase compare
Psest_3803 +0.5 0.8 DNA repair protein radc compare
Psest_3494 +0.5 1.1 hypothetical protein compare
Psest_1512 +0.5 2.5 Predicted permease compare
Psest_1732 +0.5 1.3 flagellar biosynthetic protein FliP compare
Psest_2569 +0.5 2.0 Transcriptional regulator compare
Psest_1052 +0.5 1.7 Uncharacterized protein involved in chromosome partitioning compare
Psest_0758 +0.5 2.9 Lactoylglutathione lyase and related lyases compare
Psest_3050 +0.5 1.1 tRNA_Gly_CCC compare
Psest_0831 +0.5 0.6 hypothetical protein compare
Psest_2772 +0.5 1.8 MIP family channel proteins compare
Psest_2945 +0.5 0.4 septum site-determining protein MinC compare
Psest_4292 +0.5 1.7 Predicted enzyme related to lactoylglutathione lyase compare
Psest_1731 +0.5 0.9 flagellar biosynthetic protein FliO compare
Psest_0582 +0.5 1.9 hypothetical protein compare
Psest_1796 +0.5 1.4 Predicted NAD/FAD-dependent oxidoreductase compare
Psest_2462 +0.5 2.9 selenium donor protein compare
Psest_1601 +0.5 1.0 Signal transduction histidine kinase compare
Psest_2681 +0.5 1.5 Uncharacterized protein conserved in bacteria compare
Psest_4090 +0.5 0.8 diaminobutyrate acetyltransferase compare
Psest_1392 +0.5 1.0 ABC-type uncharacterized transport systems, ATPase components compare
Psest_1651 +0.5 1.7 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_1307 +0.5 1.6 Dienelactone hydrolase and related enzymes compare
Psest_1282 +0.5 0.7 Amidases related to nicotinamidase compare
Psest_3536 +0.5 0.5 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source Sodium nitrite in Pseudomonas stutzeri RCH2

For nitrogen source Sodium nitrite across organisms