Experiment set13H28 for Pseudomonas stutzeri RCH2

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3317 -7.5 -5.2 Phosphotransferase System HPr (HPr) Family compare
Psest_3647 -6.9 -4.8 Indole-3-glycerol phosphate synthase compare
Psest_0279 -6.5 -6.3 methionine biosynthesis protein MetW compare
Psest_3864 -6.1 -13.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3650 -6.1 -14.2 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3862 -6.0 -15.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0508 -5.9 -10.6 gamma-glutamyl phosphate reductase compare
Psest_0954 -5.8 -8.9 Fe-S oxidoreductase compare
Psest_3648 -5.8 -8.8 anthranilate phosphoribosyltransferase compare
Psest_2578 -5.8 -14.4 O-succinylhomoserine sulfhydrylase compare
Psest_3710 -5.7 -18.0 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3649 -5.7 -10.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3711 -5.7 -20.6 Glutamate synthase domain 2 compare
Psest_0153 -5.6 -13.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2584 -5.6 -5.4 Phosphoribosylanthranilate isomerase compare
Psest_3866 -5.6 -20.3 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0326 -5.5 -19.8 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3479 -5.5 -8.6 molybdenum cofactor synthesis domain compare
Psest_0063 -5.4 -12.6 tryptophan synthase, beta subunit compare
Psest_0952 -5.4 -3.7 Uncharacterized conserved protein compare
Psest_0953 -5.4 -13.5 iron-sulfur cluster-binding protein compare
Psest_3298 -5.3 -12.9 histidinol dehydrogenase compare
Psest_3480 -5.3 -4.2 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_0325 -5.3 -15.2 Putative threonine efflux protein compare
Psest_0280 -5.2 -16.2 homoserine O-acetyltransferase compare
Psest_2845 -5.2 -12.6 [Protein-PII] uridylyltransferase compare
Psest_2650 -5.2 -4.6 hypothetical protein compare
Psest_3299 -5.2 -15.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0155 -5.1 -7.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2591 -5.1 -4.9 3-isopropylmalate dehydratase, large subunit compare
Psest_0062 -5.0 -15.7 tryptophan synthase, alpha subunit compare
Psest_3168 -4.9 -4.2 Molybdopterin converting factor, large subunit compare
Psest_0313 -4.8 -6.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3818 -4.7 -10.0 endoribonuclease L-PSP, putative compare
Psest_3384 -4.6 -11.0 glutamate 5-kinase compare
Psest_3931 -4.5 -6.0 Signal transduction histidine kinase, nitrogen specific compare
Psest_3943 -4.5 -7.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1295 -4.4 -6.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4084 -4.4 -20.8 oxaloacetate decarboxylase alpha subunit compare
Psest_3944 -4.4 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2589 -4.4 -13.5 3-isopropylmalate dehydrogenase compare
Psest_1640 -4.3 -14.6 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_1037 -4.3 -4.1 acetolactate synthase, small subunit compare
Psest_0152 -4.2 -4.2 Imidazoleglycerol-phosphate dehydratase compare
Psest_4085 -4.2 -20.9 Biotin carboxylase compare
Psest_1926 -4.2 -17.7 Uncharacterized anaerobic dehydrogenase conserved
Psest_2088 -3.9 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_1772 -3.8 -6.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0687 -3.7 -11.1 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3932 -3.7 -5.3 nitrogen regulation protein NR(I) compare
Psest_3170 -3.7 -9.4 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1961 -3.6 -12.9 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_1115 -3.6 -4.3 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0327 -3.6 -7.9 Transcriptional regulator compare
Psest_2579 -3.6 -3.5 amidophosphoribosyltransferase compare
Psest_3960 -3.5 -2.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2590 -3.5 -1.8 3-isopropylmalate dehydratase, small subunit compare
Psest_3998 -3.3 -10.7 glutamate--cysteine ligase compare
Psest_3297 -3.3 -11.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_4086 -3.2 -12.6 Transcriptional regulator compare
Psest_1012 -3.2 -5.9 Signal transduction histidine kinase compare
Psest_2329 -3.0 -17.0 Transcriptional regulator compare
Psest_3226 -2.7 -1.6 Predicted membrane protein compare
Psest_2511 -2.7 -7.7 molybdenum cofactor biosynthesis protein A, bacterial conserved
Psest_1496 -2.6 -1.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_3129 -2.6 -1.9 tyrosine recombinase XerD compare
Psest_0999 -2.5 -4.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1473 -2.5 -8.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2104 -2.5 -2.3 IscR-regulated protein YhgI compare
Psest_3351 -2.4 -8.6 peptide chain release factor 3 compare
Psest_0955 -2.4 -5.3 D,L-lactate:H+ symporter (from data) compare
Psest_0951 -2.3 -10.6 FAD/FMN-containing dehydrogenases compare
Psest_1474 -2.2 -1.5 phosphoribosylaminoimidazole synthetase compare
Psest_3159 -2.2 -6.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0415 -2.2 -5.8 dethiobiotin synthase compare
Psest_2527 -2.2 -8.6 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0411 -2.1 -11.0 biotin synthetase compare
Psest_0722 -2.1 -9.6 Predicted ATPase compare
Psest_0442 -2.0 -3.3 ATPases of the AAA+ class compare
Psest_1013 -2.0 -2.7 phosphoribosylamine--glycine ligase compare
Psest_1928 -2.0 -5.3 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
Psest_2532 -1.9 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_2037 -1.9 -2.4 uroporphyrin-III C-methyltransferase compare
Psest_2324 -1.9 -12.9 hypothetical protein compare
Psest_1936 -1.9 -10.1 Response regulator with putative antiterminator output domain conserved
Psest_2333 -1.9 -1.4 Protein of unknown function (DUF3359). compare
Psest_1511 -1.9 -2.8 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0719 -1.9 -8.0 Uncharacterized protein conserved in bacteria compare
Psest_0175 -1.9 -7.5 Xaa-Pro aminopeptidase compare
Psest_2325 -1.8 -9.6 alpha-L-glutamate ligase-related protein compare
Psest_2530 -1.8 -5.3 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1417 -1.7 -1.9 hypothetical protein compare
Psest_0334 -1.7 -3.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2316 -1.7 -11.6 phosphoenolpyruvate synthase compare
Psest_0412 -1.7 -8.9 8-amino-7-oxononanoate synthase compare
Psest_2988 -1.7 -5.2 aspartate kinase, monofunctional class compare
Psest_2090 -1.7 -3.2 Protein of unknown function (DUF2970). compare
Psest_1686 -1.6 -6.5 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3927 -1.6 -4.3 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_3338 -1.6 -2.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3790 -1.6 -9.1 Cytochrome c5 compare
Psest_2864 -1.6 -4.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0306 -1.6 -11.8 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0212 -1.6 -2.7 exodeoxyribonuclease V, gamma subunit compare
Psest_1292 -1.6 -6.5 monothiol glutaredoxin, Grx4 family compare
Psest_0503 -1.6 -2.7 Acyl dehydratase compare
Psest_4201 -1.6 -2.6 general secretion pathway protein F compare
Psest_1505 -1.5 -2.3 Organic radical activating enzymes compare
Psest_2946 -1.5 -3.5 septum site-determining protein MinD compare
Psest_3573 -1.5 -4.6 dTDP-4-dehydrorhamnose reductase compare
Psest_3767 -1.5 -4.9 tyrosine recombinase XerC compare
Psest_4191 -1.5 -3.4 Transcriptional regulator compare
Psest_3777 -1.5 -3.4 diguanylate cyclase (GGDEF) domain compare
Psest_1527 -1.5 -9.3 Na+/proline symporter compare
Psest_1008 -1.5 -1.3 hypothetical protein compare
Psest_2278 -1.5 -2.6 coenzyme PQQ biosynthesis protein PqqD compare
Psest_3377 -1.5 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2323 -1.5 -8.3 Uncharacterized protein conserved in archaea compare
Psest_0398 -1.4 -5.7 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_0170 -1.4 -4.1 5,10-methenyltetrahydrofolate synthetase compare
Psest_3721 -1.4 -6.1 Malic enzyme compare
Psest_3809 -1.4 -4.6 hypothetical protein compare
Psest_1238 -1.4 -6.7 Predicted membrane protein/domain compare
Psest_2848 -1.4 -3.7 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1509 -1.4 -6.3 quinolinate synthetase complex, A subunit compare
Psest_2719 -1.4 -1.6 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0489 -1.3 -1.2 phosphoserine phosphatase SerB compare
Psest_4219 -1.3 -2.4 DNA polymerase I compare
Psest_2714 -1.2 -2.1 7-cyano-7-deazaguanine reductase compare
Psest_2850 -1.2 -1.5 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0413 -1.2 -3.7 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2810 -1.2 -4.1 5'/3'-nucleotidase SurE compare
Psest_4142 -1.2 -1.8 hypothetical protein compare
Psest_1167 -1.2 -1.3 hypothetical protein compare
Psest_0958 -1.2 -6.0 Oligoketide cyclase/lipid transport protein compare
Psest_1679 -1.2 -1.8 ribonuclease, Rne/Rng family compare
Psest_2331 -1.2 -6.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_1814 -1.2 -8.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0691 -1.2 -7.9 ribonuclease R compare
Psest_1925 -1.1 -5.6 uroporphyrin-III C-methyltransferase conserved
Psest_1812 -1.1 -6.4 pseudaminic acid CMP-transferase compare
Psest_1506 -1.1 -3.8 queuosine biosynthesis protein QueC compare
Psest_0164 -1.1 -0.7 Glutaredoxin, GrxC family compare
Psest_3843 -1.1 -5.9 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3735 -1.1 -2.0 uncharacterized domain 1 compare
Psest_3092 -1.1 -1.7 ribonuclease III, bacterial compare
Psest_2531 -1.1 -7.5 cytochrome c oxidase accessory protein FixG compare
Psest_1242 -1.1 -1.7 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2605 -1.1 -2.8 transcriptional activator RfaH compare
Psest_2539 -1.1 -3.0 adenine phosphoribosyltransferase compare
Psest_3178 -1.1 -2.8 formyltetrahydrofolate deformylase compare
Psest_2406 -1.1 -6.5 nitrite reductase [NAD(P)H], large subunit conserved
Psest_1886 -1.1 -4.2 Uncharacterized protein conserved in bacteria compare
Psest_2645 -1.1 -4.3 Transcriptional regulator compare
Psest_3339 -1.1 -4.4 Signal transduction histidine kinase compare
Psest_4044 -1.1 -2.9 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3810 -1.1 -1.2 orotate phosphoribosyltransferase compare
Psest_1813 -1.1 -6.4 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_4098 -1.1 -3.2 Superfamily I DNA and RNA helicases compare
Psest_2446 -1.0 -1.8 acetyl-CoA acetyltransferases compare
Psest_2809 -1.0 -2.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3670 -1.0 -7.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_0673 -1.0 -3.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_0708 -1.0 -1.5 outer membrane assembly lipoprotein YfiO compare
Psest_1815 -1.0 -7.3 pseudaminic acid synthase compare
Psest_3123 -1.0 -1.1 dihydroorotase, homodimeric type compare
Psest_1518 -1.0 -2.4 tRNA_Ser_CGA compare
Psest_1920 -1.0 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_1241 -1.0 -4.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_0297 -1.0 -3.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2851 -1.0 -7.2 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit compare
Psest_3295 -0.9 -2.5 dinuclear metal center protein, YbgI/SA1388 family compare
Psest_2079 -0.9 -6.5 Predicted permeases compare
Psest_2945 -0.9 -0.7 septum site-determining protein MinC compare
Psest_2768 -0.9 -2.3 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_1951 -0.9 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_1139 -0.9 -2.5 PAS domain S-box compare
Psest_2158 -0.9 -6.8 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_1704 -0.9 -1.2 Dehydrogenases (flavoproteins) compare
Psest_0998 -0.9 -2.2 poly(A) polymerase compare
Psest_1293 -0.9 -1.7 VanZ like family. compare
Psest_2293 -0.9 -1.1 hypothetical protein compare
Psest_0414 -0.9 -2.6 biotin biosynthesis protein BioC compare
Psest_1026 -0.9 -2.2 Uncharacterized iron-regulated protein compare
Psest_4083 -0.9 -6.1 Predicted permease compare
Psest_0440 -0.9 -2.0 hypothetical protein compare
Psest_0520 -0.9 -0.8 hypothetical protein compare
Psest_1724 -0.9 -2.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1227 -0.9 -2.7 Predicted SAM-dependent methyltransferase compare
Psest_0154 -0.9 -2.6 Uncharacterized conserved protein compare
Psest_4151 -0.8 -2.0 Flagellar hook capping protein compare
Psest_1937 -0.8 -3.2 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_0718 -0.8 -2.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_0393 -0.8 -3.9 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2849 -0.8 -4.3 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit compare
Psest_3322 -0.8 -7.1 TIGR02099 family protein compare
Psest_0515 -0.8 -2.2 rare lipoprotein A compare
Psest_3185 -0.8 -1.5 MoxR-like ATPases compare
Psest_3803 -0.8 -0.9 DNA repair protein radc compare
Psest_3766 -0.8 -1.2 Uncharacterized protein conserved in bacteria compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas stutzeri RCH2

For nitrogen source Sodium nitrate across organisms