Experiment set13H27 for Pseudomonas stutzeri RCH2

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3317 -7.7 -5.3 Phosphotransferase System HPr (HPr) Family compare
Psest_3648 -6.7 -6.5 anthranilate phosphoribosyltransferase compare
Psest_0153 -6.4 -12.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0279 -6.3 -7.5 methionine biosynthesis protein MetW compare
Psest_3711 -6.1 -17.7 Glutamate synthase domain 2 compare
Psest_3862 -6.1 -15.9 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3649 -6.1 -8.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3650 -6.0 -16.5 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0155 -5.9 -7.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2591 -5.9 -4.0 3-isopropylmalate dehydratase, large subunit compare
Psest_3168 -5.8 -3.1 Molybdopterin converting factor, large subunit compare
Psest_3944 -5.8 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3647 -5.8 -9.6 Indole-3-glycerol phosphate synthase compare
Psest_3710 -5.7 -18.8 glutamate synthase small subunit family protein, proteobacterial compare
Psest_2590 -5.6 -1.6 3-isopropylmalate dehydratase, small subunit compare
Psest_0953 -5.6 -14.5 iron-sulfur cluster-binding protein compare
Psest_0063 -5.5 -12.9 tryptophan synthase, beta subunit compare
Psest_0952 -5.5 -3.8 Uncharacterized conserved protein compare
Psest_0062 -5.5 -16.1 tryptophan synthase, alpha subunit compare
Psest_3864 -5.4 -18.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0508 -5.4 -12.1 gamma-glutamyl phosphate reductase compare
Psest_2845 -5.2 -12.6 [Protein-PII] uridylyltransferase compare
Psest_3932 -5.2 -7.1 nitrogen regulation protein NR(I) compare
Psest_3384 -5.1 -11.9 glutamate 5-kinase compare
Psest_0313 -5.1 -6.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0326 -5.1 -18.3 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2584 -4.9 -8.7 Phosphoribosylanthranilate isomerase compare
Psest_1640 -4.9 -18.1 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3866 -4.9 -21.4 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3931 -4.9 -6.6 Signal transduction histidine kinase, nitrogen specific compare
Psest_0280 -4.8 -18.0 homoserine O-acetyltransferase compare
Psest_3818 -4.8 -11.5 endoribonuclease L-PSP, putative compare
Psest_2578 -4.8 -17.7 O-succinylhomoserine sulfhydrylase compare
Psest_3299 -4.8 -17.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_1115 -4.7 -3.4 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1037 -4.7 -3.1 acetolactate synthase, small subunit compare
Psest_3298 -4.6 -13.8 histidinol dehydrogenase compare
Psest_0325 -4.5 -16.7 Putative threonine efflux protein compare
Psest_1496 -4.5 -2.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_0954 -4.4 -9.3 Fe-S oxidoreductase compare
Psest_2650 -4.2 -4.0 hypothetical protein compare
Psest_4084 -4.2 -21.1 oxaloacetate decarboxylase alpha subunit compare
Psest_3998 -4.2 -10.1 glutamate--cysteine ligase compare
Psest_1926 -4.2 -15.2 Uncharacterized anaerobic dehydrogenase conserved
Psest_1295 -4.2 -8.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4085 -4.1 -18.6 Biotin carboxylase compare
Psest_0152 -4.1 -6.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_2589 -4.0 -11.4 3-isopropylmalate dehydrogenase compare
Psest_3943 -4.0 -6.0 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1961 -3.8 -14.9 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3170 -3.8 -8.2 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0327 -3.8 -8.9 Transcriptional regulator compare
Psest_0687 -3.7 -10.4 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3479 -3.7 -7.2 molybdenum cofactor synthesis domain compare
Psest_3480 -3.6 -3.0 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1772 -3.5 -6.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2088 -3.3 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_0498 -3.3 -2.2 ribosome small subunit-dependent GTPase A compare
Psest_1473 -3.3 -7.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2329 -3.2 -18.8 Transcriptional regulator compare
Psest_3297 -3.2 -11.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_4086 -3.2 -13.3 Transcriptional regulator compare
Psest_2579 -3.1 -5.5 amidophosphoribosyltransferase compare
Psest_2511 -3.1 -7.9 molybdenum cofactor biosynthesis protein A, bacterial conserved
Psest_0951 -2.9 -13.3 FAD/FMN-containing dehydrogenases compare
Psest_3226 -2.7 -1.6 Predicted membrane protein compare
Psest_1012 -2.6 -6.2 Signal transduction histidine kinase compare
Psest_1928 -2.5 -7.5 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
Psest_0955 -2.5 -7.0 D,L-lactate:H+ symporter (from data) compare
Psest_0722 -2.5 -9.7 Predicted ATPase compare
Psest_2104 -2.4 -2.7 IscR-regulated protein YhgI compare
Psest_1292 -2.3 -11.3 monothiol glutaredoxin, Grx4 family compare
Psest_3351 -2.3 -8.7 peptide chain release factor 3 compare
Psest_0411 -2.3 -11.3 biotin synthetase compare
Psest_3960 -2.2 -2.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1013 -2.2 -2.6 phosphoribosylamine--glycine ligase compare
Psest_2037 -2.2 -2.9 uroporphyrin-III C-methyltransferase compare
Psest_0193 -2.2 -1.5 conserved hypothetical protein compare
Psest_1474 -2.2 -2.6 phosphoribosylaminoimidazole synthetase compare
Psest_2532 -2.2 -4.5 Uncharacterized protein conserved in bacteria compare
Psest_4406 -2.1 -2.2 hypothetical protein compare
Psest_2714 -2.0 -3.1 7-cyano-7-deazaguanine reductase compare
Psest_1936 -2.0 -11.3 Response regulator with putative antiterminator output domain conserved
Psest_3159 -2.0 -7.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2527 -2.0 -8.8 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3927 -1.9 -5.7 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_3178 -1.8 -3.8 formyltetrahydrofolate deformylase compare
Psest_0170 -1.8 -6.9 5,10-methenyltetrahydrofolate synthetase compare
Psest_0398 -1.8 -7.3 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_0958 -1.8 -8.3 Oligoketide cyclase/lipid transport protein compare
Psest_1527 -1.7 -11.9 Na+/proline symporter compare
Psest_0306 -1.7 -11.8 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0297 -1.7 -5.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2864 -1.7 -4.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3721 -1.7 -9.0 Malic enzyme compare
Psest_2530 -1.7 -5.0 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_0442 -1.7 -3.1 ATPases of the AAA+ class compare
Psest_2316 -1.7 -11.1 phosphoenolpyruvate synthase compare
Psest_0412 -1.7 -9.8 8-amino-7-oxononanoate synthase compare
Psest_1679 -1.7 -2.4 ribonuclease, Rne/Rng family compare
Psest_0175 -1.6 -6.6 Xaa-Pro aminopeptidase compare
Psest_2324 -1.6 -10.7 hypothetical protein compare
Psest_2988 -1.6 -4.8 aspartate kinase, monofunctional class compare
Psest_2809 -1.6 -2.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2325 -1.6 -7.1 alpha-L-glutamate ligase-related protein compare
Psest_3092 -1.6 -2.1 ribonuclease III, bacterial compare
Psest_1925 -1.6 -8.9 uroporphyrin-III C-methyltransferase conserved
Psest_2946 -1.5 -3.4 septum site-determining protein MinD compare
Psest_1540 -1.5 -2.1 biotin-dependent carboxylase uncharacterized domain compare
Psest_0489 -1.5 -1.0 phosphoserine phosphatase SerB compare
Psest_3790 -1.5 -8.1 Cytochrome c5 compare
Psest_2323 -1.4 -8.6 Uncharacterized protein conserved in archaea compare
Psest_1238 -1.4 -7.0 Predicted membrane protein/domain compare
Psest_4298 -1.4 -1.2 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0719 -1.4 -6.7 Uncharacterized protein conserved in bacteria compare
Psest_1511 -1.4 -2.3 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3810 -1.4 -0.9 orotate phosphoribosyltransferase compare
Psest_1509 -1.4 -6.5 quinolinate synthetase complex, A subunit compare
Psest_2718 -1.4 -1.4 hypothetical protein compare
Psest_3377 -1.3 -1.1 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0212 -1.3 -2.2 exodeoxyribonuclease V, gamma subunit compare
Psest_2531 -1.3 -8.6 cytochrome c oxidase accessory protein FixG compare
Psest_3850 -1.3 -0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2719 -1.3 -1.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1242 -1.2 -1.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1814 -1.2 -8.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4044 -1.2 -3.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1505 -1.2 -2.1 Organic radical activating enzymes compare
Psest_0414 -1.2 -4.1 biotin biosynthesis protein BioC compare
Psest_2331 -1.2 -8.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_2000 -1.2 -3.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3843 -1.2 -5.9 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1506 -1.2 -5.1 queuosine biosynthesis protein QueC compare
Psest_4191 -1.2 -2.8 Transcriptional regulator compare
Psest_1812 -1.2 -5.8 pseudaminic acid CMP-transferase compare
Psest_1937 -1.2 -4.8 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_2561 -1.1 -1.1 hypothetical protein compare
Psest_4287 -1.1 -6.2 Predicted glutamine amidotransferases compare
Psest_1920 -1.1 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_2810 -1.1 -3.6 5'/3'-nucleotidase SurE compare
Psest_2018 -1.1 -2.2 Uncharacterized conserved protein compare
Psest_3047 -1.1 -1.2 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0218 -1.1 -2.9 Acyl-CoA hydrolase compare
Psest_1815 -1.1 -7.9 pseudaminic acid synthase compare
Psest_3338 -1.1 -1.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2680 -1.1 -5.6 transcriptional regulator, BolA protein family compare
Psest_0028 -1.1 -3.3 Coproporphyrinogen III oxidase compare
Psest_3777 -1.1 -3.3 diguanylate cyclase (GGDEF) domain compare
Psest_1813 -1.0 -6.4 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3670 -1.0 -6.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_3988 -1.0 -6.5 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_1631 -1.0 -1.2 Uncharacterized conserved small protein compare
Psest_2027 -1.0 -6.8 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_1417 -1.0 -1.3 hypothetical protein compare
Psest_2333 -1.0 -1.0 Protein of unknown function (DUF3359). compare
Psest_2645 -1.0 -5.3 Transcriptional regulator compare
Psest_3767 -1.0 -2.7 tyrosine recombinase XerC compare
Psest_0413 -1.0 -3.8 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3766 -1.0 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2015 -1.0 -2.9 Type II secretory pathway, component PulD compare
Psest_2851 -1.0 -7.3 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit compare
Psest_1241 -1.0 -4.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_1518 -1.0 -2.3 tRNA_Ser_CGA compare
Psest_0309 -1.0 -1.1 RND family efflux transporter, MFP subunit compare
Psest_1686 -1.0 -3.0 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0691 -0.9 -6.4 ribonuclease R compare
Psest_2158 -0.9 -7.2 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_0145 -0.9 -3.1 A/G-specific adenine glycosylase compare
Psest_3573 -0.9 -2.6 dTDP-4-dehydrorhamnose reductase compare
Psest_2079 -0.9 -6.3 Predicted permeases compare
Psest_2090 -0.9 -1.9 Protein of unknown function (DUF2970). compare
Psest_2637 -0.9 -1.3 putative methyltransferase, YaeB/AF_0241 family compare
Psest_0097 -0.9 -1.8 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3316 -0.9 -4.5 Predicted P-loop-containing kinase compare
Psest_4177 -0.9 -1.6 flagellar biosynthetic protein FliP compare
Psest_3339 -0.9 -3.0 Signal transduction histidine kinase compare
Psest_3803 -0.9 -0.9 DNA repair protein radc compare
Psest_2849 -0.9 -4.2 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit compare
Psest_0415 -0.9 -2.3 dethiobiotin synthase compare
Psest_4070 -0.9 -6.2 PAS domain S-box compare
Psest_3762 -0.9 -3.6 iron donor protein CyaY compare
Psest_3174 -0.9 -6.7 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_0692 -0.9 -2.0 rRNA methylase, putative, group 3 compare
Psest_1824 -0.8 -2.8 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3247 -0.8 -1.5 Uncharacterized membrane protein compare
Psest_1075 -0.8 -3.6 Predicted transcriptional regulators compare
Psest_3322 -0.8 -7.1 TIGR02099 family protein compare
Psest_2023 -0.8 -2.5 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3860 -0.8 -2.3 Predicted permeases compare
Psest_0999 -0.8 -2.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2407 -0.8 -2.0 nitrite reductase [NAD(P)H], small subunit compare
Psest_0771 -0.8 -5.2 Acyl-CoA hydrolase compare
Psest_1886 -0.8 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_2847 -0.8 -1.9 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_2612 -0.8 -3.0 hypothetical protein compare
Psest_3809 -0.8 -2.5 hypothetical protein compare
Psest_3993 -0.8 -5.0 alpha-L-glutamate ligases, RimK family compare
Psest_4370 -0.8 -1.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0959 -0.8 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_4345 -0.8 -4.3 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas stutzeri RCH2

For nitrogen source Sodium nitrate across organisms