Experiment set13H27 for Pseudomonas stutzeri RCH2

Compare to:

Sodium nitrate nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Psest_1635 +1.7 15.8 Signal transduction histidine kinase compare
Psest_0538 +1.6 16.1 Signal transduction histidine kinase compare
Psest_2260 +1.6 14.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0417 +1.5 6.1 Acyl-CoA dehydrogenases compare
Psest_1840 +1.5 14.4 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_3031 +1.4 1.5 hypothetical protein compare
Psest_1725 +1.3 10.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1660 +1.3 3.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_4273 +1.3 8.3 Lysophospholipase compare
Psest_2232 +1.2 10.4 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2304 +1.2 1.7 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0993 +1.2 9.2 Glucose-6-phosphate isomerase compare
Psest_1974 +1.1 3.2 integration host factor, alpha subunit compare
Psest_2122 +1.1 1.6 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0558 +1.1 1.4 urease, beta subunit compare
Psest_3371 +1.0 7.1 type IV pilus modification protein PilV compare
Psest_0956 +1.0 6.8 Transcriptional regulators compare
Psest_2899 +1.0 2.2 hypothetical protein compare
Psest_0717 +1.0 8.3 Protein of unknown function (DUF1631). compare
Psest_1122 +1.0 8.5 putative adhesin (DUF1302) (from data) compare
Psest_3217 +1.0 9.4 PAS domain S-box compare
Psest_1924 +1.0 8.4 adhesin-associated MmpL efflux pump (from data) compare
Psest_1663 +1.0 2.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_1656 +1.0 2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2957 +0.9 3.5 competence protein ComEA helix-hairpin-helix repeat region compare
Psest_1877 +0.9 1.5 AraC-type DNA-binding domain-containing proteins compare
Psest_2293 +0.9 1.7 hypothetical protein compare
Psest_3216 +0.9 8.8 diguanylate cyclase (GGDEF) domain compare
Psest_2775 +0.9 3.6 Glycerol-3-phosphate dehydrogenase compare
Psest_0192 +0.9 5.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2066 +0.9 1.3 ABC-type uncharacterized transport system, permease component compare
Psest_0693 +0.9 8.6 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_2613 +0.9 1.3 hypothetical protein compare
Psest_1625 +0.9 3.4 hypothetical protein compare
Psest_0487 +0.9 3.1 Uncharacterized protein conserved in bacteria compare
Psest_2383 +0.9 4.8 Predicted transcriptional regulators compare
Psest_3372 +0.9 6.5 Tfp pilus assembly protein PilW compare
Psest_3100 +0.9 4.1 RNA polymerase sigma factor RpoE compare
Psest_2918 +0.8 2.8 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) compare
Psest_0299 +0.8 2.5 Chemotaxis signal transduction protein compare
Psest_4082 +0.8 2.6 hypothetical protein compare
Psest_3373 +0.8 4.4 Tfp pilus assembly protein PilX compare
Psest_4201 +0.8 2.1 general secretion pathway protein F compare
Psest_1721 +0.8 1.6 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1532 +0.8 2.5 DNA recombination-dependent growth factor C compare
Psest_4008 +0.8 6.3 PAS domain S-box compare
Psest_4183 +0.8 2.1 PilZ domain. compare
Psest_2758 +0.8 1.4 Predicted transcriptional regulators compare
Psest_3231 +0.8 2.0 hypothetical protein compare
Psest_0259 +0.8 1.0 cell division ATP-binding protein FtsE compare
Psest_1567 +0.8 2.5 Transcriptional regulator compare
Psest_0389 +0.8 2.4 hypothetical protein compare
Psest_2136 +0.8 5.0 Predicted homoserine dehydrogenase compare
Psest_1661 +0.8 1.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_4310 +0.8 1.4 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_4103 +0.7 1.1 AraC-type DNA-binding domain-containing proteins compare
Psest_0845 +0.7 0.8 hypothetical protein compare
Psest_0725 +0.7 1.0 Negative regulator of beta-lactamase expression compare
Psest_1677 +0.7 1.3 Protein-tyrosine-phosphatase compare
Psest_2538 +0.7 0.7 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1719 +0.7 4.2 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_1940 +0.7 2.8 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_1215 +0.7 1.3 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_3494 +0.7 1.8 hypothetical protein compare
Psest_1718 +0.7 2.4 flagellar hook-basal body complex protein FliE compare
Psest_0536 +0.7 3.5 thiamine-phosphate pyrophosphorylase compare
Psest_0444 +0.7 2.7 methionine-S-sulfoxide reductase compare
Psest_1643 +0.7 1.0 hypothetical protein compare
Psest_4243 +0.7 2.3 type VI secretion lipoprotein, VC_A0113 family compare
Psest_3519 +0.7 2.8 Uncharacterized conserved protein compare
Psest_1218 +0.7 2.0 Predicted endonuclease containing a URI domain compare
Psest_0191 +0.7 0.9 PAS domain S-box compare
Psest_1783 +0.7 1.7 Predicted transporter component compare
Psest_4220 +0.7 1.9 Protein of unknown function (DUF2782). compare
Psest_3937 +0.7 1.1 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3507 +0.7 2.0 FOG: EAL domain compare
Psest_1322 +0.7 1.2 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_3913 +0.7 1.9 hypothetical protein compare
Psest_0310 +0.7 2.3 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3838 +0.6 1.4 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_3484 +0.6 3.2 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3370 +0.6 3.5 prepilin-type N-terminal cleavage/methylation domain compare
Psest_3306 +0.6 2.7 conserved hypothetical integral membrane protein compare
Psest_0159 +0.6 1.9 Uncharacterized protein conserved in bacteria compare
Psest_4403 +0.6 4.0 hypothetical protein compare
Psest_2239 +0.6 1.8 RES domain. compare
Psest_2308 +0.6 0.8 Predicted Fe-S protein compare
Psest_3374 +0.6 4.6 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_3518 +0.6 0.8 Transcriptional regulators compare
Psest_2470 +0.6 1.1 hypothetical protein compare
Psest_1421 +0.6 2.0 Glutathione S-transferase compare
Psest_3895 +0.6 2.3 hypothetical protein compare
Psest_1471 +0.6 2.0 Predicted membrane protein compare
Psest_0048 +0.6 3.2 ABC-type multidrug transport system, ATPase and permease components compare
Psest_0311 +0.6 3.2 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_4247 +0.6 1.9 Serine/threonine protein phosphatase compare
Psest_4256 +0.6 1.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2369 +0.6 2.4 Transcriptional regulator compare
Psest_1951 +0.6 1.0 Uncharacterized protein conserved in bacteria compare
Psest_1923 +0.6 3.1 adhesin-associated BNR repeat protein (from data) compare
Psest_1392 +0.6 1.8 ABC-type uncharacterized transport systems, ATPase components compare
Psest_1162 +0.6 1.8 Spermidine synthase compare
Psest_2643 +0.6 1.4 Beta-glucosidase-related glycosidases compare
Psest_1370 +0.6 1.9 hypothetical protein compare
Psest_1729 +0.6 3.6 flagellar motor switch protein FliM compare
Psest_4209 +0.6 1.2 Uncharacterized conserved small protein compare
Psest_0503 +0.6 0.5 Acyl dehydratase compare
Psest_4390 +0.5 2.0 hypothetical protein compare
Psest_1912 +0.5 1.9 Protein of unknown function (DUF1260). compare
Psest_1681 +0.5 1.9 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_1563 +0.5 1.4 Protein of unknown function (DUF548). compare
Psest_3050 +0.5 1.6 tRNA_Gly_CCC compare
Psest_0655 +0.5 1.0 Chemotaxis signal transduction protein compare
Psest_3879 +0.5 2.0 Curlin associated repeat. compare
Psest_3974 +0.5 3.0 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_2348 +0.5 1.9 urea carboxylase-associated protein 2 compare
Psest_2153 +0.5 1.5 formate dehydrogenase, gamma subunit compare
Psest_0446 +0.5 2.8 hypothetical protein compare
Psest_2859 +0.5 2.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0592 +0.5 1.3 hypothetical protein compare
Psest_3702 +0.5 1.2 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase compare
Psest_4382 +0.5 4.5 hypothetical protein compare
Psest_0030 +0.5 1.4 Putative NADH-flavin reductase compare
Psest_3816 +0.5 0.6 DNA-directed RNA polymerase, omega subunit compare
Psest_1731 +0.5 1.2 flagellar biosynthetic protein FliO compare
Psest_4055 +0.5 2.8 ABC transporter, substrate-binding protein, aliphatic sulfonates family compare
Psest_3877 +0.5 2.4 Predicted membrane protein compare
Psest_0889 +0.5 2.3 Lactoylglutathione lyase and related lyases compare
Psest_2384 +0.5 1.6 Uncharacterized protein conserved in bacteria compare
Psest_4309 +0.5 1.2 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_1177 +0.5 1.5 pyruvate kinase compare
Psest_1444 +0.5 2.5 Curli production assembly/transport component CsgF. compare
Psest_1655 +0.5 2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_4184 +0.5 2.4 hypothetical protein compare
Psest_2945 +0.5 0.5 septum site-determining protein MinC compare
Psest_2872 +0.5 1.2 protein RecA compare
Psest_1899 +0.5 2.3 ABC-type sugar transport systems, ATPase components compare
Psest_1404 +0.5 2.6 Methyltransferase domain. compare
Psest_1123 +0.5 3.7 adhesin-associated sorting protein (DUF1329) (from data) compare
Psest_2225 +0.5 1.0 Diacylglycerol kinase compare
Psest_0877 +0.5 2.4 Restriction endonuclease compare
Psest_2312 +0.5 2.4 Small-conductance mechanosensitive channel compare
Psest_0814 +0.5 0.9 MoxR-like ATPases compare
Psest_1805 +0.5 1.3 integration host factor, beta subunit compare
Psest_2138 +0.5 1.5 RND family efflux transporter, MFP subunit compare
Psest_3304 +0.5 2.2 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0357 +0.5 0.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1737 +0.5 2.4 flagellar biosynthesis protein FlhA compare
Psest_2420 +0.4 2.0 Transcriptional regulator compare
Psest_3127 +0.4 1.9 Uncharacterized conserved protein compare
Psest_0015 +0.4 1.4 Tetratricopeptide repeat. compare
Psest_4090 +0.4 1.7 diaminobutyrate acetyltransferase compare
Psest_3861 +0.4 1.8 Uncharacterized conserved protein compare
Psest_1849 +0.4 1.3 Predicted glutamine amidotransferase compare
Psest_2135 +0.4 2.7 Peroxiredoxin compare
Psest_1214 +0.4 2.1 Cytosine deaminase and related metal-dependent hydrolases compare
Psest_2793 +0.4 1.2 hypothetical protein compare
Psest_1078 +0.4 1.8 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_2964 +0.4 1.9 flagellar basal-body rod protein FlgF compare
Psest_2667 +0.4 1.1 Uncharacterized protein involved in propionate catabolism compare
Psest_2950 +0.4 1.7 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Psest_1479 +0.4 1.2 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_1884 +0.4 0.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1720 +0.4 2.7 flagellar motor switch protein FliG compare
Psest_1360 +0.4 1.4 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_1349 +0.4 1.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3230 +0.4 2.5 Uncharacterized conserved protein compare
Psest_1456 +0.4 1.4 Protein of unknown function (DUF2892). compare
Psest_2969 +0.4 2.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0826 +0.4 2.3 Cytochrome c compare
Psest_2261 +0.4 1.9 hypothetical protein compare
Psest_0348 +0.4 1.6 hypothetical protein compare
Psest_1734 +0.4 1.7 flagellar biosynthetic protein FliR compare
Psest_0833 +0.4 1.3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
Psest_1391 +0.4 1.8 ABC-type uncharacterized transport system, permease component compare
Psest_1459 +0.4 1.2 hypothetical protein compare
Psest_0588 +0.4 2.4 Short-chain dehydrogenases of various substrate specificities compare
Psest_1765 +0.4 2.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3908 +0.4 0.9 Cytochrome c553 compare
Psest_2510 +0.4 2.7 chromosome segregation protein SMC, common bacterial type compare
Psest_4128 +0.4 0.7 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3761 +0.4 1.1 Transcription elongation factor compare
Psest_2489 +0.4 2.5 branched-chain amino acid uptake carrier compare
Psest_1999 +0.4 0.4 pseudouridine synthase compare
Psest_2462 +0.4 2.9 selenium donor protein compare
Psest_0537 +0.4 0.7 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0855 +0.4 2.2 NAD-dependent aldehyde dehydrogenases compare
Psest_2788 +0.4 1.8 Phosphoglycerate dehydrogenase and related dehydrogenases compare
Psest_1722 +0.4 3.0 flagellar protein export ATPase FliI compare
Psest_4140 +0.4 2.5 Acyl-CoA dehydrogenases compare
Psest_2411 +0.4 2.1 PAS domain S-box compare
Psest_1447 +0.4 1.6 Putative threonine efflux protein compare
Psest_4106 +0.4 1.2 formate dehydrogenase, gamma subunit compare
Psest_0732 +0.4 1.5 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_3789 +0.4 1.3 Uncharacterized protein containing double-stranded beta helix domain compare
Psest_3080 +0.4 0.8 AraC-type DNA-binding domain-containing proteins compare
Psest_1283 +0.4 1.9 Membrane proteins related to metalloendopeptidases compare
Psest_2105 +0.4 2.0 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain compare
Psest_0799 +0.4 1.3 Uncharacterized protein involved in response to NO compare
Psest_2271 +0.4 0.9 coenzyme PQQ biosynthesis protein PqqD compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas stutzeri RCH2

For nitrogen source Sodium nitrate across organisms