Experiment set13H24 for Pseudomonas stutzeri RCH2

Compare to:

Cytosine nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3944 -6.9 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3931 -6.7 -6.6 Signal transduction histidine kinase, nitrogen specific compare
Psest_3862 -6.3 -15.9 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3647 -6.1 -8.4 Indole-3-glycerol phosphate synthase compare
Psest_3932 -6.0 -4.2 nitrogen regulation protein NR(I) compare
Psest_3649 -6.0 -10.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2584 -5.9 -5.8 Phosphoribosylanthranilate isomerase compare
Psest_3711 -5.9 -21.6 Glutamate synthase domain 2 compare
Psest_3710 -5.9 -20.9 glutamate synthase small subunit family protein, proteobacterial compare
Psest_2578 -5.9 -17.0 O-succinylhomoserine sulfhydrylase compare
Psest_2590 -5.8 -1.7 3-isopropylmalate dehydratase, small subunit compare
Psest_0062 -5.8 -16.7 tryptophan synthase, alpha subunit compare
Psest_0508 -5.8 -11.8 gamma-glutamyl phosphate reductase compare
Psest_3298 -5.8 -14.5 histidinol dehydrogenase compare
Psest_3317 -5.7 -7.3 Phosphotransferase System HPr (HPr) Family compare
Psest_0152 -5.7 -9.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_3866 -5.7 -22.5 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3648 -5.6 -10.8 anthranilate phosphoribosyltransferase compare
Psest_3650 -5.6 -19.2 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0279 -5.5 -9.2 methionine biosynthesis protein MetW compare
Psest_3226 -5.5 -1.6 Predicted membrane protein compare
Psest_0153 -5.5 -17.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0155 -5.5 -9.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3943 -5.5 -6.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0280 -5.4 -18.6 homoserine O-acetyltransferase compare
Psest_3864 -5.3 -19.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0063 -5.2 -14.7 tryptophan synthase, beta subunit compare
Psest_2845 -5.1 -15.8 [Protein-PII] uridylyltransferase compare
Psest_0952 -5.1 -5.0 Uncharacterized conserved protein compare
Psest_3384 -5.0 -13.3 glutamate 5-kinase compare
Psest_3299 -4.9 -16.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2591 -4.6 -5.8 3-isopropylmalate dehydratase, large subunit compare
Psest_2589 -4.5 -12.7 3-isopropylmalate dehydrogenase compare
Psest_0325 -4.3 -15.7 Putative threonine efflux protein compare
Psest_2333 -4.3 -1.7 Protein of unknown function (DUF3359). compare
Psest_1772 -4.2 -7.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0687 -4.2 -12.3 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0326 -4.2 -16.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0773 -4.2 -7.0 Cytosine deaminase and related metal-dependent hydrolases conserved
Psest_0313 -3.9 -10.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2579 -3.8 -5.7 amidophosphoribosyltransferase compare
Psest_0953 -3.7 -11.8 iron-sulfur cluster-binding protein compare
Psest_0774 -3.6 -15.8 cytosine permease (from data) conserved
Psest_0327 -3.5 -8.8 Transcriptional regulator compare
Psest_0498 -3.5 -2.4 ribosome small subunit-dependent GTPase A compare
Psest_3818 -3.5 -11.0 endoribonuclease L-PSP, putative compare
Psest_0954 -3.3 -7.0 Fe-S oxidoreductase compare
Psest_2324 -3.3 -22.6 hypothetical protein compare
Psest_1640 -3.2 -14.7 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3338 -3.1 -3.0 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2325 -2.9 -16.3 alpha-L-glutamate ligase-related protein compare
Psest_1295 -2.9 -10.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2323 -2.9 -19.3 Uncharacterized protein conserved in archaea compare
Psest_3322 -2.7 -21.1 TIGR02099 family protein compare
Psest_2088 -2.7 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_1724 -2.6 -6.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1999 -2.6 -2.1 pseudouridine synthase compare
Psest_1474 -2.5 -2.9 phosphoribosylaminoimidazole synthetase compare
Psest_3159 -2.4 -7.6 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1473 -2.4 -9.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3720 -2.4 -17.6 penicillin-binding protein, 1A family compare
Psest_0193 -2.3 -2.2 conserved hypothetical protein compare
Psest_3351 -2.3 -9.4 peptide chain release factor 3 compare
Psest_3771 -2.3 -17.4 probable ammonium transporter, marine subtype compare
Psest_2650 -2.3 -4.7 hypothetical protein compare
Psest_0442 -2.3 -4.0 ATPases of the AAA+ class compare
Psest_0445 -2.2 -14.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2810 -2.2 -6.5 5'/3'-nucleotidase SurE compare
Psest_4085 -2.1 -14.4 Biotin carboxylase compare
Psest_3297 -2.1 -11.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0722 -2.1 -9.8 Predicted ATPase compare
Psest_2714 -2.0 -2.4 7-cyano-7-deazaguanine reductase compare
Psest_2104 -1.9 -2.8 IscR-regulated protein YhgI compare
Psest_4201 -1.9 -2.6 general secretion pathway protein F compare
Psest_1013 -1.9 -3.7 phosphoribosylamine--glycine ligase compare
Psest_1111 -1.9 -4.2 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3178 -1.9 -4.2 formyltetrahydrofolate deformylase compare
Psest_3998 -1.8 -8.7 glutamate--cysteine ligase compare
Psest_0398 -1.8 -6.9 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_1037 -1.8 -2.3 acetolactate synthase, small subunit compare
Psest_2809 -1.7 -2.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_4084 -1.7 -12.8 oxaloacetate decarboxylase alpha subunit compare
Psest_0136 -1.7 -10.7 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_1679 -1.7 -2.9 ribonuclease, Rne/Rng family compare
Psest_0138 -1.7 -10.0 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3339 -1.6 -4.8 Signal transduction histidine kinase compare
Psest_0137 -1.6 -8.5 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_2718 -1.6 -2.3 hypothetical protein compare
Psest_2329 -1.6 -12.2 Transcriptional regulator compare
Psest_2641 -1.6 -11.6 Conserved secreted protein compare
Psest_1012 -1.6 -4.8 Signal transduction histidine kinase compare
Psest_1804 -1.5 -2.5 Superfamily II DNA and RNA helicases compare
Psest_0489 -1.5 -1.5 phosphoserine phosphatase SerB compare
Psest_0485 -1.5 -4.5 clan AA aspartic protease, TIGR02281 family compare
Psest_3766 -1.5 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_3288 -1.5 -10.7 type IV-A pilus assembly ATPase PilB compare
Psest_1260 -1.5 -6.8 type IV pilus biogenesis/stability protein PilW compare
Psest_0300 -1.4 -8.3 Methyl-accepting chemotaxis protein compare
Psest_3809 -1.4 -3.9 hypothetical protein compare
Psest_0411 -1.4 -8.6 biotin synthetase compare
Psest_4086 -1.4 -7.0 Transcriptional regulator compare
Psest_0491 -1.4 -9.1 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0191 -1.4 -1.4 PAS domain S-box compare
Psest_0161 -1.3 -2.3 Membrane-bound metallopeptidase compare
Psest_4044 -1.3 -3.6 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0297 -1.3 -3.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0955 -1.3 -5.4 D,L-lactate:H+ symporter (from data) compare
Psest_2532 -1.3 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_1814 -1.3 -8.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3960 -1.3 -1.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2527 -1.3 -6.6 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3719 -1.3 -8.6 type IV pilus assembly protein PilM compare
Psest_0146 -1.3 -6.5 Uncharacterized protein involved in outer membrane biogenesis compare
Psest_3772 -1.2 -3.4 ammonium transporter compare
Psest_1809 -1.2 -8.3 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_3287 -1.2 -4.4 Type II secretory pathway, component PulF compare
Psest_3717 -1.2 -5.1 Tfp pilus assembly protein PilO compare
Psest_0139 -1.2 -6.2 ABC-type histidine transport system, ATPase component compare
Psest_2646 -1.2 -2.2 SOS regulatory protein LexA compare
Psest_3113 -1.2 -2.6 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1354 -1.2 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_3806 -1.2 -5.5 Phosphomannomutase compare
Psest_1974 -1.2 -4.2 integration host factor, alpha subunit compare
Psest_1813 -1.1 -7.9 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3954 -1.1 -2.7 Small protein A (tmRNA-binding) compare
Psest_2988 -1.1 -4.9 aspartate kinase, monofunctional class compare
Psest_1506 -1.1 -3.7 queuosine biosynthesis protein QueC compare
Psest_2504 -1.1 -4.5 flagellar biosynthetic protein FliS compare
Psest_0024 -1.1 -6.8 LysM domain. compare
Psest_2018 -1.1 -2.4 Uncharacterized conserved protein compare
Psest_3092 -1.1 -1.8 ribonuclease III, bacterial compare
Psest_0257 -1.1 -1.9 Predicted Zn-dependent peptidases compare
Psest_2530 -1.1 -3.9 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3014 -1.1 -2.1 cob(I)alamin adenosyltransferase compare
Psest_3180 -1.1 -6.4 Exonuclease I compare
Psest_1695 -1.1 -2.2 Tfp pilus assembly protein PilZ compare
Psest_2027 -1.1 -7.0 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_1805 -1.1 -2.0 integration host factor, beta subunit compare
Psest_3377 -1.1 -1.1 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3565 -1.1 -1.3 hypothetical protein compare
Psest_1518 -1.1 -2.9 tRNA_Ser_CGA compare
Psest_1488 -1.0 -8.6 outer membrane porin, OprD family. compare
Psest_3715 -1.0 -8.5 type IV pilus secretin (or competence protein) PilQ compare
Psest_3289 -1.0 -6.4 prepilin-type N-terminal cleavage/methylation domain compare
Psest_3921 -1.0 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0212 -1.0 -1.8 exodeoxyribonuclease V, gamma subunit compare
Psest_1920 -1.0 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3375 -1.0 -5.9 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1765 -1.0 -4.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0814 -1.0 -2.1 MoxR-like ATPases compare
Psest_0958 -1.0 -5.7 Oligoketide cyclase/lipid transport protein compare
Psest_2946 -1.0 -2.8 septum site-determining protein MinD compare
Psest_0999 -1.0 -2.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4170 -1.0 -1.9 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_0691 -1.0 -7.2 ribonuclease R compare
Psest_1306 -1.0 -1.5 hypothetical protein compare
Psest_0412 -1.0 -6.6 8-amino-7-oxononanoate synthase compare
Psest_1397 -1.0 -2.6 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_3790 -1.0 -6.0 Cytochrome c5 compare
Psest_3716 -1.0 -6.7 Tfp pilus assembly protein PilP compare
Psest_1242 -1.0 -1.3 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0277 -1.0 -1.2 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_2953 -0.9 -2.4 Histone acetyltransferase compare
Psest_1516 -0.9 -1.7 Uncharacterized lipoprotein compare
Psest_0285 -0.9 -5.4 pilus retraction protein PilT compare
Psest_0484 -0.9 -3.2 hypothetical protein compare
Psest_3718 -0.9 -3.4 Tfp pilus assembly protein PilN compare
Psest_2872 -0.9 -1.4 protein RecA compare
Psest_1496 -0.9 -0.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_1510 -0.9 -2.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0705 -0.9 -6.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0998 -0.9 -2.3 poly(A) polymerase compare
Psest_0346 -0.9 -1.8 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_0831 -0.9 -1.0 hypothetical protein compare
Psest_2756 -0.9 -1.4 hypothetical protein compare
Psest_2158 -0.9 -7.1 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_1527 -0.9 -6.1 Na+/proline symporter compare
Psest_0306 -0.9 -6.1 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2967 -0.8 -2.4 flagellar basal-body rod protein FlgC compare
Psest_2864 -0.8 -2.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1509 -0.8 -4.9 quinolinate synthetase complex, A subunit compare
Psest_0175 -0.8 -4.9 Xaa-Pro aminopeptidase compare
Psest_3185 -0.8 -1.3 MoxR-like ATPases compare
Psest_1812 -0.8 -5.3 pseudaminic acid CMP-transferase compare
Psest_2719 -0.8 -1.7 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0207 -0.8 -2.8 hypothetical protein compare
Psest_1388 -0.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_2955 -0.8 -2.3 Predicted transcriptional regulator with C-terminal CBS domains compare
Psest_4298 -0.8 -0.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_4005 -0.8 -3.4 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_1486 -0.8 -3.1 hypothetical protein compare
Psest_1292 -0.8 -4.3 monothiol glutaredoxin, Grx4 family compare
Psest_4315 -0.8 -1.9 ABC-type metal ion transport system, permease component compare
Psest_2651 -0.8 -2.2 DNA topoisomerase I, bacterial compare
Psest_0413 -0.8 -3.4 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3777 -0.8 -1.8 diguanylate cyclase (GGDEF) domain compare
Psest_0248 -0.8 -4.0 Transcriptional regulator compare
Psest_2531 -0.8 -5.2 cytochrome c oxidase accessory protein FixG compare
Psest_3212 -0.8 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1029 -0.8 -1.9 Regulator of competence-specific genes compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Cytosine in Pseudomonas stutzeri RCH2

For nitrogen source Cytosine across organisms