Experiment set13H21 for Pseudomonas stutzeri RCH2

Compare to:

Adenine hydrochloride hydrate nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Psest_0845 +2.0 2.7 hypothetical protein compare
Psest_3531 +1.2 2.3 Peptidase propeptide and YPEB domain. compare
Psest_2260 +1.1 10.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1635 +1.1 10.6 Signal transduction histidine kinase compare
Psest_2613 +1.1 2.0 hypothetical protein compare
Psest_1721 +1.1 2.3 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1840 +1.0 9.6 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_0259 +1.0 1.2 cell division ATP-binding protein FtsE compare
Psest_0575 +1.0 1.2 HrpA-like helicases compare
Psest_1215 +0.9 2.6 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_0538 +0.9 9.1 Signal transduction histidine kinase compare
Psest_1663 +0.9 2.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_1737 +0.9 3.7 flagellar biosynthesis protein FlhA compare
Psest_3247 +0.9 1.9 Uncharacterized membrane protein compare
Psest_2122 +0.9 1.3 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1656 +0.9 2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3518 +0.8 1.0 Transcriptional regulators compare
Psest_1176 +0.8 3.3 Urea transporter compare
Psest_1731 +0.8 2.2 flagellar biosynthetic protein FliO compare
Psest_2647 +0.8 3.4 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_0857 +0.8 1.6 Membrane transporters of cations and cationic drugs compare
Psest_2015 +0.8 2.7 Type II secretory pathway, component PulD compare
Psest_3651 +0.8 2.6 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1783 +0.8 2.8 Predicted transporter component compare
Psest_1765 +0.7 3.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1870 +0.7 1.3 Transcriptional regulators compare
Psest_1602 +0.7 2.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2892 +0.7 2.1 Transcriptional regulator compare
Psest_3816 +0.7 1.4 DNA-directed RNA polymerase, omega subunit compare
Psest_3693 +0.7 2.4 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0592 +0.7 2.9 hypothetical protein compare
Psest_3455 +0.7 1.8 Dihaem cytochrome c. compare
Psest_4209 +0.7 1.4 Uncharacterized conserved small protein compare
Psest_1626 +0.7 3.4 Predicted integral membrane protein compare
Psest_2565 +0.7 2.2 Transcriptional regulator compare
Psest_1173 +0.7 2.6 hypothetical protein compare
Psest_1122 +0.7 5.5 putative adhesin (DUF1302) (from data) compare
Psest_1366 +0.7 0.9 hypothetical protein compare
Psest_1924 +0.6 5.5 adhesin-associated MmpL efflux pump (from data) compare
Psest_1001 +0.6 1.9 hypothetical protein compare
Psest_4128 +0.6 1.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1657 +0.6 1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3536 +0.6 1.1 hypothetical protein compare
Psest_1909 +0.6 2.6 Phosphohistidine phosphatase SixA compare
Psest_0357 +0.6 1.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1732 +0.6 1.9 flagellar biosynthetic protein FliP compare
Psest_2048 +0.6 1.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0867 +0.6 1.4 hypothetical protein compare
Psest_2899 +0.6 1.4 hypothetical protein compare
Psest_1214 +0.6 2.4 Cytosine deaminase and related metal-dependent hydrolases compare
Psest_4280 +0.6 1.9 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_0310 +0.6 2.1 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3048 +0.6 0.9 hypothetical protein compare
Psest_3039 +0.6 1.2 periplasmic nitrate reductase, NapE protein compare
Psest_3697 +0.6 1.3 Outer membrane lipoprotein carrier protein LolA. compare
Psest_1796 +0.6 2.3 Predicted NAD/FAD-dependent oxidoreductase compare
Psest_2850 +0.6 0.8 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1734 +0.6 2.4 flagellar biosynthetic protein FliR compare
Psest_0487 +0.6 2.3 Uncharacterized protein conserved in bacteria compare
Psest_1566 +0.5 3.1 Cation/multidrug efflux pump compare
Psest_1622 +0.5 1.8 hypothetical protein compare
Psest_0823 +0.5 1.8 Transcriptional regulators compare
Psest_1718 +0.5 1.9 flagellar hook-basal body complex protein FliE compare
Psest_3031 +0.5 0.5 hypothetical protein compare
Psest_3215 +0.5 1.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_1720 +0.5 3.2 flagellar motor switch protein FliG compare
Psest_0744 +0.5 0.9 Uncharacterized conserved protein compare
Psest_3562 +0.5 1.5 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_4103 +0.5 0.8 AraC-type DNA-binding domain-containing proteins compare
Psest_2748 +0.5 0.8 Transcriptional regulator compare
Psest_3902 +0.5 2.1 hypothetical protein compare
Psest_1473 +0.5 2.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1728 +0.5 2.7 Flagellar basal body-associated protein compare
Psest_1863 +0.5 1.3 hypothetical protein compare
Psest_2312 +0.5 3.0 Small-conductance mechanosensitive channel compare
Psest_0054 +0.5 2.5 hypothetical protein compare
Psest_0455 +0.5 3.3 ADP-heptose:LPS heptosyltransferase compare
Psest_2240 +0.5 0.8 hypothetical protein compare
Psest_3449 +0.5 0.8 DJ-1 family protein compare
Psest_0095 +0.5 2.1 phosphonate C-P lyase system protein PhnH compare
Psest_0993 +0.5 3.8 Glucose-6-phosphate isomerase compare
Psest_1719 +0.5 2.5 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_1567 +0.5 1.6 Transcriptional regulator compare
Psest_2594 +0.5 2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1370 +0.5 2.4 hypothetical protein compare
Psest_1923 +0.5 2.1 adhesin-associated BNR repeat protein (from data) compare
Psest_3270 +0.5 1.6 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2135 +0.5 2.3 Peroxiredoxin compare
Psest_1179 +0.5 1.1 2-hydroxy-3-oxopropionate reductase compare
Psest_2066 +0.5 0.7 ABC-type uncharacterized transport system, permease component compare
Psest_2136 +0.5 2.9 Predicted homoserine dehydrogenase compare
Psest_3913 +0.5 1.5 hypothetical protein compare
Psest_1326 +0.5 2.6 Uncharacterized conserved protein compare
Psest_2539 +0.5 1.4 adenine phosphoribosyltransferase compare
Psest_0346 +0.5 1.2 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_3565 +0.5 1.2 hypothetical protein compare
Psest_3850 +0.5 0.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1794 +0.5 1.6 Flagellar motor protein compare
Psest_1195 +0.5 2.1 xanthine permease compare
Psest_0417 +0.5 1.2 Acyl-CoA dehydrogenases compare
Psest_1186 +0.5 2.5 heavy metal sensor kinase compare
Psest_3064 +0.5 1.7 hypothetical protein compare
Psest_3854 +0.5 2.8 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_1516 +0.5 1.5 Uncharacterized lipoprotein compare
Psest_0846 +0.5 2.0 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1951 +0.5 1.2 Uncharacterized protein conserved in bacteria compare
Psest_1735 +0.5 2.4 flagellar biosynthetic protein FlhB compare
Psest_4220 +0.5 0.9 Protein of unknown function (DUF2782). compare
Psest_3780 +0.5 1.2 Transcriptional regulator compare
Psest_1725 +0.5 3.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1160 +0.4 0.9 Uncharacterized conserved protein compare
Psest_0779 +0.4 2.0 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
Psest_3371 +0.4 2.6 type IV pilus modification protein PilV compare
Psest_4100 +0.4 1.5 Uncharacterized protein conserved in bacteria compare
Psest_1632 +0.4 1.2 Predicted permeases compare
Psest_1419 +0.4 2.0 Transcriptional regulator compare
Psest_1740 +0.4 2.7 RNA polymerase sigma factor, FliA/WhiG family compare
Psest_1322 +0.4 0.9 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_2538 +0.4 1.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3819 +0.4 1.6 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0778 +0.4 1.9 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_1598 +0.4 2.0 heavy metal response regulator compare
Psest_3157 +0.4 2.0 hypothetical protein compare
Psest_0459 +0.4 3.4 Predicted carbamoyl transferase, NodU family compare
Psest_1563 +0.4 0.9 Protein of unknown function (DUF548). compare
Psest_2348 +0.4 1.4 urea carboxylase-associated protein 2 compare
Psest_3356 +0.4 1.8 D-fructose-responsive transcription factor compare
Psest_1899 +0.4 2.6 ABC-type sugar transport systems, ATPase components compare
Psest_4273 +0.4 2.9 Lysophospholipase compare
Psest_2965 +0.4 3.6 fagellar hook-basal body proteins compare
Psest_1960 +0.4 1.7 Bacterial protein of unknown function (DUF903). compare
Psest_2232 +0.4 3.4 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_0594 +0.4 2.0 hypothetical protein compare
Psest_3535 +0.4 1.4 hypothetical protein compare
Psest_1576 +0.4 2.5 Periplasmic glucans biosynthesis protein compare
Psest_3533 +0.4 1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2918 +0.4 1.3 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) compare
Psest_2308 +0.4 0.6 Predicted Fe-S protein compare
Psest_0664 +0.4 2.0 diguanylate cyclase (GGDEF) domain compare
Psest_3443 +0.4 1.9 Predicted acyltransferases compare
Psest_1722 +0.4 2.8 flagellar protein export ATPase FliI compare
Psest_2281 +0.4 1.8 Phosphoserine aminotransferase compare
Psest_4132 +0.4 1.2 alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) compare
Psest_1376 +0.4 2.0 hypothetical protein compare
Psest_2762 +0.4 1.1 hypothetical protein compare
Psest_1601 +0.4 1.1 Signal transduction histidine kinase compare
Psest_0702 +0.4 1.4 Methyl-accepting chemotaxis protein compare
Psest_4184 +0.4 1.5 hypothetical protein compare
Psest_3492 +0.4 1.2 hypothetical protein compare
Psest_0785 +0.4 1.4 Thioredoxin reductase compare
Psest_3450 +0.4 1.8 Permeases compare
Psest_3812 +0.4 1.5 Uncharacterized protein conserved in bacteria compare
Psest_2720 +0.4 1.5 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3824 +0.4 1.3 Predicted membrane protein compare
Psest_3334 +0.4 1.0 Integral membrane protein CcmA involved in cell shape determination compare
Psest_2293 +0.4 0.7 hypothetical protein compare
Psest_2119 +0.4 1.7 Glycine/D-amino acid oxidases (deaminating) compare
Psest_4008 +0.4 3.0 PAS domain S-box compare
Psest_1392 +0.4 1.7 ABC-type uncharacterized transport systems, ATPase components compare
Psest_2629 +0.4 1.4 Flp pilus assembly protein, pilin Flp compare
Psest_2395 +0.4 2.4 Uncharacterized conserved protein compare
Psest_2274 +0.4 1.6 coenzyme PQQ biosynthesis protein A compare
Psest_0759 +0.4 0.7 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_3772 +0.4 1.1 ammonium transporter compare
Psest_1356 +0.4 2.1 Predicted periplasmic protein compare
Psest_1624 +0.4 2.0 Transcriptional regulator compare
Psest_0064 +0.4 1.1 Transcriptional regulator compare
Psest_2047 +0.4 0.9 Signal transduction histidine kinase compare
Psest_1083 +0.4 2.7 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Psest_1974 +0.4 1.1 integration host factor, alpha subunit compare
Psest_0716 +0.4 0.9 Protein of unknown function (DUF3094). compare
Psest_2634 +0.4 1.5 glycine betaine aldehyde dehydrogenase compare
Psest_0410 +0.4 1.6 Predicted amidophosphoribosyltransferases compare
Psest_1152 +0.4 1.5 hypothetical protein compare
Psest_4135 +0.4 2.3 Ketosteroid isomerase homolog compare
Psest_2434 +0.4 0.9 Protein of unknown function (DUF2892). compare
Psest_0134 +0.4 1.8 type VI secretion-associated protein, VC_A0119 family compare
Psest_3739 +0.4 1.5 Small-conductance mechanosensitive channel compare
Psest_1994 +0.4 1.1 Amidases related to nicotinamidase compare
Psest_0855 +0.3 1.5 NAD-dependent aldehyde dehydrogenases compare
Psest_0040 +0.3 1.9 Protein of unknown function (DUF2934). compare
Psest_1749 +0.3 1.9 Chemotaxis signal transduction protein compare
Psest_0232 +0.3 2.0 Predicted dehydrogenase compare
Psest_4062 +0.3 2.0 sulfate ABC transporter, permease protein CysW compare
Psest_3409 +0.3 1.4 hypothetical protein compare
Psest_1884 +0.3 0.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1089 +0.3 1.5 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_4319 +0.3 1.6 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Psest_0813 +0.3 1.6 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_2545 +0.3 0.7 recombination protein RecR compare
Psest_2164 +0.3 1.8 Uncharacterized conserved protein compare
Psest_0440 +0.3 1.5 hypothetical protein compare
Psest_3372 +0.3 2.0 Tfp pilus assembly protein PilW compare
Psest_1161 +0.3 1.0 E3 Ubiquitin ligase. compare
Psest_1389 +0.3 1.9 hypothetical protein compare
Psest_3462 +0.3 1.6 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2966 +0.3 2.2 Flagellar hook capping protein compare
Psest_3422 +0.3 0.9 hypothetical protein compare
Psest_3077 +0.3 1.0 Protein of unknown function (DUF3203). compare
Psest_3476 +0.3 0.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source Adenine hydrochloride hydrate in Pseudomonas stutzeri RCH2

For nitrogen source Adenine hydrochloride hydrate across organisms