Experiment set13H20 for Pseudomonas stutzeri RCH2

Compare to:

Parabanic Acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3649 -6.5 -7.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3317 -6.5 -7.7 Phosphotransferase System HPr (HPr) Family compare
Psest_3944 -6.4 -6.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2591 -5.9 -4.0 3-isopropylmalate dehydratase, large subunit compare
Psest_3648 -5.5 -11.7 anthranilate phosphoribosyltransferase compare
Psest_3647 -5.5 -9.2 Indole-3-glycerol phosphate synthase compare
Psest_0508 -5.5 -12.7 gamma-glutamyl phosphate reductase compare
Psest_3711 -5.4 -24.9 Glutamate synthase domain 2 compare
Psest_2584 -5.3 -8.0 Phosphoribosylanthranilate isomerase compare
Psest_3650 -5.2 -17.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0313 -5.2 -5.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3384 -5.1 -11.4 glutamate 5-kinase compare
Psest_3710 -5.1 -23.3 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3298 -5.0 -14.8 histidinol dehydrogenase compare
Psest_0155 -5.0 -7.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3864 -5.0 -20.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3866 -4.9 -21.5 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0952 -4.9 -4.8 Uncharacterized conserved protein compare
Psest_3862 -4.9 -18.4 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0279 -4.8 -9.1 methionine biosynthesis protein MetW compare
Psest_0153 -4.8 -13.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0687 -4.7 -12.3 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0545 -4.6 -14.3 urease accessory protein UreG conserved
Psest_0062 -4.6 -12.7 tryptophan synthase, alpha subunit compare
Psest_2845 -4.5 -16.2 [Protein-PII] uridylyltransferase compare
Psest_0152 -4.5 -8.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_0954 -4.4 -11.3 Fe-S oxidoreductase compare
Psest_0561 -4.4 -17.0 Urease accessory protein UreH conserved
Psest_0063 -4.4 -13.1 tryptophan synthase, beta subunit compare
Psest_3299 -4.4 -16.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2590 -4.3 -1.8 3-isopropylmalate dehydratase, small subunit compare
Psest_3932 -4.3 -8.8 nitrogen regulation protein NR(I) compare
Psest_0280 -4.2 -14.9 homoserine O-acetyltransferase compare
Psest_3226 -4.1 -1.7 Predicted membrane protein compare
Psest_2578 -4.1 -13.9 O-succinylhomoserine sulfhydrylase compare
Psest_3931 -4.0 -5.1 Signal transduction histidine kinase, nitrogen specific compare
Psest_0547 -3.9 -6.0 Urease accessory protein UreF compare
Psest_0325 -3.9 -16.2 Putative threonine efflux protein compare
Psest_3818 -3.9 -8.1 endoribonuclease L-PSP, putative compare
Psest_0953 -3.8 -10.1 iron-sulfur cluster-binding protein compare
Psest_2714 -3.8 -3.9 7-cyano-7-deazaguanine reductase compare
Psest_0557 -3.8 -13.9 Urease (EC 3.5.1.5) (from data) conserved
Psest_0560 -3.7 -13.7 Urease (EC 3.5.1.5) (from data) conserved
Psest_3943 -3.7 -6.1 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0548 -3.7 -9.0 Urease accessory protein UreE conserved
Psest_2589 -3.6 -9.7 3-isopropylmalate dehydrogenase compare
Psest_2579 -3.6 -4.9 amidophosphoribosyltransferase compare
Psest_0558 -3.6 -1.5 urease, beta subunit compare
Psest_2088 -3.6 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_1295 -3.5 -9.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0326 -3.5 -14.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_4085 -3.3 -16.8 Biotin carboxylase compare
Psest_4084 -3.3 -17.9 oxaloacetate decarboxylase alpha subunit compare
Psest_0327 -3.1 -8.5 Transcriptional regulator compare
Psest_0566 -3.0 -13.8 urea ABC transporter, permease component (from data) conserved
Psest_4086 -2.8 -13.9 Transcriptional regulator compare
Psest_2650 -2.8 -6.0 hypothetical protein compare
Psest_1772 -2.8 -5.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3129 -2.8 -2.0 tyrosine recombinase XerD compare
Psest_1540 -2.8 -3.1 biotin-dependent carboxylase uncharacterized domain compare
Psest_0567 -2.7 -16.4 urea ABC transporter, urea binding protein conserved
Psest_1505 -2.6 -2.9 Organic radical activating enzymes compare
Psest_1640 -2.5 -12.0 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3297 -2.5 -10.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3178 -2.4 -4.0 formyltetrahydrofolate deformylase compare
Psest_3338 -2.4 -2.6 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1473 -2.4 -8.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1496 -2.4 -2.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_2872 -2.4 -3.0 protein RecA compare
Psest_2104 -2.3 -2.7 IscR-regulated protein YhgI compare
Psest_1474 -2.3 -1.6 phosphoribosylaminoimidazole synthetase compare
Psest_0565 -2.3 -10.0 urea ABC transporter, permease protein UrtC conserved
Psest_3960 -2.3 -2.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1012 -2.3 -6.0 Signal transduction histidine kinase compare
Psest_1013 -2.2 -3.6 phosphoribosylamine--glycine ligase compare
Psest_3159 -2.2 -7.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0563 -2.2 -4.7 urea ABC transporter, ATP-binding protein UrtE compare
Psest_2333 -2.1 -1.5 Protein of unknown function (DUF3359). compare
Psest_2532 -2.1 -5.0 Uncharacterized protein conserved in bacteria compare
Psest_3212 -2.1 -5.4 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3998 -2.0 -7.0 glutamate--cysteine ligase compare
Psest_0393 -2.0 -8.8 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3351 -2.0 -8.3 peptide chain release factor 3 compare
Psest_0193 -2.0 -1.9 conserved hypothetical protein compare
Psest_1695 -1.9 -6.2 Tfp pilus assembly protein PilZ compare
Psest_2324 -1.9 -11.0 hypothetical protein compare
Psest_0398 -1.9 -9.0 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_2323 -1.9 -12.1 Uncharacterized protein conserved in archaea compare
Psest_0498 -1.9 -1.8 ribosome small subunit-dependent GTPase A compare
Psest_0546 -1.8 -2.7 hypothetical protein compare
Psest_2325 -1.8 -7.3 alpha-L-glutamate ligase-related protein compare
Psest_3962 -1.8 -2.4 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_3092 -1.8 -2.2 ribonuclease III, bacterial compare
Psest_2907 -1.7 -1.6 Protein of unknown function (DUF3618). compare
Psest_0442 -1.7 -3.8 ATPases of the AAA+ class compare
Psest_0212 -1.7 -2.7 exodeoxyribonuclease V, gamma subunit compare
Psest_0722 -1.7 -8.0 Predicted ATPase compare
Psest_1506 -1.6 -6.8 queuosine biosynthesis protein QueC compare
Psest_1488 -1.6 -11.9 outer membrane porin, OprD family. compare
Psest_2646 -1.6 -1.6 SOS regulatory protein LexA compare
Psest_2329 -1.6 -10.1 Transcriptional regulator compare
Psest_0489 -1.5 -1.0 phosphoserine phosphatase SerB compare
Psest_1679 -1.5 -1.4 ribonuclease, Rne/Rng family compare
Psest_3288 -1.5 -8.6 type IV-A pilus assembly ATPase PilB compare
Psest_3809 -1.5 -4.9 hypothetical protein compare
Psest_0297 -1.5 -4.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3777 -1.4 -3.3 diguanylate cyclase (GGDEF) domain compare
Psest_1260 -1.4 -5.8 type IV pilus biogenesis/stability protein PilW compare
Psest_2945 -1.4 -0.8 septum site-determining protein MinC compare
Psest_4044 -1.4 -3.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2809 -1.4 -2.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0491 -1.4 -7.3 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2001 -1.3 -1.2 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0300 -1.3 -5.6 Methyl-accepting chemotaxis protein compare
Psest_0559 -1.3 -5.1 Sortase and related acyltransferases compare
Psest_3810 -1.3 -1.2 orotate phosphoribosyltransferase compare
Psest_0411 -1.3 -6.5 biotin synthetase compare
Psest_3806 -1.3 -5.6 Phosphomannomutase compare
Psest_3884 -1.3 -1.3 Signal transduction histidine kinase compare
Psest_1037 -1.3 -1.5 acetolactate synthase, small subunit compare
Psest_3927 -1.3 -3.3 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_0175 -1.3 -6.2 Xaa-Pro aminopeptidase compare
Psest_0170 -1.3 -5.0 5,10-methenyltetrahydrofolate synthetase compare
Psest_1814 -1.3 -9.0 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0719 -1.3 -4.1 Uncharacterized protein conserved in bacteria compare
Psest_0259 -1.2 -1.3 cell division ATP-binding protein FtsE compare
Psest_3721 -1.2 -5.4 Malic enzyme compare
Psest_3449 -1.2 -2.4 DJ-1 family protein compare
Psest_1242 -1.2 -2.8 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0744 -1.2 -1.3 Uncharacterized conserved protein compare
Psest_4010 -1.2 -1.4 peroxiredoxin, OsmC subfamily compare
Psest_0951 -1.2 -6.6 FAD/FMN-containing dehydrogenases compare
Psest_2988 -1.2 -3.6 aspartate kinase, monofunctional class compare
Psest_2090 -1.2 -2.9 Protein of unknown function (DUF2970). compare
Psest_2079 -1.2 -7.6 Predicted permeases compare
Psest_1919 -1.2 -2.7 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_1543 -1.2 -3.4 Predicted transcription regulator, contains HTH domain (MarR family) compare
Psest_4005 -1.2 -4.7 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_3715 -1.1 -8.3 type IV pilus secretin (or competence protein) PilQ compare
Psest_4345 -1.1 -6.3 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_0097 -1.1 -2.5 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1163 -1.1 -3.6 diguanylate cyclase (GGDEF) domain compare
Psest_0415 -1.1 -3.3 dethiobiotin synthase compare
Psest_1812 -1.1 -5.6 pseudaminic acid CMP-transferase compare
Psest_2316 -1.1 -7.7 phosphoenolpyruvate synthase compare
Psest_1813 -1.1 -6.9 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_3720 -1.1 -8.7 penicillin-binding protein, 1A family compare
Psest_1282 -1.1 -1.5 Amidases related to nicotinamidase compare
Psest_3145 -1.1 -1.4 hypothetical protein compare
Psest_0955 -1.1 -3.3 D,L-lactate:H+ symporter (from data) compare
Psest_0412 -1.1 -6.6 8-amino-7-oxononanoate synthase compare
Psest_1167 -1.1 -1.2 hypothetical protein compare
Psest_3286 -1.1 -3.9 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_2605 -1.1 -1.6 transcriptional activator RfaH compare
Psest_0306 -1.1 -7.2 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_4083 -1.1 -7.2 Predicted permease compare
Psest_3447 -1.0 -1.6 Uncharacterized MobA-related protein compare
Psest_3719 -1.0 -6.0 type IV pilus assembly protein PilM compare
Psest_3375 -1.0 -5.5 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1518 -1.0 -2.2 tRNA_Ser_CGA compare
Psest_1241 -1.0 -3.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_0842 -1.0 -2.2 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_3456 -1.0 -1.8 RNA polymerase sigma factor, sigma-70 family compare
Psest_1837 -1.0 -3.9 Endoglucanase compare
Psest_3339 -1.0 -3.8 Signal transduction histidine kinase compare
Psest_0133 -1.0 -1.5 type VI secretion protein, VC_A0107 family compare
Psest_0334 -1.0 -2.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2530 -0.9 -3.7 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_2527 -0.9 -4.7 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3716 -0.9 -5.7 Tfp pilus assembly protein PilP compare
Psest_2293 -0.9 -1.2 hypothetical protein compare
Psest_4364 -0.9 -3.0 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_1070 -0.9 -3.7 Predicted membrane protein compare
Psest_1824 -0.9 -2.2 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_4078 -0.9 -1.6 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_4297 -0.9 -6.1 PAS domain S-box compare
Psest_4170 -0.9 -1.2 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_4393 -0.9 -3.7 Capsule polysaccharide export protein compare
Psest_0988 -0.9 -1.9 Protein of unknown function (DUF2845). compare
Psest_0691 -0.9 -5.1 ribonuclease R compare
Psest_4287 -0.9 -5.1 Predicted glutamine amidotransferases compare
Psest_3766 -0.9 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_3222 -0.9 -1.3 Putative threonine efflux protein compare
Psest_0296 -0.9 -4.3 glutathione synthetase, prokaryotic compare
Psest_4191 -0.9 -2.3 Transcriptional regulator compare
Psest_0673 -0.9 -3.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_2810 -0.9 -3.0 5'/3'-nucleotidase SurE compare
Psest_3042 -0.9 -0.8 Nitrate reductase cytochrome c-type subunit compare
Psest_0705 -0.9 -5.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2946 -0.9 -2.2 septum site-determining protein MinD compare
Psest_2561 -0.9 -1.0 hypothetical protein compare
Psest_2594 -0.9 -1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4064 -0.9 -2.4 Lactate dehydrogenase and related dehydrogenases compare
Psest_3767 -0.8 -2.5 tyrosine recombinase XerC compare
Psest_2758 -0.8 -2.4 Predicted transcriptional regulators compare
Psest_0024 -0.8 -5.1 LysM domain. compare
Psest_3718 -0.8 -4.0 Tfp pilus assembly protein PilN compare
Psest_1819 -0.8 -6.9 Nucleoside-diphosphate-sugar epimerases compare
Psest_0285 -0.8 -4.6 pilus retraction protein PilT compare
Psest_4219 -0.8 -1.4 DNA polymerase I compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source Parabanic Acid in Pseudomonas stutzeri RCH2

For nitrogen source Parabanic Acid across organisms