Experiment set13H20 for Pseudomonas stutzeri RCH2

Compare to:

Parabanic Acid nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Psest_2066 +1.7 5.1 ABC-type uncharacterized transport system, permease component compare
Psest_2260 +1.5 13.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1840 +1.5 14.6 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_1635 +1.5 13.5 Signal transduction histidine kinase compare
Psest_1660 +1.5 3.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0831 +1.3 2.2 hypothetical protein compare
Psest_0538 +1.3 12.3 Signal transduction histidine kinase compare
Psest_1179 +1.2 3.1 2-hydroxy-3-oxopropionate reductase compare
Psest_1661 +1.2 3.3 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2718 +1.2 2.5 hypothetical protein compare
Psest_2067 +1.1 2.2 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1657 +1.1 2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2613 +1.1 1.9 hypothetical protein compare
Psest_1656 +1.1 2.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2136 +1.0 7.6 Predicted homoserine dehydrogenase compare
Psest_0164 +1.0 1.0 Glutaredoxin, GrxC family compare
Psest_1725 +1.0 7.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3973 +1.0 2.2 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_3371 +1.0 6.0 type IV pilus modification protein PilV compare
Psest_0417 +1.0 3.7 Acyl-CoA dehydrogenases compare
Psest_0845 +1.0 1.1 hypothetical protein compare
Psest_4273 +1.0 5.7 Lysophospholipase compare
Psest_0568 +0.9 2.5 pseudouridine synthase compare
Psest_1491 +0.9 2.1 Cold shock proteins compare
Psest_0086 +0.9 3.3 hypothetical protein compare
Psest_1122 +0.9 7.3 putative adhesin (DUF1302) (from data) compare
Psest_1655 +0.9 3.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_4201 +0.9 1.8 general secretion pathway protein F compare
Psest_1924 +0.8 7.2 adhesin-associated MmpL efflux pump (from data) compare
Psest_0310 +0.8 3.2 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0487 +0.8 2.5 Uncharacterized protein conserved in bacteria compare
Psest_1974 +0.8 3.5 integration host factor, alpha subunit compare
Psest_0956 +0.8 5.8 Transcriptional regulators compare
Psest_3217 +0.8 7.9 PAS domain S-box compare
Psest_1731 +0.8 2.1 flagellar biosynthetic protein FliO compare
Psest_2240 +0.8 2.2 hypothetical protein compare
Psest_0993 +0.8 5.6 Glucose-6-phosphate isomerase compare
Psest_2122 +0.8 0.6 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2232 +0.8 6.6 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1510 +0.8 2.5 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3301 +0.8 1.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_3216 +0.8 7.2 diguanylate cyclase (GGDEF) domain compare
Psest_0592 +0.8 1.4 hypothetical protein compare
Psest_0192 +0.7 4.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3745 +0.7 2.4 Uncharacterized enzyme of heme biosynthesis compare
Psest_0716 +0.7 1.7 Protein of unknown function (DUF3094). compare
Psest_3937 +0.7 1.3 ATP-dependent protease HslVU, ATPase subunit compare
Psest_2288 +0.7 2.8 trigger factor compare
Psest_3373 +0.7 4.2 Tfp pilus assembly protein PilX compare
Psest_3850 +0.7 0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1737 +0.7 3.2 flagellar biosynthesis protein FlhA compare
Psest_1567 +0.7 2.4 Transcriptional regulator compare
Psest_3100 +0.7 3.0 RNA polymerase sigma factor RpoE compare
Psest_1805 +0.7 1.6 integration host factor, beta subunit compare
Psest_3372 +0.7 4.7 Tfp pilus assembly protein PilW compare
Psest_0717 +0.7 5.5 Protein of unknown function (DUF1631). compare
Psest_3048 +0.7 1.1 hypothetical protein compare
Psest_0857 +0.7 1.4 Membrane transporters of cations and cationic drugs compare
Psest_3400 +0.7 1.2 Copper resistance protein D. compare
Psest_1625 +0.7 2.9 hypothetical protein compare
Psest_1388 +0.7 1.7 Uncharacterized protein conserved in bacteria compare
Psest_4008 +0.6 5.3 PAS domain S-box compare
Psest_0457 +0.6 1.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1718 +0.6 2.5 flagellar hook-basal body complex protein FliE compare
Psest_3546 +0.6 1.1 Phosphatidylglycerophosphatase A and related proteins compare
Psest_4098 +0.6 2.0 Superfamily I DNA and RNA helicases compare
Psest_1626 +0.6 2.8 Predicted integral membrane protein compare
Psest_0020 +0.6 2.2 K+ transport systems, NAD-binding component compare
Psest_0119 +0.6 2.3 hypothetical protein compare
Psest_1721 +0.6 2.6 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_4256 +0.6 1.8 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1923 +0.6 2.8 adhesin-associated BNR repeat protein (from data) compare
Psest_1498 +0.6 0.7 tol-pal system-associated acyl-CoA thioesterase compare
Psest_1994 +0.6 1.7 Amidases related to nicotinamidase compare
Psest_2383 +0.6 4.2 Predicted transcriptional regulators compare
Psest_2752 +0.6 1.2 Uncharacterized protein conserved in bacteria compare
Psest_0066 +0.6 1.4 Protein of unknown function (DUF3060). compare
Psest_1734 +0.6 3.3 flagellar biosynthetic protein FliR compare
Psest_3191 +0.6 0.9 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_0057 +0.6 1.4 Predicted transcriptional regulators compare
Psest_4279 +0.6 3.7 Uncharacterized protein involved in response to NO compare
Psest_4307 +0.6 1.3 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_1176 +0.6 1.6 Urea transporter compare
Psest_3045 +0.6 1.3 Cold shock proteins compare
Psest_4220 +0.6 1.5 Protein of unknown function (DUF2782). compare
Psest_3354 +0.6 2.5 1-phosphofructokinase (EC 2.7.1.56) (from data) compare
Psest_1600 +0.6 1.5 hypothetical protein compare
Psest_3399 +0.6 0.7 Uncharacterized protein conserved in bacteria compare
Psest_3543 +0.6 2.2 hypothetical protein compare
Psest_3651 +0.6 1.7 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1566 +0.5 3.7 Cation/multidrug efflux pump compare
Psest_0652 +0.5 1.6 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_1801 +0.5 2.5 3-deoxy-7-phosphoheptulonate synthase, class II compare
Psest_2513 +0.5 2.1 Predicted membrane protein compare
Psest_0402 +0.5 1.8 glycosyltransferase, MGT family compare
Psest_0309 +0.5 0.6 RND family efflux transporter, MFP subunit compare
Psest_3518 +0.5 0.8 Transcriptional regulators compare
Psest_2981 +0.5 1.0 sodium pump decarboxylases, gamma subunit compare
Psest_2150 +0.5 0.8 DNA polymerase LigD, polymerase domain compare
Psest_1421 +0.5 2.0 Glutathione S-transferase compare
Psest_1008 +0.5 0.8 hypothetical protein compare
Psest_1870 +0.5 0.7 Transcriptional regulators compare
Psest_3991 +0.5 2.0 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_3156 +0.5 2.0 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3877 +0.5 3.1 Predicted membrane protein compare
Psest_0446 +0.5 3.5 hypothetical protein compare
Psest_3562 +0.5 1.3 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_3323 +0.5 2.4 ribonuclease, Rne/Rng family compare
Psest_2909 +0.5 2.2 hypothetical protein compare
Psest_2756 +0.5 0.9 hypothetical protein compare
Psest_0693 +0.5 4.8 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_2290 +0.5 1.9 MoxR-like ATPases compare
Psest_0040 +0.5 2.1 Protein of unknown function (DUF2934). compare
Psest_3895 +0.5 1.3 hypothetical protein compare
Psest_2510 +0.5 3.4 chromosome segregation protein SMC, common bacterial type compare
Psest_2726 +0.5 1.0 Rhodanese-related sulfurtransferase compare
Psest_4406 +0.5 0.8 hypothetical protein compare
Psest_4003 +0.5 2.7 TIGR00153 family protein compare
Psest_1231 +0.5 2.5 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_3554 +0.5 1.9 Uncharacterized protein conserved in bacteria compare
Psest_1723 +0.5 2.4 flagellar export protein FliJ compare
Psest_1149 +0.5 1.4 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_2775 +0.5 1.7 Glycerol-3-phosphate dehydrogenase compare
Psest_3013 +0.5 1.5 cobyrinic acid a,c-diamide synthase compare
Psest_0919 +0.5 1.4 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_2467 +0.5 3.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3779 +0.5 3.0 channel protein, hemolysin III family compare
Psest_3905 +0.5 2.1 formate dehydrogenase, alpha subunit, archaeal-type compare
Psest_0408 +0.5 1.9 Protein involved in catabolism of external DNA compare
Psest_1643 +0.5 0.4 hypothetical protein compare
Psest_2308 +0.5 0.7 Predicted Fe-S protein compare
Psest_0064 +0.5 1.5 Transcriptional regulator compare
Psest_0678 +0.5 1.4 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_3832 +0.5 1.1 hypothetical protein compare
Psest_4140 +0.5 3.1 Acyl-CoA dehydrogenases compare
Psest_2617 +0.5 1.8 Flp pilus assembly protein TadC compare
Psest_4108 +0.5 2.1 seryl-tRNA(sec) selenium transferase compare
Psest_0485 +0.5 1.2 clan AA aspartic protease, TIGR02281 family compare
Psest_2634 +0.5 1.7 glycine betaine aldehyde dehydrogenase compare
Psest_2772 +0.5 2.4 MIP family channel proteins compare
Psest_3533 +0.5 1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1185 +0.5 1.9 heavy metal response regulator compare
Psest_2973 +0.5 2.4 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_0299 +0.5 1.1 Chemotaxis signal transduction protein compare
Psest_4154 +0.5 1.5 flagella basal body P-ring formation protein FlgA compare
Psest_3754 +0.5 1.2 Uncharacterized protein involved in response to NO compare
Psest_1067 +0.5 1.8 hypothetical protein compare
Psest_4258 +0.5 1.1 ABC-type uncharacterized transport system, auxiliary component compare
Psest_1016 +0.5 2.2 putative TIM-barrel protein, nifR3 family compare
Psest_2664 +0.5 2.2 tripartite ATP-independent periplasmic transporter solute receptor, DctP family compare
Psest_1719 +0.5 2.3 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_4082 +0.5 1.3 hypothetical protein compare
Psest_3789 +0.5 1.6 Uncharacterized protein containing double-stranded beta helix domain compare
Psest_3520 +0.5 1.8 Short chain fatty acids transporter compare
Psest_3395 +0.5 0.7 hypothetical protein compare
Psest_0311 +0.5 2.3 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1791 +0.5 1.5 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_2046 +0.5 1.2 hypothetical protein compare
Psest_3979 +0.4 0.5 Fructose-2,6-bisphosphatase compare
Psest_4403 +0.4 2.7 hypothetical protein compare
Psest_3507 +0.4 1.5 FOG: EAL domain compare
Psest_0727 +0.4 2.0 Methyl-accepting chemotaxis protein compare
Psest_0788 +0.4 2.7 Uncharacterized conserved protein compare
Psest_0106 +0.4 2.3 malonate decarboxylase, gamma subunit compare
Psest_2541 +0.4 1.8 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3433 +0.4 2.2 ATP-binding cassette protein, ChvD family compare
Psest_2447 +0.4 1.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2950 +0.4 2.0 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Psest_4382 +0.4 3.8 hypothetical protein compare
Psest_2961 +0.4 2.0 Flagellar basal-body P-ring protein compare
Psest_1427 +0.4 2.1 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_3197 +0.4 1.3 hypothetical protein compare
Psest_4278 +0.4 2.0 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_3078 +0.4 2.5 L-proline:Na+ symporter (from data) compare
Psest_1659 +0.4 1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_4142 +0.4 0.8 hypothetical protein compare
Psest_0708 +0.4 0.8 outer membrane assembly lipoprotein YfiO compare
Psest_3659 +0.4 1.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0038 +0.4 1.8 hypothetical protein compare
Psest_1218 +0.4 2.0 Predicted endonuclease containing a URI domain compare
Psest_3128 +0.4 1.8 Protein-disulfide isomerase compare
Psest_3192 +0.4 2.1 diguanylate cyclase (GGDEF) domain compare
Psest_1187 +0.4 2.3 exodeoxyribonuclease III compare
Psest_2048 +0.4 1.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3207 +0.4 1.5 HopJ type III effector protein. compare
Psest_1720 +0.4 2.6 flagellar motor switch protein FliG compare
Psest_3653 +0.4 2.1 4-aminobutyrate aminotransferase, prokaryotic type compare
Psest_1513 +0.4 1.8 Peroxiredoxin compare
Psest_2585 +0.4 0.4 pseudouridylate synthase I compare
Psest_3122 +0.4 2.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1214 +0.4 1.3 Cytosine deaminase and related metal-dependent hydrolases compare
Psest_1532 +0.4 1.4 DNA recombination-dependent growth factor C compare
Psest_4168 +0.4 1.9 Flagellar FliJ protein. compare
Psest_3105 +0.4 2.6 Predicted signal transduction protein compare
Psest_0332 +0.4 2.6 Membrane-bound lysozyme-inhibitor of c-type lysozyme. compare
Psest_4271 +0.4 1.5 Predicted proline hydroxylase compare
Psest_3127 +0.4 1.6 Uncharacterized conserved protein compare
Psest_1376 +0.4 2.4 hypothetical protein compare
Psest_0759 +0.4 0.8 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_3967 +0.4 2.2 Alcohol dehydrogenase, class IV compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source Parabanic Acid in Pseudomonas stutzeri RCH2

For nitrogen source Parabanic Acid across organisms