Experiment set13H18 for Pseudomonas stutzeri RCH2

Compare to:

Putrescine Dihydrochloride nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Psest_3937 +2.5 2.3 ATP-dependent protease HslVU, ATPase subunit compare
Psest_2766 +2.2 3.0 hypothetical protein compare
Psest_2260 +1.9 17.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1840 +1.9 18.8 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_1635 +1.9 17.5 Signal transduction histidine kinase compare
Psest_1725 +1.9 12.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2293 +1.8 2.8 hypothetical protein compare
Psest_3100 +1.8 7.4 RNA polymerase sigma factor RpoE compare
Psest_4177 +1.7 2.8 flagellar biosynthetic protein FliP compare
Psest_2066 +1.6 1.9 ABC-type uncharacterized transport system, permease component compare
Psest_0538 +1.6 15.3 Signal transduction histidine kinase compare
Psest_2136 +1.5 9.5 Predicted homoserine dehydrogenase compare
Psest_1122 +1.5 12.0 putative adhesin (DUF1302) (from data) compare
Psest_1657 +1.5 2.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2585 +1.4 1.5 pseudouridylate synthase I compare
Psest_0346 +1.4 4.3 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_3031 +1.3 1.0 hypothetical protein compare
Psest_1656 +1.3 2.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2101 +1.3 1.8 hypothetical protein compare
Psest_1924 +1.2 10.7 adhesin-associated MmpL efflux pump (from data) compare
Psest_1230 +1.2 1.7 Uncharacterized protein conserved in bacteria compare
Psest_0520 +1.2 1.4 hypothetical protein compare
Psest_4201 +1.1 1.5 general secretion pathway protein F compare
Psest_3395 +1.1 1.4 hypothetical protein compare
Psest_0389 +1.0 2.3 hypothetical protein compare
Psest_2975 +1.0 1.6 tRNA_Arg_CCT compare
Psest_4082 +1.0 1.8 hypothetical protein compare
Psest_2088 +1.0 0.7 Uncharacterized protein conserved in bacteria compare
Psest_2122 +1.0 1.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1923 +1.0 5.0 adhesin-associated BNR repeat protein (from data) compare
Psest_0857 +1.0 1.2 Membrane transporters of cations and cationic drugs compare
Psest_2726 +1.0 1.7 Rhodanese-related sulfurtransferase compare
Psest_1056 +1.0 1.6 2-isopropylmalate synthase, bacterial type compare
Psest_1660 +1.0 1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0660 +1.0 2.0 Methyl-accepting chemotaxis protein compare
Psest_2744 +1.0 1.6 Uncharacterized conserved protein compare
Psest_0487 +1.0 3.3 Uncharacterized protein conserved in bacteria compare
Psest_1598 +1.0 2.3 heavy metal response regulator compare
Psest_2500 +0.9 1.7 hypothetical protein compare
Psest_1562 +0.9 1.4 Uncharacterized protein conserved in bacteria compare
Psest_4273 +0.9 5.4 Lysophospholipase compare
Psest_1783 +0.9 2.0 Predicted transporter component compare
Psest_0511 +0.9 1.5 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_1951 +0.9 1.3 Uncharacterized protein conserved in bacteria compare
Psest_3413 +0.9 1.2 hypothetical protein compare
Psest_1686 +0.9 3.8 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2733 +0.9 2.0 Uncharacterized protein conserved in bacteria (DUF2188). compare
Psest_3812 +0.9 2.4 Uncharacterized protein conserved in bacteria compare
Psest_2072 +0.9 4.4 Methyltransferase domain. compare
Psest_3002 +0.9 0.9 Putative translation initiation inhibitor, yjgF family compare
Psest_1532 +0.9 2.2 DNA recombination-dependent growth factor C compare
Psest_3192 +0.9 4.7 diguanylate cyclase (GGDEF) domain compare
Psest_1117 +0.9 1.8 Lipid A 3-O-deacylase (PagL). compare
Psest_3546 +0.9 0.9 Phosphatidylglycerophosphatase A and related proteins compare
Psest_2148 +0.8 1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2634 +0.8 2.7 glycine betaine aldehyde dehydrogenase compare
Psest_1997 +0.8 1.3 6-phosphogluconolactonase compare
Psest_0414 +0.8 2.1 biotin biosynthesis protein BioC compare
Psest_0227 +0.8 1.8 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_1305 +0.8 1.3 Heat shock protein compare
Psest_0312 +0.8 3.8 Superfamily II DNA and RNA helicases compare
Psest_1625 +0.8 1.7 hypothetical protein compare
Psest_2114 +0.8 2.8 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_4307 +0.8 2.7 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_3200 +0.8 2.3 Uncharacterized protein conserved in bacteria compare
Psest_2407 +0.8 1.4 nitrite reductase [NAD(P)H], small subunit compare
Psest_1661 +0.8 1.5 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2370 +0.8 1.2 Protein of unknown function (DUF1652). compare
Psest_2752 +0.8 2.0 Uncharacterized protein conserved in bacteria compare
Psest_1878 +0.8 1.1 Uncharacterized protein conserved in bacteria compare
Psest_0095 +0.8 1.9 phosphonate C-P lyase system protein PhnH compare
Psest_0575 +0.8 0.6 HrpA-like helicases compare
Psest_3244 +0.8 1.0 Protein of unknown function (DUF2726). compare
Psest_1805 +0.8 1.8 integration host factor, beta subunit compare
Psest_3513 +0.8 2.8 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) compare
Psest_0725 +0.7 1.4 Negative regulator of beta-lactamase expression compare
Psest_3664 +0.7 1.0 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2918 +0.7 3.0 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) compare
Psest_1729 +0.7 2.0 flagellar motor switch protein FliM compare
Psest_0842 +0.7 1.1 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_0987 +0.7 1.8 Predicted periplasmic or secreted lipoprotein compare
Psest_0446 +0.7 3.3 hypothetical protein compare
Psest_3702 +0.7 2.0 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase compare
Psest_0855 +0.7 2.0 NAD-dependent aldehyde dehydrogenases compare
Psest_1893 +0.7 2.7 glucokinase, proteobacterial type compare
Psest_1259 +0.7 2.6 23S rRNA m2A2503 methyltransferase compare
Psest_1902 +0.7 3.0 hypothetical protein compare
Psest_4121 +0.7 2.1 Zonula occludens toxin compare
Psest_2383 +0.7 3.8 Predicted transcriptional regulators compare
Psest_1206 +0.7 1.5 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1217 +0.7 3.6 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_4128 +0.7 1.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3237 +0.7 1.1 hypothetical protein compare
Psest_4079 +0.7 2.3 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_4161 +0.7 1.5 Flagellar basal body-associated protein compare
Psest_2981 +0.7 1.4 sodium pump decarboxylases, gamma subunit compare
Psest_0845 +0.7 0.5 hypothetical protein compare
Psest_1655 +0.7 3.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1945 +0.7 1.6 hypothetical protein compare
Psest_2604 +0.7 3.3 WbqC-like protein family. compare
Psest_4316 +0.7 1.8 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_2873 +0.7 2.3 competence/damage-inducible protein CinA C-terminal domain compare
Psest_2525 +0.7 1.2 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_0359 +0.7 1.8 Transcriptional regulators compare
Psest_3701 +0.7 1.7 3-oxoacyl-(acyl-carrier-protein) synthase compare
Psest_1626 +0.7 2.5 Predicted integral membrane protein compare
Psest_1723 +0.7 2.3 flagellar export protein FliJ compare
Psest_1261 +0.7 2.4 Uncharacterized protein conserved in bacteria compare
Psest_2384 +0.7 1.4 Uncharacterized protein conserved in bacteria compare
Psest_3824 +0.7 1.4 Predicted membrane protein compare
Psest_3662 +0.7 0.9 DnaJ-domain-containing proteins 1 compare
Psest_4172 +0.7 2.0 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_1111 +0.7 1.5 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_4071 +0.6 2.7 4-hydroxyphenylpyruvate dioxygenase and related hemolysins compare
Psest_0959 +0.6 0.9 Uncharacterized protein conserved in bacteria compare
Psest_2238 +0.6 1.0 hypothetical protein compare
Psest_2594 +0.6 1.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4276 +0.6 1.5 hypothetical protein compare
Psest_1417 +0.6 0.9 hypothetical protein compare
Psest_1367 +0.6 1.9 hypothetical protein compare
Psest_2351 +0.6 5.0 urea carboxylase compare
Psest_2225 +0.6 0.7 Diacylglycerol kinase compare
Psest_0915 +0.6 1.9 hypothetical protein compare
Psest_0790 +0.6 1.3 Uncharacterized protein conserved in bacteria compare
Psest_0259 +0.6 0.5 cell division ATP-binding protein FtsE compare
Psest_1026 +0.6 1.3 Uncharacterized iron-regulated protein compare
Psest_1421 +0.6 2.1 Glutathione S-transferase compare
Psest_3934 +0.6 0.9 rRNA methylase, putative, group 2 compare
Psest_2058 +0.6 2.4 Zn-dependent hydrolases, including glyoxylases compare
Psest_0558 +0.6 0.6 urease, beta subunit compare
Psest_1732 +0.6 1.4 flagellar biosynthetic protein FliP compare
Psest_1349 +0.6 1.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2341 +0.6 1.9 Lipase chaperone compare
Psest_1718 +0.6 1.9 flagellar hook-basal body complex protein FliE compare
Psest_3064 +0.6 1.4 hypothetical protein compare
Psest_3207 +0.6 1.7 HopJ type III effector protein. compare
Psest_3841 +0.6 3.3 D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_1144 +0.6 1.3 AmpG-related permease compare
Psest_1457 +0.6 1.2 FOG: Ankyrin repeat compare
Psest_4241 +0.6 2.6 hypothetical protein compare
Psest_4051 +0.6 1.0 molybdenum-pterin binding domain compare
Psest_2513 +0.6 1.5 Predicted membrane protein compare
Psest_4346 +0.6 1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4006 +0.6 1.8 hypothetical protein compare
Psest_3372 +0.6 2.5 Tfp pilus assembly protein PilW compare
Psest_1040 +0.6 2.9 Sulfite oxidase and related enzymes compare
Psest_1348 +0.6 2.6 putative allantoin catabolism protein compare
Psest_2266 +0.6 0.8 hypothetical protein compare
Psest_1187 +0.6 3.0 exodeoxyribonuclease III compare
Psest_0294 +0.6 1.1 Putative transcriptional regulator compare
Psest_1270 +0.6 1.6 hypothetical protein compare
Psest_0853 +0.6 1.0 6-phosphogluconolactonase compare
Psest_3239 +0.6 1.2 hypothetical protein compare
Psest_1318 +0.6 1.8 ABC-type phosphate/phosphonate transport system, permease component compare
Psest_0889 +0.6 1.5 Lactoylglutathione lyase and related lyases compare
Psest_3374 +0.6 3.1 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_3962 +0.6 0.3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_3527 +0.6 1.6 Pseudouridylate synthases, 23S RNA-specific compare
Psest_3270 +0.6 0.7 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_3216 +0.6 5.2 diguanylate cyclase (GGDEF) domain compare
Psest_1171 +0.6 1.9 nicotinate phosphoribosyltransferase compare
Psest_2576 +0.6 2.1 hypothetical protein compare
Psest_0344 +0.6 2.3 Superfamily II DNA and RNA helicases compare
Psest_3476 +0.6 0.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1118 +0.6 0.6 Predicted Fe-S-cluster oxidoreductase compare
Psest_1677 +0.6 1.1 Protein-tyrosine-phosphatase compare
Psest_2600 +0.6 3.1 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis compare
Psest_1909 +0.5 1.3 Phosphohistidine phosphatase SixA compare
Psest_3146 +0.5 0.7 hypothetical protein compare
Psest_3215 +0.5 1.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_1860 +0.5 1.1 Uncharacterized conserved protein compare
Psest_3296 +0.5 1.1 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_3156 +0.5 1.9 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_2596 +0.5 1.6 hypothetical protein compare
Psest_0765 +0.5 1.5 hypothetical protein compare
Psest_1491 +0.5 1.0 Cold shock proteins compare
Psest_4178 +0.5 0.7 hypothetical protein compare
Psest_1016 +0.5 1.5 putative TIM-barrel protein, nifR3 family compare
Psest_2743 +0.5 1.6 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_0298 +0.5 1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0744 +0.5 0.6 Uncharacterized conserved protein compare
Psest_0115 +0.5 0.8 Predicted integral membrane protein compare
Psest_1158 +0.5 3.3 Predicted thiol oxidoreductase compare
Psest_3399 +0.5 0.7 Uncharacterized protein conserved in bacteria compare
Psest_0079 +0.5 1.9 hypothetical protein compare
Psest_0061 +0.5 1.6 hypothetical protein compare
Psest_3908 +0.5 0.8 Cytochrome c553 compare
Psest_0105 +0.5 2.0 malonate decarboxylase, beta subunit compare
Psest_3742 +0.5 1.3 hypothetical protein compare
Psest_3373 +0.5 2.5 Tfp pilus assembly protein PilX compare
Psest_2463 +0.5 1.5 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_3357 +0.5 1.1 Predicted pyrophosphatase compare
Psest_4219 +0.5 1.0 DNA polymerase I compare
Psest_1899 +0.5 2.0 ABC-type sugar transport systems, ATPase components compare
Psest_3217 +0.5 4.9 PAS domain S-box compare
Psest_2909 +0.5 1.3 hypothetical protein compare
Psest_3495 +0.5 1.6 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2030 +0.5 1.4 leucyl/phenylalanyl-tRNA--protein transferase compare
Psest_2729 +0.5 2.0 Signal transduction histidine kinase compare
Psest_4004 +0.5 2.4 Uncharacterized conserved protein compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source Putrescine Dihydrochloride in Pseudomonas stutzeri RCH2

For nitrogen source Putrescine Dihydrochloride across organisms