Experiment set13H17 for Pseudomonas stutzeri RCH2

Compare to:

Putrescine Dihydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3650 -5.1 -16.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3648 -5.0 -9.8 anthranilate phosphoribosyltransferase compare
Psest_3298 -4.8 -14.2 histidinol dehydrogenase compare
Psest_3931 -4.8 -6.9 Signal transduction histidine kinase, nitrogen specific compare
Psest_3647 -4.8 -7.9 Indole-3-glycerol phosphate synthase compare
Psest_0155 -4.7 -8.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3317 -4.6 -7.2 Phosphotransferase System HPr (HPr) Family compare
Psest_3649 -4.6 -12.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0063 -4.4 -13.3 tryptophan synthase, beta subunit compare
Psest_0152 -4.4 -9.0 Imidazoleglycerol-phosphate dehydratase compare
Psest_3862 -4.3 -19.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2584 -4.3 -8.1 Phosphoribosylanthranilate isomerase compare
Psest_0279 -4.3 -7.5 methionine biosynthesis protein MetW compare
Psest_3943 -4.2 -6.1 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0153 -4.1 -16.4 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3864 -4.0 -16.9 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0062 -4.0 -13.1 tryptophan synthase, alpha subunit compare
Psest_2591 -3.9 -3.7 3-isopropylmalate dehydratase, large subunit compare
Psest_3299 -3.9 -12.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0508 -3.9 -10.4 gamma-glutamyl phosphate reductase compare
Psest_3711 -3.7 -20.5 Glutamate synthase domain 2 compare
Psest_0687 -3.7 -12.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0313 -3.6 -9.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4287 -3.6 -7.9 Predicted glutamine amidotransferases compare
Psest_2578 -3.6 -14.1 O-succinylhomoserine sulfhydrylase compare
Psest_3384 -3.6 -12.0 glutamate 5-kinase compare
Psest_0280 -3.5 -15.3 homoserine O-acetyltransferase compare
Psest_3710 -3.4 -17.9 glutamate synthase small subunit family protein, proteobacterial compare
Psest_4305 -3.4 -10.0 NAD-dependent aldehyde dehydrogenases conserved
Psest_3866 -3.3 -16.4 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2589 -3.2 -10.4 3-isopropylmalate dehydrogenase compare
Psest_0325 -3.2 -13.0 Putative threonine efflux protein compare
Psest_4282 -3.1 -11.5 spermidine/putrescine ABC transporter ATP-binding subunit conserved
Psest_0327 -3.1 -9.6 Transcriptional regulator compare
Psest_3932 -3.1 -8.4 nitrogen regulation protein NR(I) compare
Psest_0953 -3.0 -11.3 iron-sulfur cluster-binding protein compare
Psest_4281 -2.9 -14.3 ABC-type spermidine/putrescine transport system, permease component I conserved
Psest_2579 -2.8 -6.7 amidophosphoribosyltransferase compare
Psest_4280 -2.7 -3.9 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_0954 -2.7 -11.4 Fe-S oxidoreductase compare
Psest_0326 -2.5 -10.9 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0952 -2.5 -3.3 Uncharacterized conserved protein compare
Psest_2590 -2.4 -1.3 3-isopropylmalate dehydratase, small subunit compare
Psest_3944 -2.4 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_4284 -2.3 -12.2 Spermidine/putrescine-binding periplasmic protein conserved
Psest_3159 -2.2 -4.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2532 -2.2 -4.2 Uncharacterized protein conserved in bacteria compare
Psest_0212 -2.2 -3.1 exodeoxyribonuclease V, gamma subunit compare
Psest_4288 -2.2 -9.9 Glutamate--putrescine ligase (EC 6.3.1.11) (from data) conserved
Psest_1505 -2.1 -1.9 Organic radical activating enzymes compare
Psest_0737 -2.1 -1.2 Cu(I)-responsive transcriptional regulator compare
Psest_0191 -2.1 -1.1 PAS domain S-box compare
Psest_1295 -2.1 -7.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1474 -1.9 -2.6 phosphoribosylaminoimidazole synthetase compare
Psest_3129 -1.9 -1.3 tyrosine recombinase XerD compare
Psest_1013 -1.9 -2.5 phosphoribosylamine--glycine ligase compare
Psest_3399 -1.8 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1496 -1.8 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_3177 -1.7 -1.6 hypothetical protein compare
Psest_3395 -1.7 -1.0 hypothetical protein compare
Psest_2845 -1.7 -6.7 [Protein-PII] uridylyltransferase compare
Psest_1167 -1.7 -1.2 hypothetical protein compare
Psest_4078 -1.6 -1.9 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3670 -1.6 -9.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_0277 -1.6 -1.0 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0520 -1.6 -0.9 hypothetical protein compare
Psest_4201 -1.6 -1.9 general secretion pathway protein F compare
Psest_3338 -1.6 -1.7 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_4325 -1.5 -2.5 hypothetical protein compare
Psest_3178 -1.4 -3.3 formyltetrahydrofolate deformylase compare
Psest_2158 -1.4 -9.2 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_3002 -1.4 -2.0 Putative translation initiation inhibitor, yjgF family compare
Psest_0164 -1.4 -0.6 Glutaredoxin, GrxC family compare
Psest_1640 -1.4 -7.6 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_2566 -1.4 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3351 -1.4 -5.5 peptide chain release factor 3 compare
Psest_1741 -1.4 -2.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3458 -1.3 -3.0 hypothetical protein compare
Psest_2944 -1.3 -1.5 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_1163 -1.3 -3.6 diguanylate cyclase (GGDEF) domain compare
Psest_2067 -1.3 -1.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2855 -1.3 -1.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_2712 -1.3 -3.5 Surface lipoprotein compare
Psest_3793 -1.3 -4.8 D-alanine dehydrogenase (EC 1.4.99.-) (from data) compare
Psest_4196 -1.3 -4.3 Type II secretory pathway, component PulK compare
Psest_2714 -1.3 -1.6 7-cyano-7-deazaguanine reductase compare
Psest_0141 -1.3 -4.5 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_2104 -1.2 -1.8 IscR-regulated protein YhgI compare
Psest_0719 -1.2 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_4310 -1.2 -1.5 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3910 -1.2 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_4128 -1.2 -1.4 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2766 -1.2 -0.9 hypothetical protein compare
Psest_4286 -1.2 -7.1 Glutamine synthetase conserved
Psest_2907 -1.2 -1.1 Protein of unknown function (DUF3618). compare
Psest_2079 -1.2 -7.6 Predicted permeases compare
Psest_3113 -1.2 -1.7 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1366 -1.2 -1.1 hypothetical protein compare
Psest_2527 -1.2 -5.0 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4285 -1.2 -3.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase conserved
Psest_0692 -1.2 -1.4 rRNA methylase, putative, group 3 compare
Psest_3662 -1.1 -2.2 DnaJ-domain-containing proteins 1 compare
Psest_1006 -1.1 -4.7 dTDP-4-dehydrorhamnose reductase compare
Psest_3777 -1.1 -1.8 diguanylate cyclase (GGDEF) domain compare
Psest_4274 -1.1 -2.8 hypothetical protein compare
Psest_0442 -1.1 -2.6 ATPases of the AAA+ class compare
Psest_3818 -1.1 -3.1 endoribonuclease L-PSP, putative compare
Psest_2612 -1.1 -2.6 hypothetical protein compare
Psest_2809 -1.0 -1.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0734 -1.0 -2.2 RND family efflux transporter, MFP subunit compare
Psest_1888 -1.0 -0.8 Sua5/YciO/YrdC/YwlC family protein compare
Psest_2719 -1.0 -1.6 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1431 -1.0 -3.5 hypothetical protein compare
Psest_0489 -1.0 -1.0 phosphoserine phosphatase SerB compare
Psest_3305 -1.0 -4.3 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3565 -1.0 -1.1 hypothetical protein compare
Psest_0955 -1.0 -2.6 D,L-lactate:H+ symporter (from data) compare
Psest_3809 -1.0 -3.0 hypothetical protein compare
Psest_0511 -1.0 -1.1 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_2278 -1.0 -2.7 coenzyme PQQ biosynthesis protein PqqD compare
Psest_2123 -0.9 -1.6 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_2094 -0.9 -4.2 Predicted Fe-S-cluster redox enzyme compare
Psest_2648 -0.9 -0.9 hypothetical protein compare
Psest_3792 -0.9 -1.8 Putative translation initiation inhibitor, yjgF family compare
Psest_2150 -0.9 -1.8 DNA polymerase LigD, polymerase domain compare
Psest_1679 -0.9 -1.1 ribonuclease, Rne/Rng family compare
Psest_3185 -0.9 -1.4 MoxR-like ATPases compare
Psest_2872 -0.9 -1.2 protein RecA compare
Psest_0417 -0.9 -1.9 Acyl-CoA dehydrogenases compare
Psest_1204 -0.9 -1.5 Transcriptional regulators compare
Psest_1313 -0.9 -1.3 Uncharacterized conserved small protein compare
Psest_3531 -0.9 -0.8 Peptidase propeptide and YPEB domain. compare
Psest_2988 -0.9 -3.1 aspartate kinase, monofunctional class compare
Psest_2333 -0.9 -0.7 Protein of unknown function (DUF3359). compare
Psest_1613 -0.9 -3.1 hypothetical protein compare
Psest_3478 -0.9 -1.0 Cytochrome B561 compare
Psest_1813 -0.9 -5.0 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_4276 -0.9 -1.7 hypothetical protein compare
Psest_0367 -0.9 -1.5 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_3297 -0.9 -3.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_4001 -0.9 -2.7 acetylornithine deacetylase (ArgE) compare
Psest_3480 -0.9 -1.8 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1990 -0.9 -1.5 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_4005 -0.9 -2.1 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_2961 -0.9 -2.7 Flagellar basal-body P-ring protein compare
Psest_0485 -0.9 -2.2 clan AA aspartic protease, TIGR02281 family compare
Psest_2896 -0.9 -2.8 hypothetical protein compare
Psest_3377 -0.9 -0.6 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3070 -0.9 -1.1 3-oxoadipyl-CoA thiolase compare
Psest_0066 -0.8 -1.6 Protein of unknown function (DUF3060). compare
Psest_3519 -0.8 -1.2 Uncharacterized conserved protein compare
Psest_1812 -0.8 -4.6 pseudaminic acid CMP-transferase compare
Psest_3039 -0.8 -0.9 periplasmic nitrate reductase, NapE protein compare
Psest_1643 -0.8 -0.7 hypothetical protein compare
Psest_2798 -0.8 -1.6 Truncated hemoglobins compare
Psest_3810 -0.8 -0.8 orotate phosphoribosyltransferase compare
Psest_1473 -0.8 -2.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2557 -0.8 -1.4 Protein of unknown function (DUF2474). compare
Psest_0869 -0.8 -1.8 Acetyltransferase (isoleucine patch superfamily) compare
Psest_3307 -0.8 -3.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0922 -0.8 -1.9 alkylhydroperoxidase AhpD family core domain compare
Psest_4044 -0.8 -2.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1506 -0.8 -2.5 queuosine biosynthesis protein QueC compare
Psest_0551 -0.8 -2.9 PEP phosphonomutase and related enzymes compare
Psest_0601 -0.8 -1.1 hypothetical protein compare
Psest_2873 -0.8 -2.0 competence/damage-inducible protein CinA C-terminal domain compare
Psest_1522 -0.8 -1.5 hypothetical protein compare
Psest_1543 -0.8 -3.0 Predicted transcription regulator, contains HTH domain (MarR family) compare
Psest_0587 -0.8 -2.2 Domain of Unknown Function (DUF326). compare
Psest_2565 -0.8 -1.2 Transcriptional regulator compare
Psest_4084 -0.8 -4.5 oxaloacetate decarboxylase alpha subunit compare
Psest_2946 -0.8 -1.8 septum site-determining protein MinD compare
Psest_2369 -0.8 -2.1 Transcriptional regulator compare
Psest_3005 -0.7 -1.9 Fructose-2,6-bisphosphatase compare
Psest_2646 -0.7 -1.4 SOS regulatory protein LexA compare
Psest_1142 -0.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2483 -0.7 -2.4 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1318 -0.7 -3.5 ABC-type phosphate/phosphonate transport system, permease component compare
Psest_0309 -0.7 -0.6 RND family efflux transporter, MFP subunit compare
Psest_0691 -0.7 -3.9 ribonuclease R compare
Psest_1804 -0.7 -1.3 Superfamily II DNA and RNA helicases compare
Psest_2293 -0.7 -0.7 hypothetical protein compare
Psest_0115 -0.7 -0.8 Predicted integral membrane protein compare
Psest_1905 -0.7 -1.4 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_0248 -0.7 -3.3 Transcriptional regulator compare
Psest_3878 -0.7 -1.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0831 -0.7 -0.6 hypothetical protein compare
Psest_0334 -0.7 -1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3659 -0.7 -1.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3303 -0.7 -2.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3718 -0.7 -2.4 Tfp pilus assembly protein PilN compare
Psest_1282 -0.7 -1.4 Amidases related to nicotinamidase compare
Psest_1815 -0.7 -4.3 pseudaminic acid synthase compare
Psest_4289 -0.7 -3.0 Transcriptional regulator compare
Psest_1049 -0.7 -1.9 Uncharacterized paraquat-inducible protein A compare
Psest_2424 -0.7 -1.4 K+ transport systems, NAD-binding component compare
Psest_1054 -0.7 -2.8 Diaminopimelate decarboxylase compare
Psest_0172 -0.7 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_1293 -0.7 -1.0 VanZ like family. compare
Psest_2018 -0.7 -1.2 Uncharacterized conserved protein compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Putrescine Dihydrochloride in Pseudomonas stutzeri RCH2

For nitrogen source Putrescine Dihydrochloride across organisms