Experiment set13H14 for Pseudomonas stutzeri RCH2

Compare to:

L-Citrulline nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_2584 -3.9 -8.2 Phosphoribosylanthranilate isomerase compare
Psest_3649 -3.8 -11.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3862 -3.8 -17.1 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3317 -3.8 -6.0 Phosphotransferase System HPr (HPr) Family compare
Psest_3298 -3.6 -14.9 histidinol dehydrogenase compare
Psest_0952 -3.6 -3.5 Uncharacterized conserved protein compare
Psest_3710 -3.3 -18.5 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3650 -3.3 -15.2 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3648 -3.2 -8.1 anthranilate phosphoribosyltransferase compare
Psest_3960 -3.2 -1.7 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3932 -3.2 -6.3 nitrogen regulation protein NR(I) compare
Psest_3711 -3.2 -19.9 Glutamate synthase domain 2 compare
Psest_4287 -3.1 -6.6 Predicted glutamine amidotransferases compare
Psest_0959 -3.1 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_0153 -3.1 -14.7 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3338 -2.9 -1.3 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_4288 -2.7 -12.9 Glutamate--putrescine ligase (EC 6.3.1.11) (from data) compare
Psest_3647 -2.7 -6.7 Indole-3-glycerol phosphate synthase compare
Psest_0953 -2.7 -9.0 iron-sulfur cluster-binding protein compare
Psest_0152 -2.6 -6.0 Imidazoleglycerol-phosphate dehydratase compare
Psest_0062 -2.6 -12.0 tryptophan synthase, alpha subunit compare
Psest_0954 -2.6 -6.8 Fe-S oxidoreductase compare
Psest_3864 -2.5 -14.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0155 -2.5 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3299 -2.5 -11.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2104 -2.4 -1.6 IscR-regulated protein YhgI compare
Psest_3943 -2.4 -4.8 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3351 -2.4 -6.7 peptide chain release factor 3 compare
Psest_2590 -2.3 -1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_1805 -2.3 -2.5 integration host factor, beta subunit compare
Psest_0508 -2.3 -8.9 gamma-glutamyl phosphate reductase compare
Psest_2591 -2.2 -2.9 3-isopropylmalate dehydratase, large subunit compare
Psest_0725 -2.2 -2.3 Negative regulator of beta-lactamase expression compare
Psest_3297 -2.2 -9.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3496 -2.2 -2.1 Predicted metal-binding protein compare
Psest_3866 -2.2 -13.3 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3456 -2.2 -2.2 RNA polymerase sigma factor, sigma-70 family compare
Psest_2579 -2.2 -5.3 amidophosphoribosyltransferase compare
Psest_0498 -2.1 -1.3 ribosome small subunit-dependent GTPase A compare
Psest_1295 -2.1 -7.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0212 -2.1 -2.3 exodeoxyribonuclease V, gamma subunit compare
Psest_0687 -2.1 -8.3 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2589 -2.0 -9.3 3-isopropylmalate dehydrogenase compare
Psest_2981 -2.0 -2.3 sodium pump decarboxylases, gamma subunit compare
Psest_1006 -2.0 -6.7 dTDP-4-dehydrorhamnose reductase compare
Psest_1013 -1.9 -1.3 phosphoribosylamine--glycine ligase compare
Psest_4008 -1.9 -11.6 PAS domain S-box compare
Psest_2356 -1.9 -10.1 Fatty acid desaturase compare
Psest_0192 -1.9 -5.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0063 -1.9 -7.8 tryptophan synthase, beta subunit compare
Psest_0717 -1.8 -11.0 Protein of unknown function (DUF1631). compare
Psest_1292 -1.8 -8.2 monothiol glutaredoxin, Grx4 family compare
Psest_1640 -1.7 -9.7 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0280 -1.7 -10.4 homoserine O-acetyltransferase compare
Psest_1974 -1.7 -3.5 integration host factor, alpha subunit compare
Psest_0279 -1.7 -4.8 methionine biosynthesis protein MetW compare
Psest_2351 -1.7 -11.8 urea carboxylase compare
Psest_2946 -1.7 -3.1 septum site-determining protein MinD compare
Psest_0309 -1.7 -1.3 RND family efflux transporter, MFP subunit compare
Psest_1474 -1.7 -1.6 phosphoribosylaminoimidazole synthetase compare
Psest_0066 -1.6 -1.9 Protein of unknown function (DUF3060). compare
Psest_3304 -1.6 -4.7 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2349 -1.6 -5.8 urea carboxylase-associated protein 1 compare
Psest_2712 -1.6 -4.4 Surface lipoprotein compare
Psest_0759 -1.6 -1.5 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_3502 -1.6 -2.2 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_1643 -1.6 -1.1 hypothetical protein compare
Psest_0313 -1.6 -5.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3159 -1.6 -4.6 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2901 -1.6 -2.0 hypothetical protein compare
Psest_3554 -1.6 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_2578 -1.6 -7.9 O-succinylhomoserine sulfhydrylase compare
Psest_1884 -1.5 -2.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3550 -1.5 -2.3 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_2532 -1.5 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_1204 -1.5 -2.7 Transcriptional regulators compare
Psest_1661 -1.5 -1.7 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3692 -1.5 -3.3 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_2047 -1.5 -2.8 Signal transduction histidine kinase compare
Psest_3931 -1.4 -2.3 Signal transduction histidine kinase, nitrogen specific compare
Psest_1772 -1.4 -2.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3818 -1.4 -6.0 endoribonuclease L-PSP, putative compare
Psest_2333 -1.4 -0.9 Protein of unknown function (DUF3359). compare
Psest_1999 -1.4 -1.0 pseudouridine synthase compare
Psest_4126 -1.4 -1.7 Predicted peroxiredoxins compare
Psest_3458 -1.4 -2.7 hypothetical protein compare
Psest_1366 -1.4 -1.5 hypothetical protein compare
Psest_2585 -1.4 -0.7 pseudouridylate synthase I compare
Psest_0260 -1.4 -1.4 Cell division protein compare
Psest_2355 -1.4 -6.6 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_3732 -1.3 -4.9 polyphosphate kinase 1 compare
Psest_1354 -1.3 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0193 -1.3 -1.1 conserved hypothetical protein compare
Psest_1388 -1.3 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3543 -1.3 -1.7 hypothetical protein compare
Psest_3307 -1.3 -5.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1522 -1.3 -1.7 hypothetical protein compare
Psest_3480 -1.3 -2.1 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3767 -1.3 -2.8 tyrosine recombinase XerC compare
Psest_0191 -1.3 -0.6 PAS domain S-box compare
Psest_2809 -1.3 -2.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3366 -1.2 -9.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) compare
Psest_3896 -1.2 -2.6 arsenite-activated ATPase ArsA compare
Psest_3419 -1.2 -3.5 Predicted transcriptional regulators compare
Psest_3113 -1.2 -1.3 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2424 -1.2 -2.0 K+ transport systems, NAD-binding component compare
Psest_0722 -1.2 -4.9 Predicted ATPase compare
Psest_3237 -1.2 -1.1 hypothetical protein compare
Psest_1518 -1.2 -2.1 tRNA_Ser_CGA compare
Psest_0744 -1.1 -0.8 Uncharacterized conserved protein compare
Psest_2324 -1.1 -7.7 hypothetical protein compare
Psest_0346 -1.1 -1.6 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_1627 -1.1 -5.9 Superfamily II DNA and RNA helicases compare
Psest_2158 -1.1 -7.5 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_0869 -1.1 -1.8 Acetyltransferase (isoleucine patch superfamily) compare
Psest_1804 -1.1 -1.4 Superfamily II DNA and RNA helicases compare
Psest_3301 -1.1 -1.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_2325 -1.1 -5.8 alpha-L-glutamate ligase-related protein compare
Psest_2872 -1.1 -1.4 protein RecA compare
Psest_0402 -1.1 -2.4 glycosyltransferase, MGT family compare
Psest_0575 -1.1 -0.5 HrpA-like helicases compare
Psest_3114 -1.1 -4.2 electron transport complex, RnfABCDGE type, C subunit compare
Psest_1709 -1.1 -1.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_4183 -1.1 -1.6 PilZ domain. compare
Psest_2748 -1.1 -1.2 Transcriptional regulator compare
Psest_3222 -1.1 -2.0 Putative threonine efflux protein compare
Psest_2866 -1.1 -3.2 Uncharacterized conserved protein compare
Psest_0137 -1.1 -4.6 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_1506 -1.0 -2.8 queuosine biosynthesis protein QueC compare
Psest_4290 -1.0 -3.4 N-carbamoylputrescine amidase compare
Psest_0969 -1.0 -1.2 transcription elongation factor GreA compare
Psest_3145 -1.0 -0.7 hypothetical protein compare
Psest_0175 -1.0 -4.1 Xaa-Pro aminopeptidase compare
Psest_3316 -1.0 -3.7 Predicted P-loop-containing kinase compare
Psest_3236 -1.0 -2.1 hypothetical protein compare
Psest_4305 -1.0 -4.4 NAD-dependent aldehyde dehydrogenases compare
Psest_4393 -1.0 -3.3 Capsule polysaccharide export protein compare
Psest_0697 -1.0 -1.7 ribosomal protein L9 compare
Psest_3869 -1.0 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_0138 -1.0 -4.3 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3042 -1.0 -0.8 Nitrate reductase cytochrome c-type subunit compare
Psest_0401 -1.0 -1.7 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_2793 -1.0 -1.9 hypothetical protein compare
Psest_3936 -1.0 -2.5 ATP-dependent protease HslVU, peptidase subunit compare
Psest_2447 -1.0 -1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0408 -1.0 -2.5 Protein involved in catabolism of external DNA compare
Psest_3115 -1.0 -3.8 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0139 -0.9 -2.3 ABC-type histidine transport system, ATPase component compare
Psest_1037 -0.9 -1.3 acetolactate synthase, small subunit compare
Psest_3384 -0.9 -3.6 glutamate 5-kinase compare
Psest_0417 -0.9 -1.7 Acyl-CoA dehydrogenases compare
Psest_4151 -0.9 -1.4 Flagellar hook capping protein compare
Psest_2988 -0.9 -4.0 aspartate kinase, monofunctional class compare
Psest_3305 -0.9 -3.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2352 -0.9 -4.4 allophanate hydrolase compare
Psest_4276 -0.9 -2.3 hypothetical protein compare
Psest_4163 -0.9 -1.6 hypothetical protein compare
Psest_0487 -0.9 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_2628 -0.9 -1.7 Flp pilus assembly protein, protease CpaA compare
Psest_3938 -0.9 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_0312 -0.9 -2.8 Superfamily II DNA and RNA helicases compare
Psest_0489 -0.9 -0.6 phosphoserine phosphatase SerB compare
Psest_4186 -0.9 -3.3 Methylase of polypeptide chain release factors compare
Psest_0902 -0.9 -2.6 Predicted transcriptional regulators compare
Psest_2612 -0.9 -2.6 hypothetical protein compare
Psest_2726 -0.9 -1.1 Rhodanese-related sulfurtransferase compare
Psest_1920 -0.9 -0.6 Uncharacterized protein conserved in bacteria compare
Psest_0209 -0.9 -1.0 membrane protein AbrB duplication compare
Psest_1904 -0.9 -2.1 Arabinose efflux permease compare
Psest_2845 -0.9 -3.4 [Protein-PII] uridylyltransferase compare
Psest_4291 -0.9 -3.1 agmatine deiminase compare
Psest_1612 -0.9 -2.4 ABC-type multidrug transport system, ATPase component compare
Psest_1457 -0.8 -1.3 FOG: Ankyrin repeat compare
Psest_1773 -0.8 -3.1 methionine-R-sulfoxide reductase compare
Psest_1459 -0.8 -2.0 hypothetical protein compare
Psest_0457 -0.8 -1.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1796 -0.8 -1.8 Predicted NAD/FAD-dependent oxidoreductase compare
Psest_2539 -0.8 -1.8 adenine phosphoribosyltransferase compare
Psest_2944 -0.8 -0.8 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2719 -0.8 -0.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0243 -0.8 -0.7 hypothetical protein compare
Psest_1879 -0.8 -1.5 Trk-type K+ transport systems, membrane components compare
Psest_3792 -0.8 -1.6 Putative translation initiation inhibitor, yjgF family compare
Psest_4346 -0.8 -3.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2667 -0.8 -2.3 Uncharacterized protein involved in propionate catabolism compare
Psest_1163 -0.8 -1.6 diguanylate cyclase (GGDEF) domain compare
Psest_0133 -0.8 -0.8 type VI secretion protein, VC_A0107 family compare
Psest_0119 -0.8 -1.1 hypothetical protein compare
Psest_2084 -0.8 -2.3 Fructose-2,6-bisphosphatase compare
Psest_1540 -0.8 -1.0 biotin-dependent carboxylase uncharacterized domain compare
Psest_2240 -0.8 -1.1 hypothetical protein compare
Psest_3998 -0.8 -2.5 glutamate--cysteine ligase compare
Psest_1305 -0.8 -1.9 Heat shock protein compare
Psest_3177 -0.8 -0.9 hypothetical protein compare
Psest_0385 -0.8 -1.5 Conserved secreted protein compare
Psest_0136 -0.8 -4.5 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_1166 -0.8 -1.6 transcriptional regulator, ArgP family compare
Psest_2976 -0.8 -0.8 hypothetical protein compare
Psest_1980 -0.8 -2.1 Uncharacterized conserved protein compare
Psest_0785 -0.8 -1.9 Thioredoxin reductase compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source L-Citrulline in Pseudomonas stutzeri RCH2

For nitrogen source L-Citrulline across organisms