Experiment set13H14 for Pseudomonas stutzeri RCH2

Compare to:

L-Citrulline nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Psest_1840 +4.1 36.3 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_2066 +3.4 3.2 ABC-type uncharacterized transport system, permease component compare
Psest_2136 +3.0 23.4 Predicted homoserine dehydrogenase compare
Psest_1282 +2.2 3.5 Amidases related to nicotinamidase compare
Psest_4298 +2.0 2.6 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0061 +1.9 3.9 hypothetical protein compare
Psest_3100 +1.9 8.5 RNA polymerase sigma factor RpoE compare
Psest_2025 +1.8 2.9 cold shock domain protein CspD compare
Psest_0511 +1.5 1.8 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_2308 +1.5 1.9 Predicted Fe-S protein compare
Psest_1563 +1.5 1.6 Protein of unknown function (DUF548). compare
Psest_2232 +1.4 12.4 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3890 +1.4 2.7 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2446 +1.4 2.8 acetyl-CoA acetyltransferases compare
Psest_1725 +1.4 9.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2613 +1.4 1.3 hypothetical protein compare
Psest_3518 +1.3 1.6 Transcriptional regulators compare
Psest_2110 +1.3 3.0 hypothetical protein compare
Psest_0805 +1.3 4.5 hypothetical protein compare
Psest_0277 +1.3 1.9 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_4142 +1.3 2.3 hypothetical protein compare
Psest_2561 +1.2 1.6 hypothetical protein compare
Psest_0993 +1.2 9.1 Glucose-6-phosphate isomerase compare
Psest_2092 +1.2 1.9 hypothetical protein compare
Psest_3373 +1.2 3.9 Tfp pilus assembly protein PilX compare
Psest_3174 +1.2 9.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2088 +1.1 1.4 Uncharacterized protein conserved in bacteria compare
Psest_0998 +1.1 1.8 poly(A) polymerase compare
Psest_2604 +1.1 6.0 WbqC-like protein family. compare
Psest_0078 +1.1 1.8 hypothetical protein compare
Psest_3535 +1.1 2.1 hypothetical protein compare
Psest_3031 +1.1 0.8 hypothetical protein compare
Psest_2520 +1.0 1.3 Predicted SAM-dependent methyltransferase compare
Psest_1863 +1.0 2.3 hypothetical protein compare
Psest_3148 +1.0 1.3 hypothetical protein compare
Psest_2648 +1.0 1.7 hypothetical protein compare
Psest_1660 +1.0 1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2885 +1.0 1.2 Acyl carrier protein compare
Psest_1349 +1.0 2.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3395 +1.0 1.1 hypothetical protein compare
Psest_2150 +1.0 1.4 DNA polymerase LigD, polymerase domain compare
Psest_2015 +1.0 2.2 Type II secretory pathway, component PulD compare
Psest_2609 +0.9 7.0 Glycosyltransferase compare
Psest_1721 +0.9 2.2 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_0357 +0.9 2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1326 +0.9 1.9 Uncharacterized conserved protein compare
Psest_2608 +0.9 5.0 hypothetical protein compare
Psest_1951 +0.9 1.3 Uncharacterized protein conserved in bacteria compare
Psest_2786 +0.9 1.2 Domain of unknown function (DUF3597). compare
Psest_2756 +0.9 1.4 hypothetical protein compare
Psest_1617 +0.9 1.2 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_1444 +0.9 4.0 Curli production assembly/transport component CsgF. compare
Psest_2855 +0.9 1.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3780 +0.8 1.6 Transcriptional regulator compare
Psest_1718 +0.8 2.3 flagellar hook-basal body complex protein FliE compare
Psest_3819 +0.8 1.6 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0956 +0.8 4.2 Transcriptional regulators compare
Psest_2278 +0.8 1.3 coenzyme PQQ biosynthesis protein PqqD compare
Psest_3913 +0.8 1.3 hypothetical protein compare
Psest_3562 +0.8 1.0 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_2643 +0.8 1.9 Beta-glucosidase-related glycosidases compare
Psest_1635 +0.8 7.3 Signal transduction histidine kinase compare
Psest_1270 +0.8 1.5 hypothetical protein compare
Psest_0520 +0.8 0.8 hypothetical protein compare
Psest_1161 +0.8 1.5 E3 Ubiquitin ligase. compare
Psest_0708 +0.8 1.2 outer membrane assembly lipoprotein YfiO compare
Psest_1471 +0.8 2.5 Predicted membrane protein compare
Psest_2964 +0.8 2.4 flagellar basal-body rod protein FlgF compare
Psest_0299 +0.8 2.2 Chemotaxis signal transduction protein compare
Psest_2457 +0.8 2.0 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_1173 +0.8 2.1 hypothetical protein compare
Psest_3197 +0.8 2.5 hypothetical protein compare
Psest_4051 +0.8 2.0 molybdenum-pterin binding domain compare
Psest_0763 +0.8 2.8 Predicted membrane protein compare
Psest_3372 +0.8 3.7 Tfp pilus assembly protein PilW compare
Psest_1824 +0.8 1.4 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2607 +0.8 5.3 hypothetical protein compare
Psest_2892 +0.8 1.1 Transcriptional regulator compare
Psest_3806 +0.7 2.6 Phosphomannomutase compare
Psest_3838 +0.7 1.3 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_4043 +0.7 1.0 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3168 +0.7 1.2 Molybdopterin converting factor, large subunit compare
Psest_3371 +0.7 3.6 type IV pilus modification protein PilV compare
Psest_2624 +0.7 1.6 hypothetical protein compare
Psest_3752 +0.7 2.3 hypothetical protein compare
Psest_4108 +0.7 1.7 seryl-tRNA(sec) selenium transferase compare
Psest_1139 +0.7 2.0 PAS domain S-box compare
Psest_3155 +0.7 1.5 hypothetical protein compare
Psest_3507 +0.7 2.4 FOG: EAL domain compare
Psest_2850 +0.7 0.7 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3449 +0.7 1.4 DJ-1 family protein compare
Psest_1765 +0.7 2.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4310 +0.7 1.3 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1783 +0.7 1.1 Predicted transporter component compare
Psest_0526 +0.7 1.3 hypothetical protein compare
Psest_1175 +0.7 2.6 hypothetical protein compare
Psest_1737 +0.7 2.6 flagellar biosynthesis protein FlhA compare
Psest_0297 +0.7 1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4102 +0.7 1.6 peroxiredoxin, Ohr subfamily compare
Psest_4067 +0.7 1.4 Predicted membrane protein compare
Psest_4280 +0.7 1.6 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_1029 +0.7 1.2 Regulator of competence-specific genes compare
Psest_0740 +0.7 1.3 Transcriptional regulator compare
Psest_1601 +0.7 1.0 Signal transduction histidine kinase compare
Psest_1723 +0.7 2.7 flagellar export protein FliJ compare
Psest_3084 +0.7 0.7 methyltransferase, putative compare
Psest_2766 +0.7 0.7 hypothetical protein compare
Psest_1952 +0.7 1.7 hypothetical protein compare
Psest_2260 +0.7 5.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4278 +0.7 1.3 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_1392 +0.7 1.7 ABC-type uncharacterized transport systems, ATPase components compare
Psest_1551 +0.7 1.5 Integral membrane protein, interacts with FtsH compare
Psest_2758 +0.7 1.5 Predicted transcriptional regulators compare
Psest_3861 +0.7 2.1 Uncharacterized conserved protein compare
Psest_2678 +0.7 2.0 Predicted protein-disulfide isomerase compare
Psest_3749 +0.7 3.5 Response regulator of the LytR/AlgR family compare
Psest_1538 +0.7 1.5 Uncharacterized protein conserved in bacteria compare
Psest_1445 +0.6 2.4 Curli assembly protein CsgE. compare
Psest_2961 +0.6 2.0 Flagellar basal-body P-ring protein compare
Psest_3287 +0.6 2.5 Type II secretory pathway, component PulF compare
Psest_3717 +0.6 2.2 Tfp pilus assembly protein PilO compare
Psest_1524 +0.6 1.4 Sel1 repeat. compare
Psest_3824 +0.6 1.8 Predicted membrane protein compare
Psest_1985 +0.6 1.6 histidinol-phosphate aminotransferase compare
Psest_2602 +0.6 2.7 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0845 +0.6 0.5 hypothetical protein compare
Psest_2358 +0.6 1.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2675 +0.6 2.7 Predicted membrane-bound metal-dependent hydrolases compare
Psest_3881 +0.6 0.9 hypothetical protein compare
Psest_1135 +0.6 2.7 Protein of unknown function (DUF3182). compare
Psest_3719 +0.6 3.4 type IV pilus assembly protein PilM compare
Psest_3853 +0.6 1.6 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_1318 +0.6 1.5 ABC-type phosphate/phosphonate transport system, permease component compare
Psest_2600 +0.6 3.3 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis compare
Psest_1293 +0.6 0.7 VanZ like family. compare
Psest_1733 +0.6 1.9 flagellar biosynthetic protein FliQ compare
Psest_1819 +0.6 5.2 Nucleoside-diphosphate-sugar epimerases compare
Psest_1149 +0.6 1.7 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_4221 +0.6 1.2 homoserine kinase, Neisseria type compare
Psest_0186 +0.6 2.2 Protein-disulfide isomerase compare
Psest_0082 +0.6 1.3 Domain of unknown function (DUF892). compare
Psest_1750 +0.6 1.3 Protein of unknown function (DUF2802). compare
Psest_1632 +0.6 2.0 Predicted permeases compare
Psest_1535 +0.6 2.0 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_4161 +0.6 1.4 Flagellar basal body-associated protein compare
Psest_1125 +0.6 2.0 Protein of unknown function (DUF3509). compare
Psest_0673 +0.6 1.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_3559 +0.6 2.3 thioredoxin compare
Psest_2603 +0.6 4.2 capsular exopolysaccharide family compare
Psest_4160 +0.6 1.6 RNA polymerase sigma factor, FliA/WhiG family compare
Psest_4201 +0.6 0.6 general secretion pathway protein F compare
Psest_0782 +0.6 2.2 Transcriptional regulator of aromatic amino acids metabolism compare
Psest_2576 +0.6 2.6 hypothetical protein compare
Psest_1720 +0.6 3.5 flagellar motor switch protein FliG compare
Psest_1822 +0.6 2.4 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0732 +0.6 1.4 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_4064 +0.6 1.6 Lactate dehydrogenase and related dehydrogenases compare
Psest_0820 +0.6 1.1 hypothetical protein compare
Psest_2632 +0.6 2.5 ribosomal protein S12 methylthiotransferase RimO compare
Psest_1315 +0.6 1.1 hypothetical protein compare
Psest_2681 +0.6 1.6 Uncharacterized protein conserved in bacteria compare
Psest_0790 +0.6 1.7 Uncharacterized protein conserved in bacteria compare
Psest_2293 +0.6 0.7 hypothetical protein compare
Psest_3827 +0.6 1.8 Transcriptional regulator compare
Psest_4405 +0.6 0.8 hypothetical protein compare
Psest_0437 +0.6 1.1 hypothetical protein compare
Psest_3951 +0.6 1.4 proline iminopeptidase, Neisseria-type subfamily compare
Psest_2413 +0.6 1.4 Periplasmic protein TonB, links inner and outer membranes compare
Psest_1382 +0.6 1.7 Transcription elongation factor compare
Psest_2423 +0.6 2.0 Uncharacterized conserved protein compare
Psest_3447 +0.6 1.1 Uncharacterized MobA-related protein compare
Psest_3563 +0.6 1.6 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_2614 +0.6 4.5 Predicted glycosyltransferases compare
Psest_1878 +0.6 1.2 Uncharacterized protein conserved in bacteria compare
Psest_4106 +0.6 1.6 formate dehydrogenase, gamma subunit compare
Psest_0093 +0.6 1.4 Uncharacterized enzyme of phosphonate metabolism compare
Psest_1514 +0.5 2.3 Glycine cleavage system regulatory protein compare
Psest_2586 +0.5 4.4 FimV N-terminal domain compare
Psest_0734 +0.5 1.0 RND family efflux transporter, MFP subunit compare
Psest_4158 +0.5 1.1 Flagellar motor protein compare
Psest_1230 +0.5 0.9 Uncharacterized protein conserved in bacteria compare
Psest_3545 +0.5 1.1 clan AA aspartic protease, TIGR02281 family compare
Psest_4345 +0.5 2.6 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_0568 +0.5 1.3 pseudouridine synthase compare
Psest_3231 +0.5 0.7 hypothetical protein compare
Psest_0378 +0.5 1.2 Lactate dehydrogenase and related dehydrogenases compare
Psest_0207 +0.5 1.1 hypothetical protein compare
Psest_4113 +0.5 3.1 hypothetical protein compare
Psest_1849 +0.5 1.0 Predicted glutamine amidotransferase compare
Psest_1466 +0.5 1.4 transcriptional regulator, Spx/MgsR family compare
Psest_3437 +0.5 1.2 diguanylate cyclase (GGDEF) domain compare
Psest_3558 +0.5 1.6 Predicted transporter component compare
Psest_0660 +0.5 0.9 Methyl-accepting chemotaxis protein compare
Psest_1065 +0.5 0.9 hypothetical protein compare
Psest_1936 +0.5 2.1 Response regulator with putative antiterminator output domain compare
Psest_3239 +0.5 1.3 hypothetical protein compare
Psest_1176 +0.5 1.6 Urea transporter compare
Psest_4148 +0.5 1.4 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Psest_3047 +0.5 0.6 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_2101 +0.5 0.8 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source L-Citrulline in Pseudomonas stutzeri RCH2

For nitrogen source L-Citrulline across organisms