Experiment set13H1 for Pseudomonas stutzeri RCH2

Compare to:

L-Proline nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3944 -5.8 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3080 -5.8 -3.8 AraC-type DNA-binding domain-containing proteins compare
Psest_0155 -5.7 -9.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3648 -5.6 -10.8 anthranilate phosphoribosyltransferase compare
Psest_2578 -5.4 -16.3 O-succinylhomoserine sulfhydrylase compare
Psest_3649 -5.4 -12.0 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3226 -5.4 -1.5 Predicted membrane protein compare
Psest_3866 -5.3 -22.5 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3079 -5.3 -15.5 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) conserved
Psest_2591 -5.2 -4.6 3-isopropylmalate dehydratase, large subunit compare
Psest_3650 -5.2 -18.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0153 -5.0 -17.4 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0280 -4.9 -16.6 homoserine O-acetyltransferase compare
Psest_3932 -4.7 -9.6 nitrogen regulation protein NR(I) compare
Psest_3298 -4.6 -15.0 histidinol dehydrogenase compare
Psest_3078 -4.5 -14.4 L-proline:Na+ symporter (from data) conserved
Psest_0326 -4.5 -20.0 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0279 -4.4 -9.9 methionine biosynthesis protein MetW compare
Psest_3721 -4.4 -9.8 Malic enzyme compare
Psest_2584 -4.3 -8.4 Phosphoribosylanthranilate isomerase compare
Psest_2590 -4.3 -1.7 3-isopropylmalate dehydratase, small subunit compare
Psest_3299 -4.3 -15.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0062 -4.3 -16.8 tryptophan synthase, alpha subunit compare
Psest_0687 -4.3 -12.1 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3864 -4.2 -20.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3647 -4.2 -8.5 Indole-3-glycerol phosphate synthase compare
Psest_2589 -4.1 -13.3 3-isopropylmalate dehydrogenase compare
Psest_0325 -4.1 -15.4 Putative threonine efflux protein compare
Psest_0063 -4.0 -11.4 tryptophan synthase, beta subunit compare
Psest_0313 -4.0 -9.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3943 -4.0 -6.6 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0152 -3.7 -7.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_1473 -3.7 -9.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3931 -3.7 -9.3 Signal transduction histidine kinase, nitrogen specific compare
Psest_1295 -3.5 -10.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3818 -3.4 -10.4 endoribonuclease L-PSP, putative compare
Psest_2845 -3.4 -14.4 [Protein-PII] uridylyltransferase compare
Psest_1772 -3.3 -6.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2579 -3.1 -5.6 amidophosphoribosyltransferase compare
Psest_2333 -2.9 -1.6 Protein of unknown function (DUF3359). compare
Psest_0327 -2.9 -6.3 Transcriptional regulator compare
Psest_3301 -2.9 -5.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_3998 -2.4 -9.3 glutamate--cysteine ligase compare
Psest_3297 -2.3 -11.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3159 -2.2 -7.4 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1013 -2.2 -3.0 phosphoribosylamine--glycine ligase compare
Psest_1474 -2.2 -2.6 phosphoribosylaminoimidazole synthetase compare
Psest_2090 -2.2 -4.2 Protein of unknown function (DUF2970). compare
Psest_1012 -2.1 -6.2 Signal transduction histidine kinase compare
Psest_1724 -2.1 -6.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4078 -2.0 -3.0 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2088 -2.0 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_2946 -1.9 -3.7 septum site-determining protein MinD compare
Psest_2325 -1.9 -10.9 alpha-L-glutamate ligase-related protein compare
Psest_3338 -1.9 -2.3 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0737 -1.8 -1.5 Cu(I)-responsive transcriptional regulator compare
Psest_1037 -1.8 -2.1 acetolactate synthase, small subunit compare
Psest_2324 -1.8 -13.0 hypothetical protein compare
Psest_2329 -1.8 -12.7 Transcriptional regulator compare
Psest_3129 -1.7 -1.7 tyrosine recombinase XerD compare
Psest_0952 -1.7 -3.7 Uncharacterized conserved protein compare
Psest_0953 -1.7 -8.5 iron-sulfur cluster-binding protein compare
Psest_0954 -1.7 -6.8 Fe-S oxidoreductase compare
Psest_2323 -1.7 -11.2 Uncharacterized protein conserved in archaea compare
Psest_3351 -1.6 -6.6 peptide chain release factor 3 compare
Psest_3339 -1.6 -6.0 Signal transduction histidine kinase compare
Psest_3806 -1.6 -7.3 Phosphomannomutase compare
Psest_0498 -1.6 -1.6 ribosome small subunit-dependent GTPase A compare
Psest_3810 -1.6 -1.0 orotate phosphoribosyltransferase compare
Psest_2651 -1.5 -4.8 DNA topoisomerase I, bacterial compare
Psest_2719 -1.5 -1.7 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_2810 -1.5 -4.1 5'/3'-nucleotidase SurE compare
Psest_1679 -1.5 -2.3 ribonuclease, Rne/Rng family compare
Psest_2809 -1.5 -3.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0136 -1.4 -9.6 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_3720 -1.4 -11.3 penicillin-binding protein, 1A family compare
Psest_0138 -1.4 -8.8 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_1974 -1.4 -3.0 integration host factor, alpha subunit compare
Psest_2872 -1.4 -2.1 protein RecA compare
Psest_1260 -1.4 -6.0 type IV pilus biogenesis/stability protein PilW compare
Psest_0489 -1.4 -1.6 phosphoserine phosphatase SerB compare
Psest_0300 -1.4 -7.2 Methyl-accepting chemotaxis protein compare
Psest_2561 -1.4 -1.3 hypothetical protein compare
Psest_0718 -1.4 -4.8 nicotinate-nucleotide pyrophosphorylase compare
Psest_2104 -1.3 -2.2 IscR-regulated protein YhgI compare
Psest_0297 -1.3 -4.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3113 -1.3 -2.4 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1686 -1.3 -3.2 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0442 -1.3 -3.1 ATPases of the AAA+ class compare
Psest_1496 -1.3 -1.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_3862 -1.3 -9.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_1305 -1.3 -2.2 Heat shock protein compare
Psest_3288 -1.2 -8.7 type IV-A pilus assembly ATPase PilB compare
Psest_0533 -1.2 -5.2 Sel1 repeat. compare
Psest_3719 -1.2 -8.4 type IV pilus assembly protein PilM compare
Psest_0491 -1.2 -7.5 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3715 -1.2 -9.1 type IV pilus secretin (or competence protein) PilQ compare
Psest_0958 -1.2 -5.8 Oligoketide cyclase/lipid transport protein compare
Psest_2530 -1.2 -4.2 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3237 -1.2 -1.7 hypothetical protein compare
Psest_3092 -1.2 -1.9 ribonuclease III, bacterial compare
Psest_4191 -1.2 -3.2 Transcriptional regulator compare
Psest_1509 -1.2 -5.6 quinolinate synthetase complex, A subunit compare
Psest_3178 -1.1 -3.1 formyltetrahydrofolate deformylase compare
Psest_1640 -1.1 -7.6 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_4044 -1.1 -3.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2944 -1.1 -1.9 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_1388 -1.1 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3047 -1.1 -1.2 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_2023 -1.1 -3.3 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_4134 -1.1 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_2232 -1.1 -8.7 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3860 -1.0 -3.5 Predicted permeases compare
Psest_3927 -1.0 -3.5 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_0066 -1.0 -1.7 Protein of unknown function (DUF3060). compare
Psest_0257 -1.0 -2.4 Predicted Zn-dependent peptidases compare
Psest_3069 -1.0 -2.2 3-oxoadipate enol-lactonase compare
Psest_0284 -1.0 -7.2 pyridoxal phosphate enzyme, YggS family compare
Psest_3716 -1.0 -6.1 Tfp pilus assembly protein PilP compare
Psest_0508 -1.0 -5.2 gamma-glutamyl phosphate reductase compare
Psest_4142 -1.0 -1.8 hypothetical protein compare
Psest_0867 -1.0 -1.4 hypothetical protein compare
Psest_0285 -1.0 -5.3 pilus retraction protein PilT compare
Psest_3717 -1.0 -4.5 Tfp pilus assembly protein PilO compare
Psest_3287 -1.0 -4.1 Type II secretory pathway, component PulF compare
Psest_4064 -1.0 -2.9 Lactate dehydrogenase and related dehydrogenases compare
Psest_0028 -1.0 -3.7 Coproporphyrinogen III oxidase compare
Psest_2424 -1.0 -2.3 K+ transport systems, NAD-binding component compare
Psest_3188 -1.0 -3.2 hypothetical protein compare
Psest_3286 -1.0 -4.7 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_1354 -0.9 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0705 -0.9 -6.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4095 -0.9 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_2293 -0.9 -1.1 hypothetical protein compare
Psest_3289 -0.9 -4.9 prepilin-type N-terminal cleavage/methylation domain compare
Psest_3478 -0.9 -1.7 Cytochrome B561 compare
Psest_4315 -0.9 -2.2 ABC-type metal ion transport system, permease component compare
Psest_1516 -0.9 -2.1 Uncharacterized lipoprotein compare
Psest_1518 -0.9 -1.7 tRNA_Ser_CGA compare
Psest_2586 -0.9 -7.7 FimV N-terminal domain compare
Psest_2646 -0.9 -1.1 SOS regulatory protein LexA compare
Psest_0842 -0.9 -1.8 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_3700 -0.9 -1.2 hypothetical protein compare
Psest_3375 -0.9 -4.6 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1805 -0.9 -2.0 integration host factor, beta subunit compare
Psest_3075 -0.9 -4.9 sodium/proline symporter compare
Psest_2967 -0.9 -3.3 flagellar basal-body rod protein FlgC compare
Psest_2123 -0.9 -2.2 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_0137 -0.9 -4.4 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_4310 -0.8 -1.2 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1506 -0.8 -3.2 queuosine biosynthesis protein QueC compare
Psest_3718 -0.8 -2.4 Tfp pilus assembly protein PilN compare
Psest_4393 -0.8 -3.2 Capsule polysaccharide export protein compare
Psest_0024 -0.8 -5.1 LysM domain. compare
Psest_4086 -0.8 -4.5 Transcriptional regulator compare
Psest_0193 -0.8 -1.1 conserved hypothetical protein compare
Psest_0154 -0.8 -2.1 Uncharacterized conserved protein compare
Psest_0445 -0.8 -5.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1704 -0.8 -1.2 Dehydrogenases (flavoproteins) compare
Psest_3767 -0.8 -2.7 tyrosine recombinase XerC compare
Psest_4163 -0.8 -1.9 hypothetical protein compare
Psest_2566 -0.8 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_0334 -0.8 -2.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3809 -0.8 -3.0 hypothetical protein compare
Psest_2527 -0.8 -4.2 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_2173 -0.8 -2.7 competence/damage-inducible protein CinA C-terminal domain compare
Psest_1709 -0.8 -1.5 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1750 -0.8 -1.0 Protein of unknown function (DUF2802). compare
Psest_0771 -0.8 -5.0 Acyl-CoA hydrolase compare
Psest_2714 -0.8 -1.5 7-cyano-7-deazaguanine reductase compare
Psest_0411 -0.8 -4.7 biotin synthetase compare
Psest_3171 -0.8 -5.0 Predicted ATPase related to phosphate starvation-inducible protein PhoH compare
Psest_1486 -0.8 -1.4 hypothetical protein compare
Psest_1819 -0.7 -6.3 Nucleoside-diphosphate-sugar epimerases compare
Psest_1065 -0.7 -1.9 hypothetical protein compare
Psest_2855 -0.7 -1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3303 -0.7 -3.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2096 -0.7 -1.9 Domain of unknown function (DUF1883). compare
Psest_4363 -0.7 -4.0 ATPases involved in chromosome partitioning compare
Psest_1695 -0.7 -2.2 Tfp pilus assembly protein PilZ compare
Psest_0831 -0.7 -0.8 hypothetical protein compare
Psest_3853 -0.7 -2.2 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2538 -0.7 -1.2 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3843 -0.7 -3.5 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_4221 -0.7 -3.6 homoserine kinase, Neisseria type compare
Psest_4330 -0.7 -2.0 Protein of unknown function (DUF2909). compare
Psest_3322 -0.7 -6.0 TIGR02099 family protein compare
Psest_3317 -0.7 -3.2 Phosphotransferase System HPr (HPr) Family compare
Psest_3502 -0.7 -2.9 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_1999 -0.7 -0.7 pseudouridine synthase compare
Psest_0079 -0.7 -2.9 hypothetical protein compare
Psest_2532 -0.7 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_2308 -0.7 -0.7 Predicted Fe-S protein compare
Psest_2557 -0.7 -1.2 Protein of unknown function (DUF2474). compare
Psest_0789 -0.7 -2.2 hypothetical protein compare
Psest_3101 -0.7 -5.0 L-aspartate oxidase compare
Psest_0368 -0.7 -1.6 Transcriptional regulator compare
Psest_1691 -0.7 -1.9 aminodeoxychorismate lyase compare
Psest_3215 -0.7 -2.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_1167 -0.7 -0.8 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Proline in Pseudomonas stutzeri RCH2

For nitrogen source L-Proline across organisms