Experiment set12S713 for Pseudomonas fluorescens FW300-N1B4

Compare to:

TIme6-nophage

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_448 -3.4 -3.3 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_1408 -3.1 -4.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_3468 -2.9 -2.9 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_2272 -2.9 -4.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_742 -2.6 -10.8 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2282 -2.5 -8.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_4568 -2.5 -2.7 FIG00793915: hypothetical protein compare
Pf1N1B4_164 -2.4 -3.1 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_1434 -2.4 -5.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_769 -2.2 -8.8 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1831 -2.1 -7.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1565 -2.0 -2.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_4028 -2.0 -3.2 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_3697 -2.0 -7.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2545 -1.9 -10.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2879 -1.8 -6.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2547 -1.8 -3.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_74 -1.8 -2.2 hypothetical protein compare
Pf1N1B4_197 -1.8 -2.8 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_2548 -1.7 -5.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_4030 -1.7 -2.9 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1065 -1.7 -7.2 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_2303 -1.7 -11.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_799 -1.7 -2.3 hypothetical protein compare
Pf1N1B4_1 -1.6 -1.8 Colicin V production protein compare
Pf1N1B4_1067 -1.6 -4.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2549 -1.6 -4.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2878 -1.6 -6.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2322 -1.6 -2.4 FIG015547: peptidase, M16 family compare
Pf1N1B4_2850 -1.6 -5.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_5383 -1.5 -8.4 hypothetical protein compare
Pf1N1B4_1475 -1.5 -4.9 FIG00962376: hypothetical protein compare
Pf1N1B4_1566 -1.5 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_6 -1.5 -2.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_4860 -1.4 -2.4 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf1N1B4_762 -1.4 -5.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_1624 -1.4 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_4051 -1.4 -2.8 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_2384 -1.3 -7.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_3812 -1.3 -6.4 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_165 -1.3 -2.7 FIG00638667: hypothetical protein compare
Pf1N1B4_2163 -1.3 -2.4 hypothetical protein compare
Pf1N1B4_1906 -1.3 -2.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4523 -1.3 -2.4 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_4831 -1.3 -2.1 Outer membrane protein assembly factor YaeT precursor compare
Pf1N1B4_3751 -1.3 -2.4 FIG00953060: hypothetical protein compare
Pf1N1B4_6041 -1.2 -1.6 Carbon storage regulator compare
Pf1N1B4_3906 -1.2 -2.2 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_3168 -1.2 -2.1 AmpG permease compare
Pf1N1B4_32 -1.2 -2.5 Transcriptional regulator, TetR family compare
Pf1N1B4_5476 -1.2 -1.6 hypothetical protein compare
Pf1N1B4_644 -1.2 -1.7 Cold shock protein CspC compare
Pf1N1B4_4477 -1.2 -2.4 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_4039 -1.2 -3.8 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_2939 -1.2 -3.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_327 -1.2 -1.5 hypothetical protein compare
Pf1N1B4_1830 -1.1 -3.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1307 -1.1 -1.6 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_578 -1.1 -2.0 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_967 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_733 -1.1 -1.1 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_3907 -1.1 -2.2 FIG00953287: hypothetical protein compare
Pf1N1B4_3625 -1.1 -3.0 Flagellar synthesis regulator FleN compare
Pf1N1B4_3620 -1.1 -2.0 Flagellar biosynthesis protein FliR compare
Pf1N1B4_3612 -1.1 -2.9 Flagellar hook-length control protein FliK compare
Pf1N1B4_3961 -1.1 -2.2 transcriptional regulator, MerR family compare
Pf1N1B4_1472 -1.1 -2.0 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_2173 -1.1 -3.1 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_3484 -1.1 -3.2 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_751 -1.0 -1.3 hypothetical protein compare
Pf1N1B4_1625 -1.0 -3.0 FIG00956267: hypothetical protein compare
Pf1N1B4_122 -1.0 -2.5 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_5266 -1.0 -1.1 hypothetical protein compare
Pf1N1B4_5665 -1.0 -2.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_4035 -1.0 -1.7 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_731 -1.0 -1.7 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_133 -1.0 -2.1 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf1N1B4_2008 -1.0 -6.1 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_1545 -1.0 -6.4 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_483 -1.0 -2.4 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_4723 -1.0 -1.8 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide compare
Pf1N1B4_4038 -1.0 -1.4 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2337 -1.0 -4.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_617 -1.0 -2.0 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_3143 -1.0 -2.2 RecA protein compare
Pf1N1B4_5618 -1.0 -1.9 Excinuclease ABC subunit C compare
Pf1N1B4_5147 -1.0 -1.9 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase compare
Pf1N1B4_4041 -1.0 -2.1 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_349 -1.0 -2.8 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf1N1B4_3011 -1.0 -1.9 Tyrosine recombinase XerD compare
Pf1N1B4_1458 -1.0 -4.9 Probable transcription regulator Mig-14 compare
Pf1N1B4_372 -1.0 -2.0 UDP-galactose-lipid carrier transferase (EC 2.-.-.-) compare
Pf1N1B4_4897 -1.0 -1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_4993 -1.0 -2.3 Arabinose efflux permease compare
Pf1N1B4_4921 -0.9 -1.5 Haloacid dehalogenase, type II compare
Pf1N1B4_3595 -0.9 -1.8 Flagellin protein FlaG compare
Pf1N1B4_4802 -0.9 -1.7 polysaccharide deacetylase compare
Pf1N1B4_1780 -0.9 -2.7 FIG00961586: hypothetical protein compare
Pf1N1B4_5407 -0.9 -2.2 hypothetical protein compare
Pf1N1B4_2338 -0.9 -5.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2112 -0.9 -7.4 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_230 -0.9 -2.0 FIG00953472: hypothetical protein compare
Pf1N1B4_4352 -0.9 -1.7 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_5815 -0.9 -2.0 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_2880 -0.9 -6.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1554 -0.9 -4.5 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_3836 -0.9 -2.5 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_3153 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_1235 -0.9 -3.5 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_3692 -0.9 -1.6 Chaperone protein HtpG compare
Pf1N1B4_901 -0.9 -2.8 hypothetical protein compare
Pf1N1B4_2047 -0.8 -3.0 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_1403 -0.8 -5.6 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_1627 -0.8 -1.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_4829 -0.8 -2.4 Membrane protein, putative compare
Pf1N1B4_4838 -0.8 -2.7 Putative lipase compare
Pf1N1B4_4725 -0.8 -2.1 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) compare
Pf1N1B4_4957 -0.8 -0.8 Transcriptional regulator, TetR family compare
Pf1N1B4_538 -0.8 -2.3 hypothetical protein compare
Pf1N1B4_1570 -0.8 -3.3 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_4208 -0.8 -1.9 organophosphate pesticide hydrolase compare
Pf1N1B4_4280 -0.8 -2.7 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf1N1B4_34 -0.8 -1.3 Xanthine permease compare
Pf1N1B4_4029 -0.8 -1.8 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_5224 -0.8 -3.1 tRNA-Arg-CCT compare
Pf1N1B4_4857 -0.8 -3.1 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_4309 -0.8 -2.9 Translation elongation factor Tu compare
Pf1N1B4_4613 -0.8 -1.5 FIG00953934: hypothetical protein compare
Pf1N1B4_886 -0.8 -1.6 FIG137478: Hypothetical protein compare
Pf1N1B4_2359 -0.8 -2.4 Chemotaxis signal transduction protein compare
Pf1N1B4_2851 -0.8 -1.0 hypothetical protein compare
Pf1N1B4_4980 -0.8 -1.5 putative lipoprotein compare
Pf1N1B4_1003 -0.8 -1.7 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3819 -0.8 -3.1 Methylisocitrate lyase (EC 4.1.3.30) compare
Pf1N1B4_5912 -0.8 -2.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3537 -0.7 -2.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_2023 -0.7 -3.7 L-asparaginase (EC 3.5.1.1) (from data) compare
Pf1N1B4_2621 -0.7 -1.2 PspA/IM30 family protein compare
Pf1N1B4_1914 -0.7 -3.4 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf1N1B4_2684 -0.7 -2.0 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf1N1B4_1679 -0.7 -1.2 Membrane-fusion protein compare
Pf1N1B4_3985 -0.7 -1.2 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_3494 -0.7 -2.3 Flavoprotein WrbA compare
Pf1N1B4_94 -0.7 -2.0 Glutathione S-transferase (EC 2.5.1.18) compare
Pf1N1B4_493 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_85 -0.7 -3.0 Oxidoreductase, aldo/keto reductase family compare
Pf1N1B4_76 -0.7 -1.2 ATP binding protein compare
Pf1N1B4_259 -0.7 -1.5 Glutathione peroxidase family protein compare
Pf1N1B4_677 -0.7 -2.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_137 -0.7 -2.1 Pyoverdine biosynthesis related protein PvdP compare
Pf1N1B4_2169 -0.7 -1.6 FIG00953808: hypothetical protein compare
Pf1N1B4_102 -0.7 -1.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_2791 -0.7 -1.1 Putative inner membrane protein (Fragment) compare
Pf1N1B4_522 -0.7 -1.8 HlyD family secretion protein compare
Pf1N1B4_2114 -0.7 -3.6 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_4549 -0.7 -1.5 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_3928 -0.7 -1.7 FIG00955661: hypothetical protein compare
Pf1N1B4_3909 -0.7 -1.0 Cell division inhibitor-related protein compare
Pf1N1B4_2489 -0.7 -1.0 Biotin synthesis protein BioH compare
Pf1N1B4_437 -0.7 -3.0 hypothetical protein compare
Pf1N1B4_4972 -0.7 -1.4 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_485 -0.7 -2.5 L-lysine permease compare
Pf1N1B4_5090 -0.7 -1.4 glycosyl transferase, family 2 compare
Pf1N1B4_1614 -0.7 -1.4 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_3328 -0.7 -1.1 Rhodanese-like domain protein compare
Pf1N1B4_4594 -0.7 -1.3 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_4916 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_234 -0.7 -1.0 hypothetical protein compare
Pf1N1B4_2784 -0.7 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1936 -0.7 -2.9 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_5058 -0.7 -1.4 D-galactarate permease compare
Pf1N1B4_159 -0.7 -1.6 Putative threonine efflux protein compare
Pf1N1B4_4935 -0.6 -2.9 DinG family ATP-dependent helicase CPE1197 compare
Pf1N1B4_2853 -0.6 -1.2 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_5925 -0.6 -5.3 hypothetical protein compare
Pf1N1B4_5382 -0.6 -1.9 hypothetical protein compare
Pf1N1B4_3591 -0.6 -4.8 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_4123 -0.6 -1.3 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_5574 -0.6 -1.2 hypothetical protein compare
Pf1N1B4_3930 -0.6 -2.0 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) compare
Pf1N1B4_1511 -0.6 -1.7 FIG027190: Putative transmembrane protein compare
Pf1N1B4_5611 -0.6 -0.9 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
Pf1N1B4_5883 -0.6 -2.2 FIG00960892: hypothetical protein compare
Pf1N1B4_5552 -0.6 -1.2 hypothetical protein compare
Pf1N1B4_3973 -0.6 -2.1 ABC-type spermidine/putrescine transport system, permease component I compare
Pf1N1B4_4440 -0.6 -1.7 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_619 -0.6 -1.1 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_149 -0.6 -2.1 Pyoverdine sidechain non-ribosomal peptide synthetase PvdD compare
Pf1N1B4_2085 -0.6 -1.7 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_3519 -0.6 -1.5 Lipase (EC 3.1.1.3) compare
Pf1N1B4_2871 -0.6 -2.2 FIG00954216: hypothetical protein compare
Pf1N1B4_65 -0.6 -2.7 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf1N1B4_5976 -0.6 -1.3 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) compare
Pf1N1B4_652 -0.6 -4.5 Sensory box histidine kinase compare
Pf1N1B4_2709 -0.6 -1.7 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_656 -0.6 -3.5 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_3081 -0.6 -5.7 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_350 -0.6 -2.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_4817 -0.6 -2.1 Fe2+-dicitrate sensor, membrane component compare
Pf1N1B4_3458 -0.6 -1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in nophagecontrol experiments