Experiment set12S713 for Pseudomonas fluorescens FW300-N1B4

Compare to:

TIme6-nophage

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_1993 +1.3 3.2 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_4446 +1.3 3.1 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_5239 +1.1 3.8 hypothetical protein compare
Pf1N1B4_5779 +0.9 2.7 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_5588 +0.9 2.6 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf1N1B4_4516 +0.9 2.8 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_4659 +0.9 2.2 Putative outer membrane lipoprotein compare
Pf1N1B4_3296 +0.9 3.2 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_1340 +0.9 2.7 ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component compare
Pf1N1B4_275 +0.8 1.6 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_2150 +0.8 2.2 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_2958 +0.8 2.3 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_4515 +0.8 3.0 Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) compare
Pf1N1B4_5884 +0.8 2.2 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf1N1B4_114 +0.8 2.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_3498 +0.8 2.1 FIG00953240: hypothetical protein compare
Pf1N1B4_4879 +0.8 2.1 Chromosome segregation ATPases compare
Pf1N1B4_5597 +0.8 3.2 FIG005548: transport protein compare
Pf1N1B4_4335 +0.8 1.9 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_5357 +0.8 1.2 hypothetical protein compare
Pf1N1B4_81 +0.7 1.7 Putative sulfate permease compare
Pf1N1B4_1482 +0.7 2.2 hypothetical protein compare
Pf1N1B4_126 +0.7 1.9 Pirin compare
Pf1N1B4_4555 +0.7 2.5 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_4358 +0.7 1.7 Acetyltransferase, GNAT family compare
Pf1N1B4_5560 +0.7 1.9 hypothetical protein compare
Pf1N1B4_4255 +0.7 2.6 Putative phosphatase YfbT compare
Pf1N1B4_2453 +0.7 1.0 hypothetical protein compare
Pf1N1B4_2984 +0.7 3.1 VacJ-like lipoprotein precursor compare
Pf1N1B4_958 +0.7 1.4 Stringent starvation protein B compare
Pf1N1B4_5460 +0.7 2.5 TolA protein compare
Pf1N1B4_4849 +0.7 1.9 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_3975 +0.7 1.5 Transcriptional regulator, IclR family compare
Pf1N1B4_4733 +0.7 1.9 Fap system putative outer membrane protein compare
Pf1N1B4_3486 +0.7 2.1 Transcriptional regulator, AraC family compare
Pf1N1B4_5682 +0.7 2.0 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_5292 +0.7 1.5 hypothetical protein compare
Pf1N1B4_4668 +0.7 2.5 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_4755 +0.7 1.9 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_1721 +0.6 2.2 DNA-binding heavy metal response regulator compare
Pf1N1B4_4801 +0.6 2.6 Polysaccharide deacetylase compare
Pf1N1B4_2145 +0.6 1.2 Translation initiation inhibitor compare
Pf1N1B4_1695 +0.6 0.9 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_108 +0.6 1.8 FIG00954456: hypothetical protein compare
Pf1N1B4_1294 +0.6 1.2 VgrG protein compare
Pf1N1B4_3729 +0.6 1.3 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_51 +0.6 1.7 hypothetical protein compare
Pf1N1B4_2171 +0.6 1.7 Tyrosine recombinase XerC compare
Pf1N1B4_1958 +0.6 1.9 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_1584 +0.6 2.1 Histidine ABC transporter, permease protein (TC 3.A.1) compare
Pf1N1B4_2783 +0.6 1.7 Transcription elongation factor GreB-related protein compare
Pf1N1B4_3132 +0.6 2.5 FIG121501: Prophage tail protein compare
Pf1N1B4_2713 +0.6 1.5 FIG00955339: hypothetical protein compare
Pf1N1B4_4667 +0.6 1.5 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_5109 +0.6 1.7 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_5067 +0.6 2.1 PUTATIVE TRANSFERASE PROTEIN( EC:2.- ) compare
Pf1N1B4_2067 +0.6 1.5 Type VI secretion lipoprotein/VasD compare
Pf1N1B4_5753 +0.6 1.2 putative membrane protein compare
Pf1N1B4_341 +0.6 2.5 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf1N1B4_932 +0.6 1.5 FIG00963370: hypothetical protein compare
Pf1N1B4_5365 +0.6 1.5 hypothetical protein compare
Pf1N1B4_5760 +0.6 2.0 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_4253 +0.6 1.3 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_4083 +0.6 1.7 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_4721 +0.6 1.9 Nuclease inhibitor compare
Pf1N1B4_3722 +0.6 2.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_4997 +0.6 3.1 Methyl-accepting chemotaxis protein compare
Pf1N1B4_582 +0.6 2.6 FIG00959696: hypothetical protein compare
Pf1N1B4_5737 +0.6 1.8 Nitrate/nitrite transporter compare
Pf1N1B4_5043 +0.6 1.6 hypothetical protein compare
Pf1N1B4_1833 +0.6 2.9 FIG00953718: hypothetical protein compare
Pf1N1B4_5409 +0.6 3.0 hypothetical protein compare
Pf1N1B4_4602 +0.6 1.5 Transcriptional regulators, LysR family compare
Pf1N1B4_5823 +0.6 1.1 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_3260 +0.6 2.0 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf1N1B4_5187 +0.6 1.0 5S RNA compare
Pf1N1B4_3396 +0.6 1.9 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_345 +0.6 0.9 Integration host factor beta subunit compare
Pf1N1B4_740 +0.6 1.5 Leucyl-tRNA synthetase compare
Pf1N1B4_4825 +0.6 2.5 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_3764 +0.6 1.8 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_343 +0.6 2.2 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Pf1N1B4_5151 +0.6 1.7 FIG002283: Isochorismatase family protein compare
Pf1N1B4_1755 +0.5 2.4 FIG00955799: hypothetical protein compare
Pf1N1B4_5279 +0.5 1.6 hypothetical protein compare
Pf1N1B4_787 +0.5 1.5 Nudix hydrolase family protein PA3470 compare
Pf1N1B4_5904 +0.5 1.2 FIG00955320: hypothetical protein compare
Pf1N1B4_2807 +0.5 1.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_5498 +0.5 1.3 hypothetical protein compare
Pf1N1B4_4506 +0.5 1.6 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) compare
Pf1N1B4_499 +0.5 2.6 Similar to TadZ/CpaE, associated with Flp pilus assembly compare
Pf1N1B4_5416 +0.5 2.1 hypothetical protein compare
Pf1N1B4_1331 +0.5 1.8 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf1N1B4_5451 +0.5 1.6 hypothetical protein compare
Pf1N1B4_397 +0.5 2.8 Hexuronate transporter compare
Pf1N1B4_5387 +0.5 1.8 hypothetical protein compare
Pf1N1B4_5311 +0.5 1.2 hypothetical protein compare
Pf1N1B4_5073 +0.5 1.6 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf1N1B4_19 +0.5 1.9 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf1N1B4_4799 +0.5 1.1 Multidrug resistance protein B compare
Pf1N1B4_5746 +0.5 1.4 FIG139552: Putative protease compare
Pf1N1B4_1845 +0.5 1.5 FIG00954395: hypothetical protein compare
Pf1N1B4_4470 +0.5 1.4 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_3492 +0.5 2.0 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf1N1B4_4896 +0.5 2.3 N-ethylmaleimide reductase compare
Pf1N1B4_814 +0.5 1.2 Transcriptional regulator, PadR family compare
Pf1N1B4_5527 +0.5 2.1 hypothetical protein compare
Pf1N1B4_4886 +0.5 2.5 Phosphoglucomutase (EC 5.4.2.2) compare
Pf1N1B4_241 +0.5 1.3 Thiol-disulfide isomerase and thioredoxins compare
Pf1N1B4_3378 +0.5 2.2 Tricarboxylate transport protein TctB compare
Pf1N1B4_4717 +0.5 0.9 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_5721 +0.5 1.3 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_1059 +0.5 1.0 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_124 +0.5 1.1 Mechanosensitive ion channel compare
Pf1N1B4_1056 +0.5 2.0 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Pf1N1B4_3700 +0.5 1.6 Putative permease often clustered with de novo purine synthesis compare
Pf1N1B4_5701 +0.5 1.5 FIG00955602: hypothetical protein compare
Pf1N1B4_4192 +0.5 1.9 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_5149 +0.5 1.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf1N1B4_2412 +0.5 1.9 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_3988 +0.5 2.4 Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_1750 +0.5 1.0 Death on curing protein, Doc toxin compare
Pf1N1B4_3304 +0.5 2.5 Urea carboxylase-related ABC transporter, ATPase protein compare
Pf1N1B4_2460 +0.5 2.9 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf1N1B4_5787 +0.5 1.8 Gifsy-2 prophage protein compare
Pf1N1B4_3064 +0.5 1.9 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3098 +0.5 1.7 Ribonuclease HII (EC 3.1.26.4) compare
Pf1N1B4_240 +0.5 1.0 Transcriptional regulators compare
Pf1N1B4_465 +0.5 1.9 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_1636 +0.5 1.0 FIG00954739: hypothetical protein compare
Pf1N1B4_4590 +0.5 1.5 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_2833 +0.5 1.7 Benzoate transport protein compare
Pf1N1B4_3950 +0.5 1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3279 +0.5 1.7 putative membrane protein compare
Pf1N1B4_2870 +0.5 0.8 Regulator of competence-specific genes compare
Pf1N1B4_5745 +0.5 1.1 FIG139928: Putative protease compare
Pf1N1B4_1527 +0.5 1.7 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_1312 +0.5 1.3 hypothetical protein compare
Pf1N1B4_1346 +0.5 1.2 Urea ABC transporter, ATPase protein UrtD compare
Pf1N1B4_3264 +0.5 1.6 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_5463 +0.5 1.5 hypothetical protein compare
Pf1N1B4_4511 +0.5 1.7 D-galacturonate dehydrogenase (EC 1.1.1.203) (from data) compare
Pf1N1B4_4648 +0.5 1.1 transcriptional regulator, MerR family compare
Pf1N1B4_5720 +0.5 1.1 hypothetical protein compare
Pf1N1B4_4478 +0.5 1.6 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Pf1N1B4_3935 +0.5 1.5 Major facilitator family transporter compare
Pf1N1B4_4422 +0.5 0.9 ABC transporter amino acid-binding protein compare
Pf1N1B4_2674 +0.5 1.1 hypothetical protein compare
Pf1N1B4_4320 +0.5 1.5 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_2731 +0.5 1.8 Uncharacterized protein conserved in bacteria compare
Pf1N1B4_1390 +0.5 2.5 FIG00956548: hypothetical protein compare
Pf1N1B4_4462 +0.5 1.2 LysR family transcriptional regulator YbhD compare
Pf1N1B4_4118 +0.5 1.4 Cyn operon transcriptional activator compare
Pf1N1B4_4521 +0.5 1.7 Probable transmembrane protein compare
Pf1N1B4_4837 +0.4 1.1 hypothetical protein compare
Pf1N1B4_4669 +0.4 1.2 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_497 +0.4 2.2 Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly compare
Pf1N1B4_890 +0.4 1.6 DNA recombination and repair protein RecO compare
Pf1N1B4_4544 +0.4 1.0 Uncharacterized protein ImpA compare
Pf1N1B4_58 +0.4 2.4 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_3865 +0.4 1.5 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_4570 +0.4 1.6 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_5985 +0.4 1.6 FIG002465: BNR repeat protein compare
Pf1N1B4_5430 +0.4 1.1 hypothetical protein compare
Pf1N1B4_2370 +0.4 2.2 Malonate utilization transcriptional regulator compare
Pf1N1B4_1899 +0.4 1.9 Gfa-like protein compare
Pf1N1B4_4552 +0.4 1.7 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_5249 +0.4 1.3 Outer membrane protein A precursor compare
Pf1N1B4_5919 +0.4 2.1 Signal transduction response regulator / Tetratricopeptide repeat-containing protein compare
Pf1N1B4_4979 +0.4 1.3 Transcriptional regulator, AsnC family compare
Pf1N1B4_5979 +0.4 1.1 Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-) compare
Pf1N1B4_199 +0.4 1.7 FIG049111: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_3629 +0.4 2.0 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf1N1B4_1378 +0.4 2.4 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
Pf1N1B4_5725 +0.4 0.9 High-affinity iron permease compare
Pf1N1B4_3638 +0.4 1.5 FIG00955434: hypothetical protein compare
Pf1N1B4_4815 +0.4 1.9 Vitamin B12 ABC transporter, B12-binding component BtuF compare
Pf1N1B4_2959 +0.4 2.1 FIG067310: hypothetical protein compare
Pf1N1B4_1298 +0.4 2.1 Putative Nudix hydrolase YfcD (EC 3.6.-.-) compare
Pf1N1B4_2213 +0.4 2.0 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_4830 +0.4 1.1 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_3660 +0.4 2.2 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf1N1B4_365 +0.4 2.2 Cell division protein BolA compare
Pf1N1B4_3955 +0.4 1.9 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_5483 +0.4 1.1 hypothetical protein compare
Pf1N1B4_4331 +0.4 1.2 Transporter, LysE family compare
Pf1N1B4_5870 +0.4 1.2 VgrG protein compare
Pf1N1B4_5898 +0.4 1.1 hypothetical protein compare
Pf1N1B4_1979 +0.4 1.9 HflK protein compare
Pf1N1B4_5370 +0.4 0.8 hypothetical protein compare
Pf1N1B4_2196 +0.4 2.0 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_338 +0.4 0.9 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_2360 +0.4 1.1 hypothetical protein compare
Pf1N1B4_3881 +0.4 2.7 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf1N1B4_3627 +0.4 1.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_5061 +0.4 1.3 Valyl-tRNA synthetase compare
Pf1N1B4_37 +0.4 1.9 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
Pf1N1B4_4560 +0.4 1.1 Transcriptional regulator, MerR family compare
Pf1N1B4_4818 +0.4 1.1 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_378 +0.4 1.5 Carbon storage regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in nophagecontrol experiments