Experiment set12S711 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Time16-nophage

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2880 -3.2 -14.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_742 -3.2 -9.7 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1408 -3.0 -4.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2303 -2.9 -14.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2547 -2.8 -3.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_769 -2.7 -9.1 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1307 -2.7 -1.9 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3697 -2.6 -7.4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_762 -2.5 -5.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_15 -2.5 -5.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_5665 -2.5 -4.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2282 -2.5 -7.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2384 -2.4 -10.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2878 -2.3 -7.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_3153 -2.3 -2.7 hypothetical protein compare
Pf1N1B4_2272 -2.2 -3.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_3812 -2.2 -9.2 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_6 -2.2 -2.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1749 -2.2 -2.1 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_2548 -2.1 -4.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2545 -2.1 -9.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2549 -2.0 -4.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_4035 -2.0 -2.5 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_2879 -1.9 -6.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1067 -1.9 -3.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2850 -1.8 -5.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_5383 -1.8 -10.7 hypothetical protein compare
Pf1N1B4_5668 -1.8 -3.2 Peptidase, U7 family compare
Pf1N1B4_4040 -1.7 -2.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1317 -1.7 -3.1 Sensor histidine kinase/response regulator compare
Pf1N1B4_1831 -1.7 -5.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2112 -1.7 -11.9 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_4957 -1.6 -1.8 Transcriptional regulator, TetR family compare
Pf1N1B4_578 -1.6 -3.5 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_5666 -1.6 -2.5 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1627 -1.6 -2.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2338 -1.6 -8.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1065 -1.6 -6.7 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_2005 -1.6 -1.8 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_611 -1.6 -3.0 CoA transferase, CAIB/BAIF family compare
Pf1N1B4_2105 -1.5 -2.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_240 -1.5 -2.4 Transcriptional regulators compare
Pf1N1B4_2337 -1.5 -5.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_350 -1.5 -4.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_847 -1.5 -7.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_3011 -1.4 -3.1 Tyrosine recombinase XerD compare
Pf1N1B4_1566 -1.4 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_683 -1.4 -2.8 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_4039 -1.4 -4.4 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4494 -1.4 -2.4 hypothetical protein compare
Pf1N1B4_2177 -1.4 -1.8 FIG00953342: hypothetical protein compare
Pf1N1B4_1057 -1.4 -3.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2526 -1.4 -12.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_846 -1.4 -2.4 hypothetical protein compare
Pf1N1B4_2949 -1.4 -2.0 FIG00956396: hypothetical protein compare
Pf1N1B4_4833 -1.4 -2.7 DNA-binding response regulator, LuxR family compare
Pf1N1B4_1434 -1.4 -4.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2939 -1.3 -4.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_4822 -1.3 -2.3 Paraquat-inducible protein A compare
Pf1N1B4_1554 -1.3 -6.0 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_656 -1.2 -6.5 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_3547 -1.2 -2.4 DNA-binding response regulator compare
Pf1N1B4_12 -1.2 -5.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2568 -1.2 -2.1 Translation elongation factor Tu compare
Pf1N1B4_5552 -1.2 -2.6 hypothetical protein compare
Pf1N1B4_2853 -1.2 -1.9 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_2021 -1.2 -1.9 hypothetical protein compare
Pf1N1B4_2008 -1.2 -6.4 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_3468 -1.2 -1.8 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_1570 -1.2 -4.2 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_76 -1.1 -2.1 ATP binding protein compare
Pf1N1B4_974 -1.1 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_337 -1.1 -1.9 O-antigen export system permease protein RfbD compare
Pf1N1B4_339 -1.1 -1.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_5659 -1.1 -7.3 NfuA Fe-S protein maturation compare
Pf1N1B4_1830 -1.1 -3.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2858 -1.1 -7.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4870 -1.1 -1.9 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_141 -1.1 -5.5 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
Pf1N1B4_4592 -1.1 -1.7 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_3290 -1.1 -1.4 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_1624 -1.0 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_4462 -1.0 -1.8 LysR family transcriptional regulator YbhD compare
Pf1N1B4_1475 -1.0 -3.8 FIG00962376: hypothetical protein compare
Pf1N1B4_522 -1.0 -2.5 HlyD family secretion protein compare
Pf1N1B4_2924 -1.0 -1.8 FIG00955589: hypothetical protein compare
Pf1N1B4_5554 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_6004 -1.0 -3.1 tgtA5 cluster protein 1 compare
Pf1N1B4_5542 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_3484 -1.0 -3.1 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_4001 -1.0 -2.1 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_1668 -1.0 -4.5 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_4429 -1.0 -1.7 No significant database matches compare
Pf1N1B4_4531 -1.0 -1.6 FIG01221261: hypothetical protein compare
Pf1N1B4_4818 -1.0 -1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_414 -1.0 -2.6 transcriptional regulator compare
Pf1N1B4_3273 -1.0 -2.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_2023 -1.0 -5.2 L-asparaginase (EC 3.5.1.1) (from data) compare
Pf1N1B4_616 -1.0 -2.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_3991 -1.0 -1.7 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_2823 -0.9 -1.8 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_2047 -0.9 -2.6 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_3081 -0.9 -8.4 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_1565 -0.9 -1.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_5112 -0.9 -2.0 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_298 -0.9 -2.4 Transcription elongation factor GreB compare
Pf1N1B4_2489 -0.9 -1.2 Biotin synthesis protein BioH compare
Pf1N1B4_1691 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_5294 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_1637 -0.9 -2.0 FIG00954739: hypothetical protein compare
Pf1N1B4_4568 -0.9 -1.5 FIG00793915: hypothetical protein compare
Pf1N1B4_5511 -0.9 -2.8 hypothetical protein compare
Pf1N1B4_2465 -0.9 -1.4 Two-component response regulator CreB compare
Pf1N1B4_2173 -0.9 -2.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_6036 -0.9 -2.0 FIG00953132: hypothetical protein compare
Pf1N1B4_164 -0.9 -1.8 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_1625 -0.9 -2.3 FIG00956267: hypothetical protein compare
Pf1N1B4_3717 -0.9 -2.4 Permeases of the major facilitator superfamily compare
Pf1N1B4_4857 -0.9 -4.0 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_4744 -0.9 -2.1 Transcriptional regulator, LysR family compare
Pf1N1B4_3152 -0.9 -2.7 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_1545 -0.9 -5.0 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_4309 -0.9 -3.0 Translation elongation factor Tu compare
Pf1N1B4_4030 -0.9 -1.7 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1403 -0.8 -5.3 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_35 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_1155 -0.8 -3.0 hypothetical protein compare
Pf1N1B4_823 -0.8 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_652 -0.8 -5.6 Sensory box histidine kinase compare
Pf1N1B4_4051 -0.8 -1.7 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_5255 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_5722 -0.8 -1.7 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_5224 -0.8 -2.6 tRNA-Arg-CCT compare
Pf1N1B4_4065 -0.8 -3.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_3168 -0.8 -1.6 AmpG permease compare
Pf1N1B4_1048 -0.8 -1.9 Sulfate transporter, CysZ-type compare
Pf1N1B4_3709 -0.8 -2.3 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_5302 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_3074 -0.8 -1.7 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_5464 -0.8 -1.8 Cointegrate resolution protein T compare
Pf1N1B4_3143 -0.8 -2.0 RecA protein compare
Pf1N1B4_1315 -0.8 -2.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_5312 -0.8 -2.6 Putative activity regulator of membrane protease YbbK compare
Pf1N1B4_5584 -0.8 -1.5 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) compare
Pf1N1B4_5709 -0.8 -2.1 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_1458 -0.8 -4.6 Probable transcription regulator Mig-14 compare
Pf1N1B4_4318 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_2163 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_4381 -0.8 -2.0 Transcriptional regulator, LysR family compare
Pf1N1B4_2169 -0.8 -1.8 FIG00953808: hypothetical protein compare
Pf1N1B4_5619 -0.8 -1.4 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_5898 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_2527 -0.8 -5.6 ApaG protein compare
Pf1N1B4_4250 -0.8 -1.7 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_106 -0.8 -2.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3849 -0.8 -2.6 Transcriptional regulator, GntR family compare
Pf1N1B4_327 -0.8 -1.0 hypothetical protein compare
Pf1N1B4_5448 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_1511 -0.8 -1.5 FIG027190: Putative transmembrane protein compare
Pf1N1B4_3582 -0.8 -1.5 C-methyltransferase compare
Pf1N1B4_3316 -0.8 -2.1 Tricarboxylate transport transcriptional regulator TctD compare
Pf1N1B4_4734 -0.8 -1.6 Fap protein with C39 domain compare
Pf1N1B4_1191 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_4858 -0.8 -3.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_5925 -0.7 -6.0 hypothetical protein compare
Pf1N1B4_4029 -0.7 -1.5 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_5926 -0.7 -6.4 hypothetical protein compare
Pf1N1B4_3713 -0.7 -1.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_4135 -0.7 -3.0 hypothetical protein compare
Pf1N1B4_5077 -0.7 -1.7 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf1N1B4_1234 -0.7 -2.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_348 -0.7 -2.6 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_3775 -0.7 -1.6 FIG00956876: hypothetical protein compare
Pf1N1B4_1626 -0.7 -1.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_234 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_493 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_4569 -0.7 -1.8 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_2114 -0.7 -4.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_3530 -0.7 -3.0 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf1N1B4_2464 -0.7 -2.0 Ribosomal protein S6 glutaminyl transferase compare
Pf1N1B4_3491 -0.7 -2.2 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf1N1B4_4119 -0.7 -1.7 dioxygenase compare
Pf1N1B4_5675 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_336 -0.7 -4.1 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_4225 -0.7 -2.0 transcriptional regulator, AraC family compare
Pf1N1B4_72 -0.7 -1.2 Transcriptional regulator, LysR family compare
Pf1N1B4_4362 -0.7 -2.3 hypothetical protein compare
Pf1N1B4_4731 -0.7 -2.0 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_1153 -0.7 -1.8 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_2283 -0.7 -1.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_4505 -0.7 -1.9 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_4982 -0.7 -1.3 Transcriptional regulator, AraC family compare
Pf1N1B4_4053 -0.7 -2.4 Cold shock protein CspD compare
Pf1N1B4_5407 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_4509 -0.7 -1.1 Aldose 1-epimerase compare
Pf1N1B4_4532 -0.7 -1.3 ClpB protein compare
Pf1N1B4_5976 -0.7 -1.4 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) compare
Pf1N1B4_2380 -0.7 -6.0 Cytochrome B561 compare
Pf1N1B4_5661 -0.7 -3.4 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf1N1B4_4949 -0.7 -1.8 Formate dehydrogenase N gamma subunit (EC 1.2.1.2) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in nophagecontrol experiments