Experiment set12S710 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Time16-nophage

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_769 -3.4 -9.5 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_742 -3.3 -10.7 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2303 -3.1 -16.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2547 -3.1 -3.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1408 -3.0 -4.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1307 -2.9 -2.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2880 -2.7 -14.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2272 -2.7 -4.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_3697 -2.6 -8.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2282 -2.5 -7.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_4040 -2.5 -3.2 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_2878 -2.4 -7.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2879 -2.4 -7.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_3812 -2.3 -10.1 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2850 -2.3 -5.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_1334 -2.2 -2.9 FIG00955840: hypothetical protein compare
Pf1N1B4_2548 -2.2 -5.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2384 -2.2 -10.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_6 -2.1 -3.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2338 -2.1 -9.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_5725 -2.0 -2.7 High-affinity iron permease compare
Pf1N1B4_762 -2.0 -6.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_578 -1.9 -3.8 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_1434 -1.9 -5.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2545 -1.9 -10.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1831 -1.9 -6.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_3153 -1.9 -3.0 hypothetical protein compare
Pf1N1B4_2337 -1.9 -6.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_5665 -1.8 -4.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2549 -1.7 -4.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_5383 -1.7 -9.9 hypothetical protein compare
Pf1N1B4_2112 -1.7 -12.6 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1065 -1.7 -7.1 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_644 -1.7 -2.2 Cold shock protein CspC compare
Pf1N1B4_1067 -1.7 -4.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_4952 -1.6 -2.9 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_224 -1.6 -2.2 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_76 -1.5 -2.6 ATP binding protein compare
Pf1N1B4_1906 -1.5 -2.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_12 -1.5 -5.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_188 -1.5 -2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1057 -1.4 -3.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_16 -1.4 -3.6 Cys regulon transcriptional activator CysB compare
Pf1N1B4_2464 -1.4 -3.5 Ribosomal protein S6 glutaminyl transferase compare
Pf1N1B4_2008 -1.4 -7.5 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_3446 -1.4 -2.5 Putative GTPases (G3E family) compare
Pf1N1B4_4857 -1.4 -5.5 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_683 -1.4 -2.7 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_1430 -1.3 -3.3 Predicted signal transduction protein compare
Pf1N1B4_1627 -1.3 -2.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_1565 -1.3 -2.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2105 -1.3 -1.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_1624 -1.3 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_3468 -1.3 -2.0 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_4029 -1.3 -2.8 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_1566 -1.3 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2169 -1.3 -2.6 FIG00953808: hypothetical protein compare
Pf1N1B4_2526 -1.3 -10.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_4028 -1.3 -2.7 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1830 -1.3 -3.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1475 -1.2 -4.4 FIG00962376: hypothetical protein compare
Pf1N1B4_4870 -1.2 -2.0 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_1554 -1.2 -6.1 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_2465 -1.2 -2.5 Two-component response regulator CreB compare
Pf1N1B4_4051 -1.2 -2.2 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_141 -1.2 -6.2 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
Pf1N1B4_15 -1.2 -3.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_4957 -1.2 -1.5 Transcriptional regulator, TetR family compare
Pf1N1B4_2858 -1.2 -8.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2047 -1.2 -4.1 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_847 -1.2 -5.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_4038 -1.2 -1.4 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_350 -1.1 -3.8 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_5575 -1.1 -2.6 hypothetical protein compare
Pf1N1B4_2173 -1.1 -3.1 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_3506 -1.1 -2.4 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_483 -1.1 -2.5 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_4916 -1.1 -3.4 hypothetical protein compare
Pf1N1B4_855 -1.1 -2.5 FIG021952: putative membrane protein compare
Pf1N1B4_3906 -1.1 -2.2 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_5815 -1.0 -2.3 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_656 -1.0 -5.9 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_5652 -1.0 -2.3 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_4962 -1.0 -2.7 C4-dicarboxylate transport protein compare
Pf1N1B4_3152 -1.0 -3.9 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_2939 -1.0 -3.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_298 -1.0 -2.8 Transcription elongation factor GreB compare
Pf1N1B4_4103 -1.0 -1.7 Flagellar synthesis regulator FleN compare
Pf1N1B4_2037 -1.0 -3.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_890 -1.0 -2.5 DNA recombination and repair protein RecO compare
Pf1N1B4_1403 -0.9 -6.3 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_5666 -0.9 -1.7 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2739 -0.9 -2.0 acetyltransferase, GNAT family compare
Pf1N1B4_3081 -0.9 -8.6 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_4847 -0.9 -2.1 Various polyols ABC transporter, ATP-binding component compare
Pf1N1B4_4839 -0.9 -1.3 lipoprotein compare
Pf1N1B4_2527 -0.9 -6.7 ApaG protein compare
Pf1N1B4_2674 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_1545 -0.9 -5.5 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_2114 -0.9 -4.4 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_4039 -0.9 -3.2 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4900 -0.9 -1.9 Alkaline proteinase inhibitor precursor compare
Pf1N1B4_4035 -0.9 -1.5 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_2023 -0.9 -4.4 L-asparaginase (EC 3.5.1.1) (from data) compare
Pf1N1B4_5224 -0.9 -3.3 tRNA-Arg-CCT compare
Pf1N1B4_733 -0.9 -1.4 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_5690 -0.9 -2.3 Putative TEGT family carrier/transport protein compare
Pf1N1B4_652 -0.8 -5.9 Sensory box histidine kinase compare
Pf1N1B4_4024 -0.8 -1.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3413 -0.8 -1.3 Transcriptional regulator, LysR family compare
Pf1N1B4_5659 -0.8 -5.8 NfuA Fe-S protein maturation compare
Pf1N1B4_1458 -0.8 -4.8 Probable transcription regulator Mig-14 compare
Pf1N1B4_5668 -0.8 -2.0 Peptidase, U7 family compare
Pf1N1B4_4065 -0.8 -3.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_4603 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_1402 -0.8 -2.5 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf1N1B4_1315 -0.8 -2.3 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_4613 -0.8 -2.3 FIG00953934: hypothetical protein compare
Pf1N1B4_6041 -0.8 -1.4 Carbon storage regulator compare
Pf1N1B4_448 -0.8 -1.3 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_4901 -0.8 -2.5 ABC-type protease exporter, ATP-binding component PrtD/AprD compare
Pf1N1B4_5275 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_3985 -0.8 -1.7 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_967 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_2975 -0.8 -1.2 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_5402 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_5349 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_327 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_5925 -0.8 -6.2 hypothetical protein compare
Pf1N1B4_5005 -0.7 -1.4 LysR family transcriptional regulator STM2281 compare
Pf1N1B4_164 -0.7 -1.6 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_3466 -0.7 -2.0 FIG00955605: hypothetical protein compare
Pf1N1B4_1668 -0.7 -3.1 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_4481 -0.7 -1.6 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_6004 -0.7 -2.5 tgtA5 cluster protein 1 compare
Pf1N1B4_32 -0.7 -2.0 Transcriptional regulator, TetR family compare
Pf1N1B4_4318 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_234 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_5972 -0.7 -1.8 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf1N1B4_4293 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_49 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_1625 -0.7 -2.1 FIG00956267: hypothetical protein compare
Pf1N1B4_5813 -0.7 -1.6 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
Pf1N1B4_5926 -0.7 -5.5 hypothetical protein compare
Pf1N1B4_3191 -0.7 -1.6 FIG00953505: hypothetical protein compare
Pf1N1B4_974 -0.7 -1.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_3983 -0.7 -2.2 cI compare
Pf1N1B4_3006 -0.7 -3.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_3692 -0.7 -1.7 Chaperone protein HtpG compare
Pf1N1B4_4433 -0.7 -1.0 FIG035246: DoxX family protein compare
Pf1N1B4_4213 -0.7 -3.1 Potassium channel protein compare
Pf1N1B4_3595 -0.7 -1.1 Flagellin protein FlaG compare
Pf1N1B4_3143 -0.7 -1.9 RecA protein compare
Pf1N1B4_2380 -0.7 -6.2 Cytochrome B561 compare
Pf1N1B4_3590 -0.7 -4.5 hypothetical protein compare
Pf1N1B4_1 -0.7 -1.1 Colicin V production protein compare
Pf1N1B4_3887 -0.7 -1.4 CAAX amino terminal protease family protein compare
Pf1N1B4_2929 -0.7 -2.5 COG1683: Uncharacterized conserved protein / FIG143828: Hypothetical protein YbgA compare
Pf1N1B4_2924 -0.7 -1.8 FIG00955589: hypothetical protein compare
Pf1N1B4_1561 -0.7 -1.9 FIG00954300: hypothetical protein compare
Pf1N1B4_2853 -0.7 -1.3 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_4814 -0.7 -1.6 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf1N1B4_324 -0.7 -1.1 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_4729 -0.7 -1.3 Hemolysin-type calcium-binding region compare
Pf1N1B4_2189 -0.7 -2.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_3011 -0.7 -1.8 Tyrosine recombinase XerD compare
Pf1N1B4_2048 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_5039 -0.7 -1.7 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf1N1B4_336 -0.7 -3.9 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_2381 -0.7 -5.7 Protein yceI precursor compare
Pf1N1B4_335 -0.7 -3.5 Glycosyltransferase compare
Pf1N1B4_4427 -0.7 -2.7 Glutamate transport membrane-spanning protein compare
Pf1N1B4_3709 -0.7 -2.1 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_201 -0.7 -1.6 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf1N1B4_5797 -0.7 -1.8 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25) compare
Pf1N1B4_5583 -0.7 -1.2 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf1N1B4_4765 -0.6 -1.5 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_3328 -0.6 -1.3 Rhodanese-like domain protein compare
Pf1N1B4_2682 -0.6 -1.4 Antiholin-like protein LrgA compare
Pf1N1B4_4486 -0.6 -1.7 Outer membrane protein (porin) compare
Pf1N1B4_1463 -0.6 -4.1 hypothetical protein compare
Pf1N1B4_4731 -0.6 -1.5 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_2552 -0.6 -2.0 OsmC/Ohr family protein compare
Pf1N1B4_1003 -0.6 -1.7 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4418 -0.6 -1.8 hypothetical protein compare
Pf1N1B4_3168 -0.6 -1.3 AmpG permease compare
Pf1N1B4_5976 -0.6 -1.3 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) compare
Pf1N1B4_65 -0.6 -3.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf1N1B4_5312 -0.6 -2.3 Putative activity regulator of membrane protease YbbK compare
Pf1N1B4_4617 -0.6 -2.2 hypothetical protein compare
Pf1N1B4_1570 -0.6 -2.5 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_4250 -0.6 -1.5 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_3909 -0.6 -1.3 Cell division inhibitor-related protein compare
Pf1N1B4_4833 -0.6 -1.4 DNA-binding response regulator, LuxR family compare
Pf1N1B4_4594 -0.6 -1.3 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_1055 -0.6 -1.4 Phosphate acetyltransferase (EC 2.3.1.8) compare
Pf1N1B4_3638 -0.6 -2.2 FIG00955434: hypothetical protein compare
Pf1N1B4_4327 -0.6 -3.1 Spermidine/putrescine-binding periplasmic protein compare
Pf1N1B4_3461 -0.6 -2.0 hypothetical protein compare
Pf1N1B4_5333 -0.6 -2.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in nophagecontrol experiments