Experiment set12S710 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Time16-nophage

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_899 +1.3 3.9 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_4253 +1.1 2.7 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_4108 +1.1 2.9 Hydrolase, alpha/beta fold family compare
Pf1N1B4_4422 +1.0 2.6 ABC transporter amino acid-binding protein compare
Pf1N1B4_1330 +0.9 3.7 hypothetical protein compare
Pf1N1B4_1837 +0.9 1.9 Osmotically inducible protein C compare
Pf1N1B4_2621 +0.9 2.1 PspA/IM30 family protein compare
Pf1N1B4_5949 +0.9 1.7 Phosphomannomutase (EC 5.4.2.8) compare
Pf1N1B4_5904 +0.9 1.8 FIG00955320: hypothetical protein compare
Pf1N1B4_2075 +0.9 2.4 ABC-type antimicrobial peptide transport system, permease component compare
Pf1N1B4_4446 +0.9 1.9 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_5995 +0.8 1.9 Transporter, MFS superfamily compare
Pf1N1B4_115 +0.8 1.1 Membrane protein mosC compare
Pf1N1B4_3134 +0.8 1.7 probable tail fiber assembly-like protein compare
Pf1N1B4_4778 +0.8 3.0 NADH pyrophosphatase (EC 3.6.1.22) compare
Pf1N1B4_381 +0.8 2.1 hypothetical protein compare
Pf1N1B4_2958 +0.8 1.8 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_4482 +0.8 2.3 FIG146518: Zn-dependent hydrolases, including glyoxylases compare
Pf1N1B4_4824 +0.8 2.0 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_5309 +0.8 3.6 hypothetical protein compare
Pf1N1B4_4761 +0.8 2.4 hypothetical protein compare
Pf1N1B4_339 +0.7 1.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_218 +0.7 4.6 Periplasmic binding protein compare
Pf1N1B4_3119 +0.7 2.5 Holin compare
Pf1N1B4_4397 +0.7 1.9 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_4527 +0.7 2.5 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_567 +0.7 1.6 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_1993 +0.7 1.2 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_4139 +0.7 1.6 Transcriptional regulator, MerR family compare
Pf1N1B4_1833 +0.7 2.6 FIG00953718: hypothetical protein compare
Pf1N1B4_695 +0.7 2.1 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_138 +0.7 2.1 Putative dipeptidase, pyoverdin biosynthesis PvdM compare
Pf1N1B4_4573 +0.7 3.0 transporter, LysE family compare
Pf1N1B4_4711 +0.6 2.7 hypothetical protein compare
Pf1N1B4_5322 +0.6 1.8 hypothetical protein compare
Pf1N1B4_2469 +0.6 2.6 Glutathione S-transferase family protein compare
Pf1N1B4_4835 +0.6 1.2 Carbon starvation protein A compare
Pf1N1B4_2366 +0.6 2.5 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf1N1B4_4972 +0.6 1.8 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_345 +0.6 1.1 Integration host factor beta subunit compare
Pf1N1B4_3722 +0.6 2.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_4590 +0.6 1.5 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_5906 +0.6 1.7 Esterase/lipase compare
Pf1N1B4_322 +0.6 1.4 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_2713 +0.6 1.7 FIG00955339: hypothetical protein compare
Pf1N1B4_5919 +0.6 3.0 Signal transduction response regulator / Tetratricopeptide repeat-containing protein compare
Pf1N1B4_4920 +0.6 2.1 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_1819 +0.6 2.5 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_4516 +0.6 1.9 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_3975 +0.6 1.4 Transcriptional regulator, IclR family compare
Pf1N1B4_3501 +0.6 3.2 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_232 +0.6 1.7 DNA-binding response regulator, LuxR family compare
Pf1N1B4_5854 +0.6 2.4 FIG00960144: hypothetical protein compare
Pf1N1B4_5371 +0.6 1.4 hypothetical protein compare
Pf1N1B4_5737 +0.6 1.8 Nitrate/nitrite transporter compare
Pf1N1B4_1584 +0.6 1.3 Histidine ABC transporter, permease protein (TC 3.A.1) compare
Pf1N1B4_3802 +0.6 1.3 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_5095 +0.6 1.7 hypothetical protein compare
Pf1N1B4_4969 +0.6 1.3 FIG00956189: hypothetical protein compare
Pf1N1B4_4358 +0.6 1.4 Acetyltransferase, GNAT family compare
Pf1N1B4_5370 +0.6 1.4 hypothetical protein compare
Pf1N1B4_4001 +0.6 1.6 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_3634 +0.6 2.1 CheW domain protein compare
Pf1N1B4_756 +0.6 1.3 hypothetical protein compare
Pf1N1B4_176 +0.6 2.5 Acetylpolyamine aminohydrolase compare
Pf1N1B4_1782 +0.5 1.6 hypothetical protein compare
Pf1N1B4_3069 +0.5 2.0 FIG00954614: hypothetical protein compare
Pf1N1B4_3578 +0.5 2.2 Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45) compare
Pf1N1B4_3750 +0.5 1.8 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel compare
Pf1N1B4_1998 +0.5 2.6 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf1N1B4_4118 +0.5 1.7 Cyn operon transcriptional activator compare
Pf1N1B4_576 +0.5 2.4 hypothetical protein compare
Pf1N1B4_4257 +0.5 1.4 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_5278 +0.5 1.0 hypothetical protein compare
Pf1N1B4_3234 +0.5 2.2 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf1N1B4_5860 +0.5 1.3 Two-component response regulator compare
Pf1N1B4_2681 +0.5 2.7 MaoC-like domain protein compare
Pf1N1B4_72 +0.5 1.2 Transcriptional regulator, LysR family compare
Pf1N1B4_5984 +0.5 2.6 FIG005548: transport protein compare
Pf1N1B4_4999 +0.5 1.6 Sugar diacid utilization regulator SdaR compare
Pf1N1B4_5753 +0.5 1.6 putative membrane protein compare
Pf1N1B4_2823 +0.5 1.4 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_535 +0.5 2.2 FIG00953341: hypothetical protein compare
Pf1N1B4_4173 +0.5 2.2 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative compare
Pf1N1B4_384 +0.5 1.2 proteinase inhibitor compare
Pf1N1B4_4145 +0.5 0.8 hypothetical protein compare
Pf1N1B4_4801 +0.5 2.1 Polysaccharide deacetylase compare
Pf1N1B4_4158 +0.5 2.5 FIG00955149: hypothetical protein compare
Pf1N1B4_2874 +0.5 1.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_5831 +0.5 2.2 SAM-dependent methyltransferases compare
Pf1N1B4_3525 +0.5 1.1 hydrolase, alpha/beta fold family compare
Pf1N1B4_4855 +0.5 1.1 Response regulator compare
Pf1N1B4_4412 +0.5 1.5 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) compare
Pf1N1B4_5334 +0.5 1.5 hypothetical protein compare
Pf1N1B4_5979 +0.5 1.6 Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-) compare
Pf1N1B4_5814 +0.5 1.4 putative membrane protein compare
Pf1N1B4_5045 +0.5 1.7 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
Pf1N1B4_4887 +0.5 1.5 Pirin compare
Pf1N1B4_4819 +0.5 2.0 Multidrug resistance protein B compare
Pf1N1B4_1804 +0.5 3.2 Predicted regulator PutR for proline utilization, GntR family compare
Pf1N1B4_1340 +0.5 1.5 ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component compare
Pf1N1B4_2145 +0.5 1.1 Translation initiation inhibitor compare
Pf1N1B4_1707 +0.5 2.0 Efflux membrane fusion protein, RND family compare
Pf1N1B4_4166 +0.5 1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_5293 +0.5 1.8 hypothetical protein compare
Pf1N1B4_1979 +0.5 2.0 HflK protein compare
Pf1N1B4_6028 +0.5 1.6 FIG00954052: hypothetical protein compare
Pf1N1B4_5311 +0.5 1.1 hypothetical protein compare
Pf1N1B4_2833 +0.5 1.8 Benzoate transport protein compare
Pf1N1B4_2135 +0.5 2.4 Beta-fimbriae probable major subunit compare
Pf1N1B4_806 +0.5 2.4 hypothetical protein compare
Pf1N1B4_5864 +0.5 1.1 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_2814 +0.5 2.2 Type IV fimbrial biogenesis protein PilX compare
Pf1N1B4_407 +0.5 1.2 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_3573 +0.5 2.4 Flagellar hook-associated protein FlgK compare
Pf1N1B4_5838 +0.5 1.0 FIG00956589: hypothetical protein compare
Pf1N1B4_1901 +0.5 2.0 Putative NADH-flavin reductase compare
Pf1N1B4_2417 +0.5 1.3 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_3813 +0.5 2.3 Homoserine kinase (EC 2.7.1.39) compare
Pf1N1B4_4180 +0.5 2.1 Phosphoribosyl transferase domain protein compare
Pf1N1B4_1388 +0.5 1.8 Azurin compare
Pf1N1B4_5916 +0.5 1.6 Similar to non-heme chloroperoxidase, sll5080 homolog compare
Pf1N1B4_373 +0.5 1.4 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_1143 +0.4 2.5 Phosphodiesterase/alkaline phosphatase D compare
Pf1N1B4_2442 +0.4 1.5 Electron transfer flavoprotein, beta subunit compare
Pf1N1B4_5289 +0.4 1.1 hypothetical protein compare
Pf1N1B4_3368 +0.4 1.2 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_1181 +0.4 1.3 UPF0125 protein yfjF compare
Pf1N1B4_5790 +0.4 1.9 hypothetical protein compare
Pf1N1B4_5938 +0.4 2.2 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf1N1B4_4875 +0.4 1.7 Msl4750 protein compare
Pf1N1B4_5508 +0.4 1.1 hypothetical protein compare
Pf1N1B4_712 +0.4 2.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5018 +0.4 0.9 FIG00962345: hypothetical protein compare
Pf1N1B4_5663 +0.4 1.0 Periplasmic sugar-binding domain protein compare
Pf1N1B4_5965 +0.4 1.8 D-amino-acid oxidase (EC 1.4.3.3) compare
Pf1N1B4_1542 +0.4 1.5 Type IV pilus biogenesis protein PilN compare
Pf1N1B4_776 +0.4 1.6 Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake compare
Pf1N1B4_3630 +0.4 1.5 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_29 +0.4 1.0 FIG00967200: hypothetical protein compare
Pf1N1B4_3905 +0.4 1.8 FIG00953423: hypothetical protein compare
Pf1N1B4_4923 +0.4 2.0 ABC-type dipeptide transport system, periplasmic component compare
Pf1N1B4_4140 +0.4 1.2 hypothetical protein compare
Pf1N1B4_4043 +0.4 1.4 Type II and III secretion system family protein compare
Pf1N1B4_5113 +0.4 1.5 sucrose ABC transporter, permease component 1 (from data) compare
Pf1N1B4_1756 +0.4 1.6 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases compare
Pf1N1B4_3412 +0.4 1.9 CTP synthase (EC 6.3.4.2) compare
Pf1N1B4_132 +0.4 2.5 L-ornithine 5-monooxygenase (EC 1.13.12.-), PvdA of pyoverdin biosynthesis compare
Pf1N1B4_5187 +0.4 0.9 5S RNA compare
Pf1N1B4_5746 +0.4 1.6 FIG139552: Putative protease compare
Pf1N1B4_5724 +0.4 1.2 High-affinity iron permease compare
Pf1N1B4_80 +0.4 2.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf1N1B4_5671 +0.4 2.1 Exoenzymes regulatory protein AepA precursor compare
Pf1N1B4_4657 +0.4 1.1 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_4817 +0.4 1.5 Fe2+-dicitrate sensor, membrane component compare
Pf1N1B4_3472 +0.4 1.9 Flagellar basal-body rod protein FlgB compare
Pf1N1B4_3499 +0.4 0.8 hypothetical protein compare
Pf1N1B4_3520 +0.4 1.6 Phosphohistidine phosphatase SixA compare
Pf1N1B4_3563 +0.4 1.2 hypothetical protein compare
Pf1N1B4_5152 +0.4 1.0 hypothetical protein compare
Pf1N1B4_5769 +0.4 0.9 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_4083 +0.4 1.6 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_88 +0.4 1.4 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf1N1B4_5354 +0.4 1.7 hypothetical protein compare
Pf1N1B4_1485 +0.4 1.7 FIG00963848: hypothetical protein compare
Pf1N1B4_3672 +0.4 1.9 small component of pyruvate transporter (yjcH-like) (from data) compare
Pf1N1B4_4812 +0.4 1.4 Site-specific recombinase, phage integrase family compare
Pf1N1B4_5610 +0.4 1.6 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) compare
Pf1N1B4_5957 +0.4 1.0 Arsenical resistance operon repressor compare
Pf1N1B4_5880 +0.4 0.9 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_3993 +0.4 1.6 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_101 +0.4 1.1 hypothetical protein compare
Pf1N1B4_2984 +0.4 1.8 VacJ-like lipoprotein precursor compare
Pf1N1B4_5353 +0.4 1.5 hypothetical protein compare
Pf1N1B4_4834 +0.4 1.8 Sensor histidine kinase compare
Pf1N1B4_216 +0.4 2.1 Sigma factor PvdS, controling pyoverdin biosynthesis compare
Pf1N1B4_4851 +0.4 0.9 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_1105 +0.4 0.9 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_4448 +0.4 1.1 COGs COG2343 compare
Pf1N1B4_1762 +0.4 1.8 FIG00957387: hypothetical protein compare
Pf1N1B4_6029 +0.4 2.0 uridine nucleosidase (EC 3.2.2.3) (from data) compare
Pf1N1B4_222 +0.4 1.6 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Pf1N1B4_3585 +0.4 1.0 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Pf1N1B4_1246 +0.4 1.2 FIG00954047: hypothetical protein compare
Pf1N1B4_5460 +0.4 1.2 TolA protein compare
Pf1N1B4_3296 +0.4 1.1 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_5070 +0.4 2.1 Aspartate aminotransferase (EC 2.6.1.1) compare
Pf1N1B4_3439 +0.4 1.7 hypothetical protein compare
Pf1N1B4_5609 +0.4 1.3 Sulfopyruvate decarboxylase - beta subunit (EC 4.1.1.79) compare
Pf1N1B4_5722 +0.4 1.0 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_672 +0.4 1.6 FIG00955538: hypothetical protein compare
Pf1N1B4_5619 +0.4 1.1 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_1443 +0.4 1.9 FIG074102: hypothetical protein compare
Pf1N1B4_5962 +0.4 1.4 hypothetical protein compare
Pf1N1B4_2734 +0.4 0.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_1811 +0.4 1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_815 +0.4 1.9 iron-chelator utilization protein compare
Pf1N1B4_4027 +0.4 0.8 hypothetical protein compare
Pf1N1B4_4553 +0.4 1.4 FIG00959354: hypothetical protein compare
Pf1N1B4_3305 +0.4 1.3 Urea carboxylase-related ABC transporter, permease protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in nophagecontrol experiments