Experiment set12S677 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Time16-nophage

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_769 -3.2 -9.6 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_742 -3.1 -10.5 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1408 -3.1 -4.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2272 -3.0 -3.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1307 -2.9 -1.9 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2880 -2.8 -14.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2303 -2.7 -13.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_3697 -2.7 -8.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_15 -2.5 -5.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2548 -2.5 -5.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2547 -2.4 -3.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2384 -2.3 -10.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2545 -2.3 -10.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2282 -2.2 -7.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2878 -2.2 -8.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2005 -2.1 -2.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2850 -2.1 -6.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_6 -2.0 -3.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1065 -2.0 -7.8 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_3812 -2.0 -9.4 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1067 -2.0 -4.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_762 -2.0 -5.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2879 -2.0 -6.8 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2549 -1.9 -4.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1831 -1.9 -6.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1565 -1.9 -2.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_5665 -1.8 -4.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_5383 -1.8 -11.2 hypothetical protein compare
Pf1N1B4_4957 -1.8 -2.0 Transcriptional regulator, TetR family compare
Pf1N1B4_578 -1.8 -4.1 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_847 -1.7 -8.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2112 -1.7 -12.1 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2338 -1.7 -8.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_12 -1.7 -6.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_1554 -1.6 -7.4 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_3802 -1.6 -2.5 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_2489 -1.6 -1.1 Biotin synthesis protein BioH compare
Pf1N1B4_1434 -1.6 -5.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_350 -1.5 -4.5 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_3779 -1.5 -2.4 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_188 -1.5 -2.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_683 -1.5 -3.5 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_3468 -1.5 -1.8 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_1057 -1.5 -3.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_4699 -1.5 -2.4 Multidrug translocase MdfA compare
Pf1N1B4_4225 -1.4 -3.7 transcriptional regulator, AraC family compare
Pf1N1B4_3168 -1.4 -2.4 AmpG permease compare
Pf1N1B4_2337 -1.4 -5.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_3484 -1.4 -4.2 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_2853 -1.4 -2.1 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_4549 -1.4 -2.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_133 -1.4 -3.5 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf1N1B4_4029 -1.3 -2.8 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_1627 -1.3 -2.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_1334 -1.3 -2.1 FIG00955840: hypothetical protein compare
Pf1N1B4_5224 -1.3 -4.8 tRNA-Arg-CCT compare
Pf1N1B4_2526 -1.3 -11.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_4429 -1.3 -2.3 No significant database matches compare
Pf1N1B4_4833 -1.3 -2.7 DNA-binding response regulator, LuxR family compare
Pf1N1B4_4028 -1.3 -2.8 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1906 -1.3 -2.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_1624 -1.3 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_4040 -1.3 -2.3 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1247 -1.2 -3.0 transcriptional regulator, MerR family compare
Pf1N1B4_3152 -1.2 -5.1 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_2858 -1.2 -8.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2008 -1.1 -6.3 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_3011 -1.1 -2.7 Tyrosine recombinase XerD compare
Pf1N1B4_2465 -1.1 -2.5 Two-component response regulator CreB compare
Pf1N1B4_2643 -1.1 -2.3 Predicted zinc-binding protein compare
Pf1N1B4_483 -1.1 -2.5 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_1830 -1.1 -3.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_4857 -1.1 -5.8 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_1458 -1.1 -6.2 Probable transcription regulator Mig-14 compare
Pf1N1B4_3985 -1.1 -2.2 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_1870 -1.1 -2.6 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_5920 -1.1 -2.7 Transcriptional regulator, AraC family compare
Pf1N1B4_2682 -1.1 -2.1 Antiholin-like protein LrgA compare
Pf1N1B4_2105 -1.1 -1.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_4132 -1.1 -1.3 Mobile element protein compare
Pf1N1B4_141 -1.0 -5.5 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
Pf1N1B4_4740 -1.0 -2.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_4024 -1.0 -2.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4104 -1.0 -2.5 Probable transmembrane protein compare
Pf1N1B4_1566 -1.0 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1545 -1.0 -5.9 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_2939 -1.0 -3.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_4039 -1.0 -3.4 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_2023 -1.0 -4.6 L-asparaginase (EC 3.5.1.1) (from data) compare
Pf1N1B4_5519 -1.0 -2.4 hypothetical protein compare
Pf1N1B4_76 -1.0 -1.6 ATP binding protein compare
Pf1N1B4_4929 -1.0 -2.3 Opine oxidase subunit B compare
Pf1N1B4_3081 -1.0 -8.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_4038 -1.0 -1.4 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_5124 -0.9 -3.2 two component transcriptional regulator, LuxR family compare
Pf1N1B4_327 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_652 -0.9 -6.5 Sensory box histidine kinase compare
Pf1N1B4_4051 -0.9 -1.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_2935 -0.9 -2.3 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf1N1B4_3466 -0.9 -2.4 FIG00955605: hypothetical protein compare
Pf1N1B4_656 -0.9 -5.4 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_4748 -0.9 -2.5 transporter, putative compare
Pf1N1B4_5659 -0.9 -6.1 NfuA Fe-S protein maturation compare
Pf1N1B4_2047 -0.9 -2.6 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_322 -0.9 -1.8 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_4187 -0.9 -3.1 Probable signal peptide protein compare
Pf1N1B4_3153 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_4494 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_3595 -0.9 -1.7 Flagellin protein FlaG compare
Pf1N1B4_5955 -0.9 -3.1 Permease of the major facilitator superfamily compare
Pf1N1B4_715 -0.9 -3.2 Iron-regulated protein A precursor compare
Pf1N1B4_2527 -0.9 -6.2 ApaG protein compare
Pf1N1B4_4065 -0.9 -3.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_3325 -0.9 -1.7 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_1335 -0.9 -4.0 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_3605 -0.9 -1.8 Flagellar motor switch protein FliG compare
Pf1N1B4_2114 -0.9 -4.5 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_4030 -0.9 -1.8 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_4004 -0.9 -1.9 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_2854 -0.9 -1.4 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_5925 -0.9 -6.9 hypothetical protein compare
Pf1N1B4_5926 -0.8 -6.8 hypothetical protein compare
Pf1N1B4_1668 -0.8 -3.9 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_298 -0.8 -2.2 Transcription elongation factor GreB compare
Pf1N1B4_3692 -0.8 -1.8 Chaperone protein HtpG compare
Pf1N1B4_1675 -0.8 -2.1 Transcriptional regulator compare
Pf1N1B4_2479 -0.8 -1.8 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_118 -0.8 -2.3 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_3730 -0.8 -2.3 Sodium-dependent transporter compare
Pf1N1B4_3981 -0.8 -1.8 Predicted carboxypeptidase compare
Pf1N1B4_2240 -0.8 -2.9 Transcriptional regulator, AsnC family compare
Pf1N1B4_364 -0.8 -2.4 Rhodanese domain protein UPF0176 compare
Pf1N1B4_2173 -0.8 -2.1 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_65 -0.8 -3.4 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf1N1B4_1568 -0.8 -2.7 Twin-arginine translocation protein TatB compare
Pf1N1B4_4563 -0.8 -1.6 Sulfate transporter compare
Pf1N1B4_1461 -0.8 -2.1 Protein fixF compare
Pf1N1B4_5668 -0.8 -1.9 Peptidase, U7 family compare
Pf1N1B4_4175 -0.8 -2.5 Universal stress protein family 5 compare
Pf1N1B4_412 -0.8 -1.4 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_3590 -0.8 -5.5 hypothetical protein compare
Pf1N1B4_749 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_1403 -0.8 -4.9 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_3006 -0.8 -3.6 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_2684 -0.8 -2.0 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf1N1B4_1561 -0.8 -2.3 FIG00954300: hypothetical protein compare
Pf1N1B4_1329 -0.7 -3.4 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_2039 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_4893 -0.7 -2.2 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf1N1B4_2380 -0.7 -6.6 Cytochrome B561 compare
Pf1N1B4_1315 -0.7 -2.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_1570 -0.7 -2.6 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_4337 -0.7 -1.7 Transcriptional regulator compare
Pf1N1B4_2711 -0.7 -2.1 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf1N1B4_234 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_767 -0.7 -2.8 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_4136 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_3591 -0.7 -5.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_5039 -0.7 -2.5 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf1N1B4_3991 -0.7 -1.4 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_2381 -0.7 -6.2 Protein yceI precursor compare
Pf1N1B4_1212 -0.7 -1.6 Predicted flavin reductase RutF in novel pyrimidine catabolism pathway compare
Pf1N1B4_431 -0.7 -2.6 hypothetical protein compare
Pf1N1B4_4517 -0.7 -1.8 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_2568 -0.7 -1.6 Translation elongation factor Tu compare
Pf1N1B4_731 -0.7 -1.4 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_2280 -0.7 -4.1 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_175 -0.7 -0.9 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_324 -0.7 -1.2 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_5862 -0.7 -2.3 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD compare
Pf1N1B4_5051 -0.7 -1.6 Sensor protein DegS compare
Pf1N1B4_106 -0.7 -2.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1457 -0.7 -4.5 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_5628 -0.7 -1.8 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf1N1B4_3403 -0.7 -1.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_2851 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_3959 -0.7 -2.6 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) compare
Pf1N1B4_1691 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_448 -0.7 -1.0 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_1626 -0.7 -1.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_5505 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_193 -0.7 -2.6 Transporter, LysE family compare
Pf1N1B4_3272 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_2037 -0.7 -2.0 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_1511 -0.7 -1.7 FIG027190: Putative transmembrane protein compare
Pf1N1B4_2823 -0.7 -1.4 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_81 -0.7 -1.7 Putative sulfate permease compare
Pf1N1B4_4301 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_5820 -0.7 -2.2 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_3636 -0.7 -1.6 FIG00953562: hypothetical protein compare
Pf1N1B4_3130 -0.7 -1.6 Bacteriophage protein GP46 compare
Pf1N1B4_4731 -0.6 -1.6 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_855 -0.6 -2.0 FIG021952: putative membrane protein compare
Pf1N1B4_3506 -0.6 -1.8 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1475 -0.6 -2.1 FIG00962376: hypothetical protein compare
Pf1N1B4_3519 -0.6 -2.1 Lipase (EC 3.1.1.3) compare
Pf1N1B4_183 -0.6 -1.8 Major facilitator family transporter compare
Pf1N1B4_3855 -0.6 -2.1 Chromosome partition protein smc compare
Pf1N1B4_3866 -0.6 -1.3 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_2224 -0.6 -1.4 FIG00953390: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in nophagecontrol experiments