Experiment set12S677 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Time16-nophage

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_967 +1.1 2.7 hypothetical protein compare
Pf1N1B4_5949 +1.0 1.8 Phosphomannomutase (EC 5.4.2.8) compare
Pf1N1B4_345 +1.0 1.9 Integration host factor beta subunit compare
Pf1N1B4_4717 +0.9 2.0 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_2195 +0.9 2.8 Small-conductance mechanosensitive channel compare
Pf1N1B4_2453 +0.9 2.4 hypothetical protein compare
Pf1N1B4_4433 +0.9 2.0 FIG035246: DoxX family protein compare
Pf1N1B4_5371 +0.9 2.3 hypothetical protein compare
Pf1N1B4_5322 +0.9 3.2 hypothetical protein compare
Pf1N1B4_5018 +0.8 2.0 FIG00962345: hypothetical protein compare
Pf1N1B4_4446 +0.8 1.8 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_5979 +0.8 2.7 Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-) compare
Pf1N1B4_4358 +0.8 1.7 Acetyltransferase, GNAT family compare
Pf1N1B4_218 +0.8 5.0 Periplasmic binding protein compare
Pf1N1B4_267 +0.8 1.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_5588 +0.8 2.3 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf1N1B4_5435 +0.8 2.5 hypothetical protein compare
Pf1N1B4_2360 +0.7 2.0 hypothetical protein compare
Pf1N1B4_5718 +0.7 2.3 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_5278 +0.7 1.3 hypothetical protein compare
Pf1N1B4_1191 +0.7 2.3 hypothetical protein compare
Pf1N1B4_5292 +0.7 2.0 hypothetical protein compare
Pf1N1B4_814 +0.7 1.4 Transcriptional regulator, PadR family compare
Pf1N1B4_1336 +0.7 1.9 Putative multicopper oxidases compare
Pf1N1B4_5939 +0.7 2.8 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Pf1N1B4_4108 +0.7 1.9 Hydrolase, alpha/beta fold family compare
Pf1N1B4_5370 +0.7 1.6 hypothetical protein compare
Pf1N1B4_4659 +0.7 1.0 Putative outer membrane lipoprotein compare
Pf1N1B4_629 +0.7 2.2 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_5138 +0.7 2.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_4799 +0.7 1.5 Multidrug resistance protein B compare
Pf1N1B4_4872 +0.7 2.0 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_3501 +0.7 3.6 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_1721 +0.7 1.8 DNA-binding heavy metal response regulator compare
Pf1N1B4_4627 +0.7 1.9 FIG00957600: hypothetical protein compare
Pf1N1B4_5378 +0.6 2.6 Phage protein compare
Pf1N1B4_5814 +0.6 2.0 putative membrane protein compare
Pf1N1B4_3331 +0.6 1.8 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_4253 +0.6 1.3 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_5561 +0.6 2.3 hypothetical protein compare
Pf1N1B4_2227 +0.6 1.8 FIG019278: hypothetical protein compare
Pf1N1B4_5675 +0.6 1.0 hypothetical protein compare
Pf1N1B4_516 +0.6 1.9 Sensor histidine kinase compare
Pf1N1B4_4043 +0.6 1.8 Type II and III secretion system family protein compare
Pf1N1B4_2140 +0.6 1.7 FIG00957579: hypothetical protein compare
Pf1N1B4_2485 +0.6 1.7 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy compare
Pf1N1B4_5779 +0.6 1.2 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_4855 +0.6 1.6 Response regulator compare
Pf1N1B4_5357 +0.6 1.4 hypothetical protein compare
Pf1N1B4_2534 +0.6 2.2 DnaJ-like protein DjlA compare
Pf1N1B4_5463 +0.6 2.3 hypothetical protein compare
Pf1N1B4_4801 +0.6 2.4 Polysaccharide deacetylase compare
Pf1N1B4_1583 +0.6 1.9 Histidine ABC transporter, ATP-binding protein (TC 3.A.1) compare
Pf1N1B4_2674 +0.6 1.3 hypothetical protein compare
Pf1N1B4_2145 +0.6 1.3 Translation initiation inhibitor compare
Pf1N1B4_4733 +0.6 1.2 Fap system putative outer membrane protein compare
Pf1N1B4_2975 +0.6 1.3 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_4153 +0.6 2.0 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf1N1B4_403 +0.6 1.5 FIG00965925: hypothetical protein compare
Pf1N1B4_3134 +0.6 1.2 probable tail fiber assembly-like protein compare
Pf1N1B4_5995 +0.6 1.3 Transporter, MFS superfamily compare
Pf1N1B4_4521 +0.6 2.2 Probable transmembrane protein compare
Pf1N1B4_3722 +0.6 2.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1812 +0.6 1.8 Iron siderophore sensor protein compare
Pf1N1B4_3241 +0.6 1.4 hypothetical protein compare
Pf1N1B4_3840 +0.6 2.3 Response regulator NasT compare
Pf1N1B4_5833 +0.6 1.8 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_5349 +0.6 2.1 hypothetical protein compare
Pf1N1B4_5721 +0.6 1.6 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_399 +0.6 1.6 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_1227 +0.6 2.2 FIG00954870: hypothetical protein compare
Pf1N1B4_5082 +0.6 1.8 Capsular polysaccharide synthesis enzyme CpsB compare
Pf1N1B4_1094 +0.5 1.7 FIG005080: Possible exported protein compare
Pf1N1B4_4238 +0.5 1.6 hypothetical protein compare
Pf1N1B4_5354 +0.5 2.1 hypothetical protein compare
Pf1N1B4_4959 +0.5 1.6 Protein containing domains DUF403 compare
Pf1N1B4_4402 +0.5 1.3 SoxH protein, homolog compare
Pf1N1B4_5606 +0.5 2.9 Alpha-ketoglutarate permease compare
Pf1N1B4_4803 +0.5 1.9 ABC-type polar amino acid transport system protein, substrate-binding protein compare
Pf1N1B4_1781 +0.5 0.9 hypothetical protein compare
Pf1N1B4_4920 +0.5 1.8 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_5763 +0.5 1.2 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_5513 +0.5 2.1 hypothetical protein compare
Pf1N1B4_567 +0.5 1.7 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_4515 +0.5 1.8 Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) compare
Pf1N1B4_1613 +0.5 1.6 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_4363 +0.5 3.1 hypothetical protein compare
Pf1N1B4_3750 +0.5 1.8 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel compare
Pf1N1B4_5095 +0.5 1.6 hypothetical protein compare
Pf1N1B4_5854 +0.5 2.8 FIG00960144: hypothetical protein compare
Pf1N1B4_4247 +0.5 2.1 D-aminopeptidase (EC 3.4.11.19) compare
Pf1N1B4_5864 +0.5 1.4 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_5078 +0.5 1.8 Transcriptional regulator PhnF compare
Pf1N1B4_5847 +0.5 2.5 transcriptional activator FtrA compare
Pf1N1B4_4019 +0.5 2.1 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family compare
Pf1N1B4_5293 +0.5 1.9 hypothetical protein compare
Pf1N1B4_5837 +0.5 2.7 Transcriptional regulator, LysR family compare
Pf1N1B4_3767 +0.5 2.4 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf1N1B4_1294 +0.5 1.4 VgrG protein compare
Pf1N1B4_5425 +0.5 1.3 DNA-binding protein HU-beta compare
Pf1N1B4_5071 +0.5 1.1 FIG00959535: hypothetical protein compare
Pf1N1B4_5674 +0.5 1.9 Strictosidine synthase precursor (EC 4.3.3.2) compare
Pf1N1B4_5451 +0.5 1.7 hypothetical protein compare
Pf1N1B4_563 +0.5 1.3 RNA polymerase sigma-70 factor compare
Pf1N1B4_4826 +0.5 1.3 glutamine synthetase family protein compare
Pf1N1B4_5746 +0.5 1.9 FIG139552: Putative protease compare
Pf1N1B4_866 +0.5 1.3 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_2004 +0.5 1.2 putative membrane protein compare
Pf1N1B4_5123 +0.5 2.3 T1SS secreted agglutinin RTX compare
Pf1N1B4_3141 +0.5 1.4 FIG00959768: hypothetical protein compare
Pf1N1B4_114 +0.5 1.1 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_1517 +0.5 2.2 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf1N1B4_3874 +0.5 2.2 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf1N1B4_2214 +0.5 2.1 Transcriptional regulator, GntR family compare
Pf1N1B4_5917 +0.5 1.5 Multimeric flavodoxin WrbA compare
Pf1N1B4_5759 +0.5 1.9 Nitric-oxide reductase subunit B (EC 1.7.99.7) compare
Pf1N1B4_3296 +0.5 1.7 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_1340 +0.5 1.4 ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component compare
Pf1N1B4_3498 +0.5 1.4 FIG00953240: hypothetical protein compare
Pf1N1B4_2925 +0.5 2.0 hypothetical protein compare
Pf1N1B4_3145 +0.5 1.7 Decarboxylase family protein compare
Pf1N1B4_4824 +0.5 1.4 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_1257 +0.5 1.8 Bifunctional protein: zinc-containing alcohol dehydrogenase; quinone oxidoreductase ( NADPH:quinone reductase) (EC 1.1.1.-); Similar to arginate lyase compare
Pf1N1B4_5420 +0.5 1.8 hypothetical protein compare
Pf1N1B4_1118 +0.5 1.2 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4145 +0.5 0.4 hypothetical protein compare
Pf1N1B4_4814 +0.5 0.9 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf1N1B4_5623 +0.5 2.1 hypothetical protein compare
Pf1N1B4_5760 +0.5 1.7 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_4969 +0.5 1.1 FIG00956189: hypothetical protein compare
Pf1N1B4_88 +0.5 1.4 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf1N1B4_564 +0.5 1.6 ABC-type phosphate/phosphonate transport system, periplasmic component compare
Pf1N1B4_4624 +0.5 1.8 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) compare
Pf1N1B4_3525 +0.5 1.3 hydrolase, alpha/beta fold family compare
Pf1N1B4_5385 +0.5 2.0 hypothetical protein compare
Pf1N1B4_1430 +0.5 1.7 Predicted signal transduction protein compare
Pf1N1B4_5756 +0.5 1.1 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf1N1B4_3700 +0.5 1.5 Putative permease often clustered with de novo purine synthesis compare
Pf1N1B4_756 +0.5 1.0 hypothetical protein compare
Pf1N1B4_4835 +0.5 1.1 Carbon starvation protein A compare
Pf1N1B4_4397 +0.5 1.1 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_4481 +0.4 1.3 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_2734 +0.4 1.3 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_707 +0.4 2.2 Nucleoside-diphosphate-sugar epimerases compare
Pf1N1B4_2150 +0.4 0.8 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_491 +0.4 1.6 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly compare
Pf1N1B4_3356 +0.4 1.0 Cyclic nucleotide-binding protein compare
Pf1N1B4_5843 +0.4 1.6 phospholipase/carboxylesterase family protein compare
Pf1N1B4_5460 +0.4 1.3 TolA protein compare
Pf1N1B4_4999 +0.4 1.6 Sugar diacid utilization regulator SdaR compare
Pf1N1B4_5258 +0.4 2.0 hypothetical protein compare
Pf1N1B4_1856 +0.4 2.2 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
Pf1N1B4_1874 +0.4 1.8 FIG00953549: hypothetical protein compare
Pf1N1B4_139 +0.4 1.2 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_1676 +0.4 2.1 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_5835 +0.4 1.5 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_3111 +0.4 0.8 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_1531 +0.4 3.2 Permeases of the major facilitator superfamily compare
Pf1N1B4_3483 +0.4 1.6 Transcriptional regulatory protein PhoP compare
Pf1N1B4_4555 +0.4 1.0 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_4401 +0.4 1.4 Non-heme chloroperoxidase (EC 1.11.1.10) compare
Pf1N1B4_5059 +0.4 0.7 Transcriptional regulator, LysR family compare
Pf1N1B4_92 +0.4 1.6 Porphobilinogen synthase (EC 4.2.1.24) compare
Pf1N1B4_3775 +0.4 0.8 FIG00956876: hypothetical protein compare
Pf1N1B4_126 +0.4 1.1 Pirin compare
Pf1N1B4_2390 +0.4 1.6 probable membrane protein NMA1176 compare
Pf1N1B4_101 +0.4 1.2 hypothetical protein compare
Pf1N1B4_2364 +0.4 2.2 Malonate decarboxylase beta subunit compare
Pf1N1B4_1181 +0.4 1.1 UPF0125 protein yfjF compare
Pf1N1B4_4506 +0.4 1.3 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) compare
Pf1N1B4_1346 +0.4 1.0 Urea ABC transporter, ATPase protein UrtD compare
Pf1N1B4_2147 +0.4 2.0 Putrescine utilization regulator compare
Pf1N1B4_2366 +0.4 1.5 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf1N1B4_5745 +0.4 1.1 FIG139928: Putative protease compare
Pf1N1B4_4979 +0.4 1.3 Transcriptional regulator, AsnC family compare
Pf1N1B4_4533 +0.4 1.2 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_4851 +0.4 1.1 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_5438 +0.4 1.8 hypothetical protein compare
Pf1N1B4_5697 +0.4 1.5 putative exported protein compare
Pf1N1B4_2356 +0.4 1.8 hypothetical protein compare
Pf1N1B4_4118 +0.4 1.0 Cyn operon transcriptional activator compare
Pf1N1B4_4604 +0.4 1.6 FMN reductase, NADPH-dependent compare
Pf1N1B4_5113 +0.4 1.7 sucrose ABC transporter, permease component 1 (from data) compare
Pf1N1B4_2458 +0.4 1.3 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_5880 +0.4 1.3 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_5689 +0.4 1.2 Lactoylglutathione lyase compare
Pf1N1B4_4778 +0.4 1.4 NADH pyrophosphatase (EC 3.6.1.22) compare
Pf1N1B4_150 +0.4 1.6 SyrP-like protein compare
Pf1N1B4_907 +0.4 1.8 Probable glutathione s-transferase protein (EC 2.5.1.18) compare
Pf1N1B4_835 +0.4 1.3 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_4178 +0.4 1.9 Cell division protein FtsH (EC 3.4.24.-) compare
Pf1N1B4_6040 +0.4 2.1 FIG00956858: hypothetical protein compare
Pf1N1B4_2417 +0.4 1.1 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_3997 +0.4 1.8 Uncharacterized protein YtfM precursor compare
Pf1N1B4_4926 +0.4 1.8 ATPase components of various ABC-type transport systems, contain duplicated ATPase compare
Pf1N1B4_5353 +0.4 1.9 hypothetical protein compare
Pf1N1B4_4559 +0.4 2.4 Predicted exporter of the RND superfamily compare
Pf1N1B4_4419 +0.4 1.1 Organosulfonate utilization protein SsuF compare
Pf1N1B4_5409 +0.4 2.1 hypothetical protein compare
Pf1N1B4_1584 +0.4 1.1 Histidine ABC transporter, permease protein (TC 3.A.1) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in nophagecontrol experiments