Experiment set12S676 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Time16-FRS

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_742 -3.4 -8.5 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1408 -3.2 -3.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2303 -2.9 -14.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_3697 -2.9 -8.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2384 -2.8 -9.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_769 -2.6 -8.1 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_578 -2.6 -4.6 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_2880 -2.6 -12.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2548 -2.5 -4.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1 -2.5 -2.4 Colicin V production protein compare
Pf1N1B4_2547 -2.5 -3.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2282 -2.5 -7.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1065 -2.4 -7.5 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_2878 -2.4 -6.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1307 -2.3 -2.2 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3468 -2.3 -2.6 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_5665 -2.3 -3.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2272 -2.3 -3.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_3812 -2.3 -9.4 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_733 -2.2 -2.6 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_1565 -2.2 -2.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2879 -2.1 -6.5 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_683 -2.1 -3.7 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_762 -2.1 -5.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2850 -2.0 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_6 -2.0 -2.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2545 -1.9 -8.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_15 -1.9 -4.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_12 -1.9 -6.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_1434 -1.9 -4.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_4759 -1.9 -2.6 Proteinase inhibitor I11, ecotin precursor compare
Pf1N1B4_2112 -1.8 -12.9 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2338 -1.8 -8.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_4028 -1.8 -3.0 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_2549 -1.7 -4.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_4040 -1.7 -2.5 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_2858 -1.7 -10.3 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4839 -1.7 -1.9 lipoprotein compare
Pf1N1B4_1831 -1.7 -5.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_5242 -1.7 -2.0 hypothetical protein compare
Pf1N1B4_5383 -1.7 -9.5 hypothetical protein compare
Pf1N1B4_1067 -1.6 -3.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_847 -1.6 -7.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_4029 -1.5 -2.8 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_2337 -1.5 -5.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1675 -1.5 -2.9 Transcriptional regulator compare
Pf1N1B4_4039 -1.4 -4.0 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1094 -1.4 -2.7 FIG005080: Possible exported protein compare
Pf1N1B4_5991 -1.4 -2.5 Transcriptional regulator, AraC family compare
Pf1N1B4_350 -1.4 -3.9 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_1475 -1.3 -4.7 FIG00962376: hypothetical protein compare
Pf1N1B4_5402 -1.3 -2.7 hypothetical protein compare
Pf1N1B4_731 -1.3 -2.5 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_1461 -1.3 -2.7 Protein fixF compare
Pf1N1B4_3595 -1.3 -1.5 Flagellin protein FlaG compare
Pf1N1B4_1627 -1.3 -1.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_1830 -1.2 -3.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2008 -1.2 -6.4 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_6041 -1.2 -1.6 Carbon storage regulator compare
Pf1N1B4_4523 -1.2 -2.3 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3443 -1.2 -2.6 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_1458 -1.2 -6.6 Probable transcription regulator Mig-14 compare
Pf1N1B4_2173 -1.2 -2.3 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_3620 -1.2 -2.6 Flagellar biosynthesis protein FliR compare
Pf1N1B4_4393 -1.1 -1.8 Ferredoxin reductase compare
Pf1N1B4_2526 -1.1 -9.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_3613 -1.1 -1.5 hypothetical protein compare
Pf1N1B4_652 -1.1 -7.2 Sensory box histidine kinase compare
Pf1N1B4_1624 -1.1 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_5275 -1.1 -2.1 hypothetical protein compare
Pf1N1B4_76 -1.1 -2.1 ATP binding protein compare
Pf1N1B4_4123 -1.1 -1.8 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_5382 -1.1 -3.1 hypothetical protein compare
Pf1N1B4_4462 -1.1 -1.9 LysR family transcriptional regulator YbhD compare
Pf1N1B4_1472 -1.1 -2.0 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_1566 -1.1 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_3153 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_4250 -1.1 -2.1 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_1463 -1.1 -5.9 hypothetical protein compare
Pf1N1B4_5666 -1.1 -1.8 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2021 -1.1 -1.4 hypothetical protein compare
Pf1N1B4_5815 -1.1 -2.4 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_5926 -1.1 -8.5 hypothetical protein compare
Pf1N1B4_4857 -1.1 -5.1 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_974 -1.0 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_5925 -1.0 -8.3 hypothetical protein compare
Pf1N1B4_2380 -1.0 -9.4 Cytochrome B561 compare
Pf1N1B4_2851 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_5659 -1.0 -6.8 NfuA Fe-S protein maturation compare
Pf1N1B4_656 -1.0 -5.5 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_4699 -1.0 -1.8 Multidrug translocase MdfA compare
Pf1N1B4_197 -1.0 -1.5 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_2856 -1.0 -3.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_5508 -1.0 -2.2 hypothetical protein compare
Pf1N1B4_485 -1.0 -3.2 L-lysine permease compare
Pf1N1B4_3328 -1.0 -1.9 Rhodanese-like domain protein compare
Pf1N1B4_2381 -1.0 -8.5 Protein yceI precursor compare
Pf1N1B4_1545 -1.0 -5.5 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_958 -1.0 -1.0 Stringent starvation protein B compare
Pf1N1B4_4487 -1.0 -1.7 FIG00955631: hypothetical protein compare
Pf1N1B4_1554 -1.0 -4.8 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_5261 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_3928 -1.0 -2.3 FIG00955661: hypothetical protein compare
Pf1N1B4_2823 -1.0 -1.6 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_507 -1.0 -1.4 FIG00956448: hypothetical protein compare
Pf1N1B4_4880 -1.0 -2.5 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family compare
Pf1N1B4_324 -1.0 -1.5 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_3011 -0.9 -2.2 Tyrosine recombinase XerD compare
Pf1N1B4_2047 -0.9 -3.3 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_4838 -0.9 -3.4 Putative lipase compare
Pf1N1B4_4051 -0.9 -1.8 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_4102 -0.9 -2.4 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf1N1B4_4569 -0.9 -1.9 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_1568 -0.9 -3.3 Twin-arginine translocation protein TatB compare
Pf1N1B4_1057 -0.9 -1.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_6045 -0.9 -1.8 CigR (Putative inner membrane protein) compare
Pf1N1B4_2023 -0.9 -4.7 L-asparaginase (EC 3.5.1.1) (from data) compare
Pf1N1B4_3081 -0.9 -8.1 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_4481 -0.9 -1.5 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_5511 -0.9 -2.8 hypothetical protein compare
Pf1N1B4_2307 -0.9 -3.3 LSU m5C1962 methyltransferase RlmI compare
Pf1N1B4_336 -0.9 -4.8 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_4828 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_4833 -0.9 -1.9 DNA-binding response regulator, LuxR family compare
Pf1N1B4_1749 -0.9 -1.6 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_5058 -0.9 -2.1 D-galactarate permease compare
Pf1N1B4_3751 -0.8 -1.7 FIG00953060: hypothetical protein compare
Pf1N1B4_2280 -0.8 -4.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3590 -0.8 -5.5 hypothetical protein compare
Pf1N1B4_1403 -0.8 -5.2 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_5668 -0.8 -1.4 Peptidase, U7 family compare
Pf1N1B4_1668 -0.8 -3.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_5927 -0.8 -7.7 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_3710 -0.8 -2.8 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf1N1B4_4065 -0.8 -3.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_3152 -0.8 -2.5 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_4309 -0.8 -2.8 Translation elongation factor Tu compare
Pf1N1B4_4847 -0.8 -2.0 Various polyols ABC transporter, ATP-binding component compare
Pf1N1B4_4256 -0.8 -1.9 Probable transmembrane protein compare
Pf1N1B4_5301 -0.8 -3.4 hypothetical protein compare
Pf1N1B4_1334 -0.8 -1.4 FIG00955840: hypothetical protein compare
Pf1N1B4_2682 -0.8 -1.6 Antiholin-like protein LrgA compare
Pf1N1B4_2037 -0.8 -2.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_4866 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_4993 -0.8 -2.2 Arabinose efflux permease compare
Pf1N1B4_1570 -0.8 -3.0 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_3709 -0.8 -2.2 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_3160 -0.8 -2.8 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase compare
Pf1N1B4_5888 -0.8 -1.2 probable polysaccharide biosynthesis protein compare
Pf1N1B4_3176 -0.8 -2.4 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_602 -0.8 -1.7 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_3985 -0.8 -1.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_4604 -0.8 -2.2 FMN reductase, NADPH-dependent compare
Pf1N1B4_5542 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_2983 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_3121 -0.8 -2.9 FIG111678: IS, phage, Tn; Transposon-related functions compare
Pf1N1B4_483 -0.8 -1.8 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_4275 -0.7 -2.3 Inosose dehydratase (EC 4.2.1.44) compare
Pf1N1B4_846 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_3403 -0.7 -2.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_1625 -0.7 -2.0 FIG00956267: hypothetical protein compare
Pf1N1B4_4301 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_2283 -0.7 -1.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_4177 -0.7 -1.1 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_5699 -0.7 -1.4 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_5013 -0.7 -1.3 Cointegrate resolution protein T compare
Pf1N1B4_3907 -0.7 -1.7 FIG00953287: hypothetical protein compare
Pf1N1B4_2776 -0.7 -1.8 Transcriptional regulator, GntR family compare
Pf1N1B4_1235 -0.7 -2.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_5709 -0.7 -2.0 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_4900 -0.7 -1.5 Alkaline proteinase inhibitor precursor compare
Pf1N1B4_5310 -0.7 -3.0 hypothetical protein compare
Pf1N1B4_3591 -0.7 -4.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_644 -0.7 -1.3 Cold shock protein CspC compare
Pf1N1B4_1906 -0.7 -1.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_1750 -0.7 -1.1 Death on curing protein, Doc toxin compare
Pf1N1B4_2048 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_4450 -0.7 -2.4 Choline dehydrogenase (EC 1.1.99.1) compare
Pf1N1B4_5089 -0.7 -1.9 Exopolysaccharide production protein ExoQ compare
Pf1N1B4_4901 -0.7 -1.7 ABC-type protease exporter, ATP-binding component PrtD/AprD compare
Pf1N1B4_4100 -0.7 -1.9 probable transmembrane protein compare
Pf1N1B4_58 -0.7 -3.5 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_4038 -0.7 -1.0 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_1722 -0.7 -3.5 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_431 -0.7 -2.4 hypothetical protein compare
Pf1N1B4_5620 -0.7 -1.5 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_526 -0.7 -2.1 Undecaprenyl pyrophosphate synthase compare
Pf1N1B4_959 -0.7 -5.5 Stringent starvation protein A compare
Pf1N1B4_1691 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_1069 -0.7 -2.8 YrbA protein compare
Pf1N1B4_3005 -0.7 -4.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf1N1B4_4352 -0.7 -1.6 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_4888 -0.7 -2.2 UvrD/REP helicase family protein compare
Pf1N1B4_1335 -0.7 -3.3 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_2949 -0.7 -0.7 FIG00956396: hypothetical protein compare
Pf1N1B4_3973 -0.7 -2.0 ABC-type spermidine/putrescine transport system, permease component I compare
Pf1N1B4_3965 -0.7 -1.4 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_609 -0.7 -1.9 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_2527 -0.7 -4.8 ApaG protein compare
Pf1N1B4_1485 -0.7 -1.9 FIG00963848: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in phagefrs experiments