Experiment set12S667 for Rhodanobacter denitrificans FW104-10B01

Compare to:

S5-T1

200 most important genes:

  gene name fitness t score description  
LRK54_RS02365 -2.9 -2.7 ABC transporter ATP-binding protein compare
LRK54_RS12725 -2.5 -10.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
LRK54_RS00490 -2.0 -1.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
LRK54_RS06875 -1.8 -1.2 YiiD C-terminal domain-containing protein compare
LRK54_RS04820 -1.8 -1.2 GspH/FimT family pseudopilin compare
LRK54_RS05500 -1.7 -3.2 hypothetical protein compare
LRK54_RS12055 -1.6 -1.1 dipeptide epimerase compare
LRK54_RS17135 -1.6 -0.9 hypothetical protein compare
LRK54_RS04590 -1.6 -1.5 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
LRK54_RS04545 -1.4 -4.1 hemin uptake protein HemP compare
LRK54_RS10925 -1.4 -0.9 cell division ATP-binding protein FtsE compare
LRK54_RS02395 -1.3 -1.2 acetylornithine deacetylase compare
LRK54_RS09345 -1.3 -1.1 ATP-binding protein compare
LRK54_RS12135 -1.2 -7.0 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
LRK54_RS02815 -1.2 -1.5 hypothetical protein compare
LRK54_RS05110 -1.2 -0.6 glycosyltransferase family 4 protein compare
LRK54_RS15555 -1.1 -1.3 YciI family protein compare
LRK54_RS03700 -1.1 -1.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
LRK54_RS04100 -1.1 -1.0 ATP-binding cassette domain-containing protein compare
LRK54_RS04365 -1.1 -0.7 H-NS histone family protein compare
LRK54_RS11565 -1.1 -1.5 anthranilate phosphoribosyltransferase compare
LRK54_RS10195 -1.0 -1.6 hypothetical protein compare
LRK54_RS15325 -1.0 -0.5 hypothetical protein compare
LRK54_RS13980 -1.0 -2.6 molybdenum cofactor guanylyltransferase compare
LRK54_RS13470 -1.0 -3.5 flagellar export chaperone FliS compare
LRK54_RS15925 -1.0 -1.2 carboxymuconolactone decarboxylase family protein compare
LRK54_RS13970 -1.0 -1.7 MoaD/ThiS family protein compare
LRK54_RS13545 -1.0 -3.4 flagellar type III secretion system pore protein FliP compare
LRK54_RS07675 -1.0 -2.6 CPBP family intramembrane metalloprotease compare
LRK54_RS08335 -0.9 -2.3 MbcA/ParS/Xre antitoxin family protein compare
LRK54_RS15040 -0.9 -2.1 glutaredoxin 3 compare
LRK54_RS05770 -0.9 -5.9 energy transducer TonB compare
LRK54_RS04940 -0.9 -1.7 zinc ribbon domain-containing protein compare
LRK54_RS05710 -0.9 -6.5 pyridoxal-phosphate dependent enzyme compare
LRK54_RS11585 -0.9 -7.0 cAMP-activated global transcriptional regulator CRP compare
LRK54_RS16735 -0.9 -4.6 endopeptidase La compare
LRK54_RS00175 -0.8 -0.7 transposase compare
LRK54_RS17835 -0.8 -1.9 mercuric ion transporter MerT compare
LRK54_RS16400 -0.8 -3.0 glutathione S-transferase family protein compare
LRK54_RS17640 -0.8 -1.4 PepSY domain-containing protein compare
LRK54_RS14815 -0.8 -2.6 beta-ketoacyl-ACP reductase compare
LRK54_RS05195 -0.8 -1.8 sigma-70 family RNA polymerase sigma factor compare
LRK54_RS02955 -0.8 -1.8 efflux transporter outer membrane subunit compare
LRK54_RS15550 -0.8 -1.8 alkyl hydroperoxide reductase compare
LRK54_RS06030 -0.8 -1.8 phage baseplate assembly protein V compare
LRK54_RS11375 -0.8 -2.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS10330 -0.8 -1.5 3-isopropylmalate dehydratase small subunit compare
LRK54_RS02065 -0.8 -2.1 GNAT family N-acetyltransferase compare
LRK54_RS16310 -0.8 -2.9 response regulator compare
LRK54_RS06820 -0.8 -0.8 Fis family transcriptional regulator compare
LRK54_RS06370 -0.8 -1.9 benenodin family lasso peptide compare
LRK54_RS13505 -0.8 -2.3 flagellar assembly protein FliH compare
LRK54_RS01930 -0.8 -1.5 hypothetical protein compare
LRK54_RS13340 -0.8 -1.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
LRK54_RS17220 -0.8 -1.2 cbb3-type cytochrome c oxidase subunit 3 compare
LRK54_RS17940 -0.7 -2.3 outer membrane protein assembly factor BamE compare
LRK54_RS10620 -0.7 -1.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
LRK54_RS13635 -0.7 -2.5 response regulator compare
LRK54_RS04540 -0.7 -4.2 hypothetical protein compare
LRK54_RS02945 -0.7 -5.1 response regulator compare
LRK54_RS00630 -0.7 -2.8 RNA chaperone Hfq compare
LRK54_RS14980 -0.7 -2.2 recombinase RecA compare
LRK54_RS12030 -0.7 -3.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
LRK54_RS04265 -0.7 -1.5 YggT family protein compare
LRK54_RS07430 -0.7 -1.7 nuclear transport factor 2 family protein compare
LRK54_RS00410 -0.7 -1.3 polyhydroxyalkanoic acid system family protein compare
LRK54_RS01700 -0.7 -1.2 tRNA pseudouridine(38-40) synthase TruA compare
LRK54_RS12945 -0.7 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS06865 -0.7 -3.4 uroporphyrinogen-III C-methyltransferase compare
LRK54_RS00750 -0.7 -0.9 response regulator transcription factor compare
LRK54_RS01720 -0.7 -0.6 hydroxyacid dehydrogenase compare
LRK54_RS10555 -0.7 -2.4 GIY-YIG nuclease family protein compare
LRK54_RS14995 -0.7 -1.4 carbon storage regulator CsrA compare
LRK54_RS05660 -0.7 -4.6 PLP-dependent aspartate aminotransferase family protein compare
LRK54_RS15780 -0.7 -1.6 2'-5' RNA ligase family protein compare
LRK54_RS13405 -0.7 -1.6 flagellar basal body rod protein FlgB compare
LRK54_RS00905 -0.7 -1.6 cysteine synthase A compare
LRK54_RS02020 -0.7 -1.1 DUF2058 domain-containing protein compare
LRK54_RS09945 -0.7 -1.6 class I SAM-dependent methyltransferase compare
LRK54_RS02600 -0.7 -2.2 hypothetical protein compare
LRK54_RS03750 -0.7 -2.0 DUF2069 domain-containing protein compare
LRK54_RS07985 -0.7 -1.8 ATP-binding protein compare
LRK54_RS13800 -0.6 -3.7 DUF1631 domain-containing protein compare
LRK54_RS01800 -0.6 -1.0 dCTP deaminase compare
LRK54_RS03755 -0.6 -2.0 hypothetical protein compare
LRK54_RS13575 -0.6 -2.3 P-loop NTPase compare
LRK54_RS02475 -0.6 -3.6 TRZ/ATZ family hydrolase compare
LRK54_RS00430 -0.6 -0.7 NUDIX hydrolase compare
LRK54_RS16935 -0.6 -4.4 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS11805 -0.6 -2.9 ATP-dependent DNA helicase RecG compare
LRK54_RS00575 -0.6 -0.8 hypothetical protein compare
LRK54_RS06355 -0.6 -3.1 hypothetical protein compare
LRK54_RS16815 -0.6 -0.7 hypothetical protein compare
LRK54_RS11570 -0.6 -1.4 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS00305 -0.6 -2.8 asparagine synthase B compare
LRK54_RS16930 -0.6 -3.2 hypothetical protein compare
LRK54_RS13440 -0.6 -1.8 flagellar basal body P-ring protein FlgI compare
LRK54_RS13625 -0.6 -0.9 flagellar hook-length control protein FliK compare
LRK54_RS15070 -0.6 -3.1 PhoH family protein compare
LRK54_RS13790 -0.6 -0.8 DUF3301 domain-containing protein compare
LRK54_RS12200 -0.6 -2.8 division/cell wall cluster transcriptional repressor MraZ compare
LRK54_RS13555 -0.6 -1.6 flagellar biosynthetic protein FliR compare
LRK54_RS02950 -0.6 -5.1 sensor histidine kinase compare
LRK54_RS03835 -0.6 -1.8 RNA polymerase sigma factor compare
LRK54_RS00245 -0.6 -2.6 translesion DNA synthesis-associated protein ImuA compare
LRK54_RS15435 -0.6 -1.9 LysR substrate-binding domain-containing protein compare
LRK54_RS16945 -0.6 -1.2 sigma-E factor negative regulatory protein compare
LRK54_RS02970 -0.6 -2.0 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK54_RS03185 -0.6 -1.4 phosphoglycerate dehydrogenase compare
LRK54_RS15015 -0.6 -2.5 Ppx/GppA family phosphatase compare
LRK54_RS15255 -0.6 -4.3 methylcrotonoyl-CoA carboxylase compare
LRK54_RS02435 -0.6 -4.5 TonB-dependent siderophore receptor compare
LRK54_RS02960 -0.6 -4.6 ABC transporter permease compare
LRK54_RS12975 -0.6 -2.2 hemolysin family protein compare
LRK54_RS15645 -0.6 -1.4 MarR family transcriptional regulator compare
LRK54_RS09365 -0.6 -2.3 FecR family protein compare
LRK54_RS07775 -0.6 -0.8 MarR family transcriptional regulator compare
LRK54_RS10065 -0.6 -0.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS07005 -0.6 -3.8 spore coat protein U domain-containing protein compare
LRK54_RS17935 -0.6 -1.6 RnfH family protein compare
LRK54_RS13615 -0.6 -2.0 DUF2802 domain-containing protein compare
LRK54_RS10570 -0.6 -1.0 accessory factor UbiK family protein compare
LRK54_RS10170 -0.6 -5.0 YbaY family lipoprotein compare
LRK54_RS02695 -0.6 -1.2 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
LRK54_RS16285 -0.5 -1.3 hypothetical protein compare
LRK54_RS05305 -0.5 -3.4 cystathionine gamma-synthase compare
LRK54_RS02280 -0.5 -3.2 ATP-grasp domain-containing protein compare
LRK54_RS02285 -0.5 -2.0 hydroxymethylglutaryl-CoA lyase compare
LRK54_RS16350 -0.5 -0.9 helix-turn-helix domain-containing protein compare
LRK54_RS16470 -0.5 -1.2 metalloregulator ArsR/SmtB family transcription factor compare
LRK54_RS11415 -0.5 -2.9 anthranilate synthase component I compare
LRK54_RS11995 -0.5 -2.8 tRNA-Gly compare
LRK54_RS00190 -0.5 -1.8 hypothetical protein compare
LRK54_RS03365 -0.5 -1.2 polyprenyl synthetase family protein compare
LRK54_RS13455 -0.5 -2.4 flagellar hook-associated protein FlgL compare
LRK54_RS17620 -0.5 -1.0 hypothetical protein compare
LRK54_RS05685 -0.5 -3.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
LRK54_RS16255 -0.5 -0.8 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS13660 -0.5 -2.4 protein-glutamate O-methyltransferase compare
LRK54_RS14140 -0.5 -1.7 cytochrome b/b6 domain-containing protein compare
LRK54_RS13585 -0.5 -0.8 chemotaxis response regulator CheY compare
LRK54_RS13475 -0.5 -1.3 flagellar protein FliT compare
LRK54_RS02400 -0.5 -1.7 argininosuccinate synthase compare
LRK54_RS13570 -0.5 -2.7 flagellar biosynthesis protein FlhF compare
LRK54_RS02705 -0.5 -1.9 nitronate monooxygenase compare
LRK54_RS08790 -0.5 -2.7 GNAT family N-acetyltransferase compare
LRK54_RS14215 -0.5 -2.3 cation-translocating P-type ATPase compare
LRK54_RS16770 -0.5 -2.3 methyltransferase domain-containing protein compare
LRK54_RS13665 -0.5 -2.2 chemoreceptor glutamine deamidase CheD compare
LRK54_RS09250 -0.5 -4.3 rhomboid family intramembrane serine protease compare
LRK54_RS18025 -0.5 -2.6 acyl-CoA-binding protein compare
LRK54_RS12870 -0.5 -3.8 ribosome-associated translation inhibitor RaiA compare
LRK54_RS07215 -0.5 -0.5 cytochrome c4 compare
LRK54_RS00320 -0.5 -0.3 phosphoglycerate mutase compare
LRK54_RS04025 -0.5 -0.3 diacylglycerol kinase compare
LRK54_RS13390 -0.5 -2.8 flagellar basal body P-ring formation protein FlgA compare
LRK54_RS14235 -0.5 -2.9 excinuclease ABC subunit UvrB compare
LRK54_RS04090 -0.5 -3.1 response regulator transcription factor compare
LRK54_RS03035 -0.5 -3.9 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK54_RS03135 -0.5 -1.7 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
LRK54_RS15215 -0.5 -1.6 DUF2059 domain-containing protein compare
LRK54_RS03340 -0.5 -2.6 YajD family HNH nuclease compare
LRK54_RS09865 -0.5 -0.7 CRISPR-associated endonuclease Cas2 compare
LRK54_RS14325 -0.5 -2.2 phosphodiester glycosidase family protein compare
LRK54_RS07735 -0.5 -2.4 metalloregulator ArsR/SmtB family transcription factor compare
LRK54_RS04060 -0.5 -2.1 isoaspartyl peptidase/L-asparaginase compare
LRK54_RS08540 -0.5 -1.9 DUF484 family protein compare
LRK54_RS03905 -0.5 -2.1 glycosyltransferase compare
LRK54_RS11230 -0.5 -0.5 universal stress protein compare
LRK54_RS07275 -0.5 -1.7 dihydrofolate reductase family protein compare
LRK54_RS13560 -0.5 -3.0 flagellar biosynthesis protein FlhB compare
LRK54_RS03015 -0.5 -4.1 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK54_RS14095 -0.5 -2.1 cyclic nucleotide-binding domain-containing protein compare
LRK54_RS07575 -0.4 -1.9 K+/H+ antiporter subunit F compare
LRK54_RS07310 -0.4 -1.6 pteridine reductase compare
LRK54_RS03780 -0.4 -1.2 hypothetical protein compare
LRK54_RS13425 -0.4 -0.9 flagellar basal-body rod protein FlgF compare
LRK54_RS17030 -0.4 -2.3 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase compare
LRK54_RS13515 -0.4 -0.5 flagellar export protein FliJ compare
LRK54_RS02650 -0.4 -2.4 DEAD/DEAH box helicase compare
LRK54_RS11935 -0.4 -1.2 ABC transporter ATP-binding protein compare
LRK54_RS11290 -0.4 -0.4 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS09420 -0.4 -1.4 RNA polymerase sigma factor compare
LRK54_RS08025 -0.4 -1.0 NAD(P)-dependent oxidoreductase compare
LRK54_RS13550 -0.4 -2.3 flagellar biosynthesis protein FliQ compare
LRK54_RS14785 -0.4 -1.3 NADH:flavin oxidoreductase/NADH oxidase compare
LRK54_RS10640 -0.4 -0.5 SCP2 sterol-binding domain-containing protein compare
LRK54_RS13530 -0.4 -1.7 flagellar motor switch protein FliM compare
LRK54_RS04210 -0.4 -1.0 YqgE/AlgH family protein compare
LRK54_RS17710 -0.4 -1.4 NADH-quinone oxidoreductase subunit H compare
LRK54_RS17160 -0.4 -0.4 Eco57I restriction-modification methylase domain-containing protein compare
LRK54_RS02610 -0.4 -1.6 BlaI/MecI/CopY family transcriptional regulator compare
LRK54_RS15105 -0.4 -1.5 polynucleotide adenylyltransferase PcnB compare
LRK54_RS13510 -0.4 -2.1 flagellar protein export ATPase FliI compare
LRK54_RS02385 -0.4 -1.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
LRK54_RS13680 -0.4 -1.5 STAS domain-containing protein compare
LRK54_RS10565 -0.4 -1.9 P-II family nitrogen regulator compare
LRK54_RS03770 -0.4 -1.9 hypothetical protein compare
LRK54_RS09745 -0.4 -1.7 hypothetical protein compare
LRK54_RS11970 -0.4 -2.5 nucleotide sugar dehydrogenase compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in phage experiments