Experiment set12S639 for Rhodanobacter denitrificans FW104-10B01

200 most important genes:

gene	name	fitness	t score	description
LRK54_RS02815		-2.7	-1.8	hypothetical protein
LRK54_RS12725		-2.3	-9.4	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
LRK54_RS08775		-2.0	-2.3	GNAT family N-acetyltransferase
LRK54_RS07290		-1.9	-2.2	VanZ family protein
LRK54_RS12135		-1.6	-7.9	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase
LRK54_RS09345		-1.5	-1.0	ATP-binding protein
LRK54_RS02865		-1.5	-1.0	type II toxin-antitoxin system HicA family toxin
LRK54_RS11570		-1.4	-2.2	indole-3-glycerol phosphate synthase TrpC
LRK54_RS17025		-1.4	-1.1	cold-shock protein
LRK54_RS16800		-1.3	-1.5	hypothetical protein
LRK54_RS11725		-1.3	-1.4	PilZ domain-containing protein
LRK54_RS03900		-1.2	-5.9	class I SAM-dependent methyltransferase
LRK54_RS03905		-1.2	-4.1	glycosyltransferase
LRK54_RS10170		-1.2	-10.0	YbaY family lipoprotein
LRK54_RS05310		-1.2	-4.7	homoserine O-succinyltransferase
LRK54_RS06375		-1.1	-2.9	lasso peptide biosynthesis B2 protein
LRK54_RS04545		-1.1	-3.3	hemin uptake protein HemP
LRK54_RS12030		-1.1	-4.0	methylenetetrahydrofolate reductase [NAD(P)H]
LRK54_RS15740		-1.1	-1.4	asparaginase domain-containing protein
LRK54_RS05500		-1.1	-2.3	hypothetical protein
LRK54_RS18105		-1.1	-1.5	DNA oxidative demethylase AlkB
LRK54_RS00875		-1.1	-2.4	hypothetical protein
LRK54_RS10740		-1.1	-1.3	Lrp/AsnC family transcriptional regulator
LRK54_RS13805		-1.0	-2.0	hypothetical protein
LRK54_RS12580		-1.0	-1.6	hypothetical protein
LRK54_RS04190		-1.0	-3.1	response regulator
LRK54_RS06970		-1.0	-2.4	helix-turn-helix transcriptional regulator
LRK54_RS11565		-1.0	-1.4	anthranilate phosphoribosyltransferase
LRK54_RS14655		-0.9	-1.7	peptide-methionine (R)-S-oxide reductase MsrB
LRK54_RS12200		-0.9	-3.7	division/cell wall cluster transcriptional repressor MraZ
LRK54_RS09210		-0.9	-1.7	anhydro-N-acetylmuramic acid kinase
LRK54_RS16285		-0.9	-1.8	hypothetical protein
LRK54_RS06210		-0.9	-1.5	hypothetical protein
LRK54_RS17090		-0.9	-2.0	isochorismatase family protein
LRK54_RS11290		-0.9	-0.8	dihydrolipoyllysine-residue acetyltransferase
LRK54_RS14450		-0.9	-1.7	hypothetical protein
LRK54_RS16830		-0.8	-1.9	hypothetical protein
LRK54_RS00565		-0.8	-1.2	RNA polymerase sigma factor
LRK54_RS05305		-0.8	-4.6	cystathionine gamma-synthase
LRK54_RS02020		-0.8	-1.0	DUF2058 domain-containing protein
LRK54_RS13800		-0.8	-4.3	DUF1631 domain-containing protein
LRK54_RS04540		-0.8	-4.3	hypothetical protein
LRK54_RS05770		-0.8	-5.1	energy transducer TonB
LRK54_RS01800		-0.8	-1.0	dCTP deaminase
LRK54_RS04260		-0.8	-1.7	pyrroline-5-carboxylate reductase
LRK54_RS08335		-0.8	-1.9	MbcA/ParS/Xre antitoxin family protein
LRK54_RS15015		-0.8	-3.0	Ppx/GppA family phosphatase
LRK54_RS14670		-0.8	-0.5	NrsF family protein
LRK54_RS06895		-0.8	-1.0	hotdog fold thioesterase
LRK54_RS11690		-0.8	-1.3	UPF0149 family protein
LRK54_RS17590		-0.8	-2.2	efflux RND transporter periplasmic adaptor subunit
LRK54_RS00025		-0.7	-1.4	cold shock domain-containing protein
LRK54_RS00835		-0.7	-2.4	LysR substrate-binding domain-containing protein
LRK54_RS06745		-0.7	-1.8	mitochondrial fission ELM1 family protein
LRK54_RS12005		-0.7	-2.4	30S ribosomal protein S6--L-glutamate ligase
LRK54_RS04245		-0.7	-1.1	BON domain-containing protein
LRK54_RS17070		-0.7	-2.4	type II toxin-antitoxin system RelE/ParE family toxin
LRK54_RS02470		-0.7	-1.6	YciI family protein
LRK54_RS06820		-0.7	-0.6	Fis family transcriptional regulator
LRK54_RS00410		-0.7	-1.1	polyhydroxyalkanoic acid system family protein
LRK54_RS08380		-0.7	-2.2	type II toxin-antitoxin system HipA family toxin YjjJ
LRK54_RS05600		-0.7	-2.7	hypothetical protein
LRK54_RS05660		-0.7	-4.3	PLP-dependent aspartate aminotransferase family protein
LRK54_RS05940		-0.7	-2.0	hypothetical protein
LRK54_RS08895		-0.7	-1.8	hypothetical protein
LRK54_RS07195		-0.6	-0.8	hypothetical protein
LRK54_RS11560		-0.6	-1.0	aminodeoxychorismate/anthranilate synthase component II
LRK54_RS17620		-0.6	-0.9	hypothetical protein
LRK54_RS17640		-0.6	-1.0	PepSY domain-containing protein
LRK54_RS16735		-0.6	-3.5	endopeptidase La
LRK54_RS16930		-0.6	-2.9	hypothetical protein
LRK54_RS09725		-0.6	-1.0	phosphopantetheine-binding protein
LRK54_RS16825		-0.6	-1.7	hypothetical protein
LRK54_RS06740		-0.6	-2.1	malonic semialdehyde reductase
LRK54_RS03185		-0.6	-1.2	phosphoglycerate dehydrogenase
LRK54_RS11680		-0.6	-1.1	cell division protein ZapA
LRK54_RS16310		-0.6	-2.4	response regulator
LRK54_RS00245		-0.6	-2.5	translesion DNA synthesis-associated protein ImuA
LRK54_RS15200		-0.6	-1.0	AraC family transcriptional regulator
LRK54_RS04615		-0.6	-1.5	transcriptional regulator NrdR
LRK54_RS06360		-0.6	-2.1	GntR family transcriptional regulator
LRK54_RS17855		-0.6	-0.9	(2Fe-2S)-binding protein
LRK54_RS13710		-0.6	-2.8	CBS domain-containing protein
LRK54_RS16810		-0.6	-0.8	hypothetical protein
LRK54_RS18110		-0.6	-2.7	2OG-Fe(II) oxygenase
LRK54_RS15040		-0.6	-1.4	glutaredoxin 3
LRK54_RS05060		-0.6	-0.8	carbohydrate kinase
LRK54_RS00595		-0.6	-2.1	winged helix-turn-helix transcriptional regulator
LRK54_RS10065		-0.6	-0.4	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase
LRK54_RS12975		-0.6	-2.3	hemolysin family protein
LRK54_RS02365		-0.6	-0.9	ABC transporter ATP-binding protein
LRK54_RS06435		-0.6	-4.3	substrate-binding domain-containing protein
LRK54_RS05710		-0.6	-4.2	pyridoxal-phosphate dependent enzyme
LRK54_RS01625		-0.6	-0.9	30S ribosomal protein THX
LRK54_RS13750		-0.6	-2.5	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
LRK54_RS16255		-0.6	-0.9	efflux RND transporter periplasmic adaptor subunit
LRK54_RS15925		-0.6	-0.8	carboxymuconolactone decarboxylase family protein
LRK54_RS01580		-0.6	-2.0	imidazole glycerol phosphate synthase subunit HisF
LRK54_RS14815		-0.6	-1.8	beta-ketoacyl-ACP reductase
LRK54_RS07775		-0.6	-0.8	MarR family transcriptional regulator
LRK54_RS12955		-0.6	-1.5	AI-2E family transporter
LRK54_RS01660		-0.6	-1.6	DUF4399 domain-containing protein
LRK54_RS06575		-0.6	-3.1	thiamine phosphate synthase
LRK54_RS14955		-0.6	-1.7	hypothetical protein
LRK54_RS14980		-0.6	-1.6	recombinase RecA
LRK54_RS05505		-0.6	-2.9	glycine cleavage system protein GcvH
LRK54_RS13620		-0.6	-0.8	hypothetical protein
LRK54_RS10500		-0.6	-1.2	glycerophosphodiester phosphodiesterase
LRK54_RS06355		-0.6	-2.5	hypothetical protein
LRK54_RS06535		-0.5	-4.3	glycerol kinase GlpK
LRK54_RS15215		-0.5	-1.6	DUF2059 domain-containing protein
LRK54_RS09945		-0.5	-1.4	class I SAM-dependent methyltransferase
LRK54_RS02435		-0.5	-3.9	TonB-dependent siderophore receptor
LRK54_RS09560		-0.5	-2.5	carboxymuconolactone decarboxylase family protein
LRK54_RS02825		-0.5	-1.9	sigma-70 family RNA polymerase sigma factor
LRK54_RS16670		-0.5	-2.1	Mth938-like domain-containing protein
LRK54_RS07570		-0.5	-0.9	monovalent cation/H(+) antiporter subunit G
LRK54_RS11805		-0.5	-2.5	ATP-dependent DNA helicase RecG
LRK54_RS13525		-0.5	-2.4	flagellar basal body-associated FliL family protein
LRK54_RS00175		-0.5	-0.5	transposase
LRK54_RS00165		-0.5	-3.1	hypothetical protein
LRK54_RS16150		-0.5	-1.1	cell wall hydrolase
LRK54_RS16935		-0.5	-3.6	bifunctional diguanylate cyclase/phosphodiesterase
LRK54_RS00400		-0.5	-2.7	3-phosphoserine/phosphohydroxythreonine transaminase
LRK54_RS13455		-0.5	-2.5	flagellar hook-associated protein FlgL
LRK54_RS02705		-0.5	-1.6	nitronate monooxygenase
LRK54_RS10555		-0.5	-1.8	GIY-YIG nuclease family protein
LRK54_RS04740		-0.5	-1.9	RDD family protein
LRK54_RS13575		-0.5	-2.1	P-loop NTPase
LRK54_RS00310		-0.5	-2.3	STAS/SEC14 domain-containing protein
LRK54_RS13680		-0.5	-1.7	STAS domain-containing protein
LRK54_RS06600		-0.5	-3.3	NAD(P)-dependent oxidoreductase
LRK54_RS03060		-0.5	-1.5	GNAT family N-acetyltransferase
LRK54_RS02790		-0.5	-3.4	MlaD family protein
LRK54_RS06225		-0.5	-0.7	hypothetical protein
LRK54_RS14095		-0.5	-2.2	cyclic nucleotide-binding domain-containing protein
LRK54_RS00325		-0.5	-2.9	ATP-binding cassette domain-containing protein
LRK54_RS00330		-0.5	-2.0	hypothetical protein
LRK54_RS00625		-0.5	-2.1	GTPase HflX
LRK54_RS02410		-0.5	-1.0	FMN-binding negative transcriptional regulator
LRK54_RS04965		-0.5	-3.4	23S rRNA pseudouridine(1911/1915/1917) synthase RluD
LRK54_RS15080		-0.5	-1.1	glycine cleavage system protein R
LRK54_RS07005		-0.5	-3.1	spore coat protein U domain-containing protein
LRK54_RS07430		-0.5	-1.0	nuclear transport factor 2 family protein
LRK54_RS08575		-0.5	-1.8	diphosphomevalonate decarboxylase
LRK54_RS10355		-0.5	-0.6	threonine synthase
LRK54_RS05195		-0.5	-1.0	sigma-70 family RNA polymerase sigma factor
LRK54_RS14900		-0.5	-2.6	TonB-dependent siderophore receptor
LRK54_RS09300		-0.5	-2.5	NAD(+) diphosphatase
LRK54_RS08630		-0.5	-2.2	YecA family protein
LRK54_RS07865		-0.5	-1.7	GntR family transcriptional regulator
LRK54_RS16855		-0.5	-2.6	hypothetical protein
LRK54_RS02585		-0.5	-1.7	Rid family hydrolase
LRK54_RS00885		-0.5	-1.3	class II fumarate hydratase
LRK54_RS00305		-0.5	-1.8	asparagine synthase B
LRK54_RS06530		-0.5	-4.1	carbohydrate kinase family protein
LRK54_RS06370		-0.5	-1.2	benenodin family lasso peptide
LRK54_RS17900		-0.5	-0.4	4a-hydroxytetrahydrobiopterin dehydratase
LRK54_RS17845		-0.5	-1.5	DUF692 domain-containing protein
LRK54_RS09175		-0.5	-1.1	dUTP diphosphatase
LRK54_RS06380		-0.5	-2.6	asparagine synthase-related protein
LRK54_RS10925		-0.5	-0.4	cell division ATP-binding protein FtsE
LRK54_RS13445		-0.5	-1.3	flagellar assembly peptidoglycan hydrolase FlgJ
LRK54_RS14155		-0.5	-1.2	OsmC family protein
LRK54_RS15165		-0.5	-0.6	enoyl-CoA hydratase-related protein
LRK54_RS01680		-0.5	-1.1	tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data)
LRK54_RS12870		-0.5	-3.6	ribosome-associated translation inhibitor RaiA
LRK54_RS18130		-0.5	-2.3	hypothetical protein
LRK54_RS00630		-0.4	-1.7	RNA chaperone Hfq
LRK54_RS16400		-0.4	-1.7	glutathione S-transferase family protein
LRK54_RS00480		-0.4	-1.7	quaternary ammonium compound efflux SMR transporter SugE
LRK54_RS14790		-0.4	-1.9	pirin family protein
LRK54_RS17335		-0.4	-1.5	hypothetical protein
LRK54_RS04475		-0.4	-2.7	helix-turn-helix domain-containing protein
LRK54_RS08190		-0.4	-1.7	hypothetical protein
LRK54_RS02700		-0.4	-1.5	ribosome silencing factor
LRK54_RS02750		-0.4	-1.0	hypothetical protein
LRK54_RS00020		-0.4	-2.2	hypothetical protein
LRK54_RS00255		-0.4	-2.7	peptide-methionine (R)-S-oxide reductase MsrB
LRK54_RS15665		-0.4	-1.4	SCO family protein
LRK54_RS01610		-0.4	-1.0	ATP phosphoribosyltransferase
LRK54_RS07215		-0.4	-0.5	cytochrome c4
LRK54_RS11935		-0.4	-1.1	ABC transporter ATP-binding protein
LRK54_RS00750		-0.4	-0.5	response regulator transcription factor
LRK54_RS02610		-0.4	-1.3	BlaI/MecI/CopY family transcriptional regulator
LRK54_RS13405		-0.4	-1.0	flagellar basal body rod protein FlgB
LRK54_RS06455		-0.4	-2.6	aspartyl/asparaginyl beta-hydroxylase domain-containing protein
LRK54_RS03750		-0.4	-1.2	DUF2069 domain-containing protein
LRK54_RS14260		-0.4	-0.6	Spx/MgsR family RNA polymerase-binding regulatory protein
LRK54_RS15500		-0.4	-0.5	hypothetical protein
LRK54_RS07460		-0.4	-0.7	hypothetical protein
LRK54_RS15645		-0.4	-1.0	MarR family transcriptional regulator
LRK54_RS10865		-0.4	-2.6	DEAD/DEAH box helicase
LRK54_RS01405		-0.4	-1.2	YdeI/OmpD-associated family protein
LRK54_RS06395		-0.4	-2.2	helix-turn-helix domain-containing protein
LRK54_RS13505		-0.4	-1.3	flagellar assembly protein FliH
LRK54_RS06625		-0.4	-3.0	NAD(P)H-dependent oxidoreductase
LRK54_RS04165		-0.4	-0.8	chemotaxis protein CheW
LRK54_RS10735		-0.4	-3.0	acid phosphatase
LRK54_RS07735		-0.4	-2.1	metalloregulator ArsR/SmtB family transcription factor

Specific Phenotypes

For 1 genes in this experiment