Experiment set12S553 for Paraburkholderia bryophila 376MFSha3.1

Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Group:
Media: + Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Culturing: Burk376_ML3a
By: Marta Torres on 4-Dec-22

Specific Phenotypes

For 8 genes in this experiment

For Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms

SEED Subsystems

Subsystem	#Specific
ABC transporter branched-chain amino acid (TC 3.A.1.4.1)	2
Acetyl-CoA fermentation to Butyrate	1
Isobutyryl-CoA to Propionyl-CoA Module	1
Valine degradation	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Valine, leucine and isoleucine degradation
• Inositol phosphate metabolism
• Propanoate metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
β-alanine degradation II	2	2	1
β-alanine degradation I	2	1	1
glycine betaine degradation III	7	6	2
acrylate degradation I	5	2	1
propanoyl-CoA degradation II	5	2	1
myo-inositol degradation I	7	6	1
2,4-dinitrotoluene degradation	7	1	1
L-valine degradation I	8	5	1
myo-, chiro- and scyllo-inositol degradation	10	6	1