Experiment set12S544 for Paraburkholderia bryophila 376MFSha3.1
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Group: in plantaMedia: + Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Culturing: Burk376_ML3a, pot, at 26 (C), (Solid)
By: Marta Torres on 22-Sep-22
Specific Phenotypes
For 10 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Inositol catabolism | 6 |
| Isobutyryl-CoA to Propionyl-CoA Module | 1 |
| Multidrug Resistance Efflux Pumps | 1 |
| Valine degradation | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Inositol phosphate metabolism
- Pentose and glucuronate interconversions
- Galactose metabolism
- Ascorbate and aldarate metabolism
- Valine, leucine and isoleucine degradation
- 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation
- Phenylalanine metabolism
- Benzoate degradation via hydroxylation
- Streptomycin biosynthesis
- Biphenyl degradation
- Benzoate degradation via CoA ligation
- Propanoate metabolism
- Ethylbenzene degradation
- Nicotinate and nicotinamide metabolism
- Limonene and pinene degradation
- Caprolactam degradation
- Biosynthesis of ansamycins
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| myo-inositol degradation I | 7 | 6 | 6 |
| myo-, chiro- and scyllo-inositol degradation | 10 | 6 | 6 |
| β-alanine degradation II | 2 | 2 | 1 |
| β-alanine degradation I | 2 | 1 | 1 |
| acrylate degradation I | 5 | 2 | 1 |
| propanoyl-CoA degradation II | 5 | 2 | 1 |
| myo-inositol degradation II | 5 | 1 | 1 |
| 2,4-dinitrotoluene degradation | 7 | 1 | 1 |
| L-valine degradation I | 8 | 5 | 1 |
| streptomycin biosynthesis | 18 | 2 | 1 |