Experiment set12S543 for Paraburkholderia bryophila 376MFSha3.1

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Group: in planta
Media: + Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Culturing: Burk376_ML3a, pot, at 26 (C), (Solid)
By: Marta Torres on 22-Sep-22

Specific Phenotypes

For 3 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Paraburkholderia bryophila 376MFSha3.1

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms

SEED Subsystems

Subsystem	#Specific
Experimental tye	1
Heme and Siroheme Biosynthesis	1
Terminal cytochrome O ubiquinol oxidase	1
Terminal cytochrome oxidases	1
Transcription factors bacterial	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Porphyrin and chlorophyll metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
NADH to cytochrome bo oxidase electron transfer I	2	2	1
pyruvate to cytochrome bo oxidase electron transfer	2	2	1
succinate to cytochrome bo oxidase electron transfer	2	2	1
glycerol-3-phosphate to cytochrome bo oxidase electron transfer	2	2	1
proline to cytochrome bo oxidase electron transfer	2	1	1
D-lactate to cytochrome bo oxidase electron transfer	2	1	1
NADH to cytochrome bo oxidase electron transfer II	2	1	1
heme b biosynthesis II (oxygen-independent)	4	3	1
superpathway of heme b biosynthesis from uroporphyrinogen-III	6	4	1
3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)	9	3	1
superpathway of bacteriochlorophyll a biosynthesis	26	6	1