Experiment set12S541 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
H281DRAFT_06067 -5.8 -8.9 tryptophan synthase, beta chain compare
H281DRAFT_04467 -5.8 -8.9 UDP-glucose pyrophosphorylase compare
H281DRAFT_04610 -5.7 -16.1 Fe-S oxidoreductase compare
H281DRAFT_05194 -5.6 -11.5 penicillin-binding protein 1A compare
H281DRAFT_06065 -5.5 -7.5 tryptophan synthase, alpha chain compare
H281DRAFT_02230 -5.4 -3.7 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase compare
H281DRAFT_05714 -5.3 -2.7 anthranilate synthase, component II compare
H281DRAFT_01889 -5.2 -3.6 7-cyano-7-deazaguanine reductase compare
H281DRAFT_05713 -5.0 -7.6 anthranilate phosphoribosyltransferase compare
H281DRAFT_04553 -4.9 -4.8 ketol-acid reductoisomerase compare
H281DRAFT_04974 -4.9 -5.8 aromatic-amino-acid transaminase compare
H281DRAFT_06059 -4.5 -9.6 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_05801 -4.4 -6.0 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_05715 -4.3 -19.4 anthranilate synthase, component I compare
H281DRAFT_05712 -4.3 -5.9 indole-3-glycerol phosphate synthase compare
H281DRAFT_02214 -4.3 -17.4 homoserine O-acetyltransferase compare
H281DRAFT_06546 -4.3 -3.3 hypothetical protein compare
H281DRAFT_01985 -4.1 -9.0 protoheme IX farnesyltransferase compare
H281DRAFT_04026 -4.0 -5.7 3-octaprenyl-4hydroxybenzoate decarboxylase compare
H281DRAFT_02232 -4.0 -7.2 preQ(0) biosynthesis protein QueC compare
H281DRAFT_03926 -4.0 -9.1 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_05620 -4.0 -19.1 glutamate synthase (NADH) large subunit compare
H281DRAFT_03915 -3.9 -3.6 UDPglucose 6-dehydrogenase compare
H281DRAFT_02231 -3.9 -2.0 7-carboxy-7-deazaguanine synthase, Cx14CxxC type compare
H281DRAFT_04635 -3.8 -1.7 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) compare
H281DRAFT_01986 -3.7 -6.3 cytochrome c oxidase assembly protein subunit 15 compare
H281DRAFT_04386 -3.7 -4.4 hypothetical protein compare
H281DRAFT_00286 -3.7 -2.2 transaldolase compare
H281DRAFT_06273 -3.5 -1.5 AmpD protein compare
H281DRAFT_02205 -3.5 -1.5 transcriptional regulator, TraR/DksA family compare
H281DRAFT_04958 -3.5 -5.0 glutamate racemase compare
H281DRAFT_00465 -3.5 -4.5 PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase compare
H281DRAFT_00291 -3.5 -3.1 Cytochrome c553 compare
H281DRAFT_06068 -3.4 -3.6 phosphoribosylanthranilate isomerase compare
H281DRAFT_05621 -3.4 -2.7 glutamate synthase (NADH) small subunit compare
H281DRAFT_02004 -3.4 -3.9 phosphoglycerate mutase compare
H281DRAFT_05469 -3.4 -4.4 transcriptional regulator, IclR family compare
H281DRAFT_05601 -3.3 -3.1 hypothetical protein compare
H281DRAFT_06060 -3.3 -2.3 amidophosphoribosyltransferase compare
H281DRAFT_05746 -3.3 -4.6 chemotaxis protein CheD compare
H281DRAFT_05747 -3.3 -14.6 two-component system, chemotaxis family, response regulator CheB compare
H281DRAFT_00194 -3.2 -2.0 argininosuccinate lyase compare
H281DRAFT_04120 -3.1 -5.0 argininosuccinate synthase compare
H281DRAFT_00390 -3.1 -1.3 Beta-barrel assembly machine subunit BamC compare
H281DRAFT_00860 -3.1 -1.1 phosphoserine phosphatase compare
H281DRAFT_00290 -3.0 -1.9 Cytochrome c553 compare
H281DRAFT_06075 -3.0 -9.4 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_04119 -3.0 -2.9 ornithine carbamoyltransferase compare
H281DRAFT_02000 -2.8 -6.9 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
H281DRAFT_05788 -2.8 -10.8 flagellar protein FliS compare
H281DRAFT_02137 -2.7 -2.6 type I restriction enzyme M protein compare
H281DRAFT_05159 -2.7 -2.4 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
H281DRAFT_04722 -2.7 -1.9 Cell division and transport-associated protein TolQ compare
H281DRAFT_01935 -2.7 -7.6 Tetratricopeptide repeat-containing protein compare
H281DRAFT_06073 -2.7 -4.7 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_04152 -2.6 -12.4 D-arabinitol 4-dehydrogenase compare
H281DRAFT_02036 -2.6 -3.5 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_00518 -2.5 -1.9 Putative negative regulator of RcsB-dependent stress response compare
H281DRAFT_06272 -2.5 -1.1 uncharacterized protein compare
H281DRAFT_02136 -2.5 -1.7 hypothetical protein compare
H281DRAFT_01798 -2.5 -1.8 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_00650 -2.4 -4.9 transcriptional regulator, DeoR family compare
H281DRAFT_01993 -2.4 -10.8 cytochrome c oxidase subunit 1 compare
H281DRAFT_06232 -2.4 -2.3 peptidoglycan synthetase FtsI compare
H281DRAFT_03551 -2.4 -6.2 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor compare
H281DRAFT_05158 -2.3 -4.1 putative urate catabolism protein compare
H281DRAFT_06322 -2.3 -1.5 LPS-assembly lipoprotein compare
H281DRAFT_04671 -2.3 -4.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
H281DRAFT_00468 -2.2 -4.6 dihydrolipoamide dehydrogenase compare
H281DRAFT_06072 -2.2 -6.2 3-isopropylmalate dehydrogenase compare
H281DRAFT_06480 -2.2 -1.6 arginine succinyltransferase compare
H281DRAFT_04391 -2.2 -7.7 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02436 -2.1 -4.7 flagellar hook-associated protein 2 compare
H281DRAFT_05773 -2.1 -7.7 flagellar hook-associated protein 3 FlgL compare
H281DRAFT_04082 -2.1 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_02095 -2.1 -6.0 8-amino-7-oxononanoate synthase compare
H281DRAFT_00902 -2.1 -4.6 peptidyl-prolyl cis-trans isomerase D compare
H281DRAFT_05116 -2.1 -4.7 cell division protein ZapE compare
H281DRAFT_04721 -2.1 -0.9 Cell division and transport-associated protein TolR compare
H281DRAFT_05494 -2.1 -1.1 DNA-binding transcriptional regulator, GntR family compare
H281DRAFT_04710 -2.0 -1.4 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_02530 -2.0 -2.2 transcriptional regulator, IclR family compare
H281DRAFT_02080 -2.0 -6.4 cell division protein FtsN compare
H281DRAFT_03100 -2.0 -3.2 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_01989 -2.0 -3.4 Protein of unknown function (DUF2909) compare
H281DRAFT_05742 -2.0 -8.9 CheA signal transduction histidine kinase compare
H281DRAFT_05646 -2.0 -1.9 hypothetical protein compare
H281DRAFT_04922 -2.0 -1.8 iron complex transport system permease protein compare
H281DRAFT_03615 -1.9 -4.6 hopanoid biosynthesis associated radical SAM protein HpnH compare
H281DRAFT_02571 -1.9 -1.2 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_04390 -1.9 -7.8 ATP-binding cassette, subfamily B compare
H281DRAFT_04687 -1.9 -7.5 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
H281DRAFT_05743 -1.9 -3.0 CheW protein compare
H281DRAFT_05857 -1.9 -4.4 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB compare
H281DRAFT_04515 -1.9 -1.6 RNAse G compare
H281DRAFT_05759 -1.9 -1.8 flagella synthesis protein FlgN compare
H281DRAFT_00841 -1.9 -1.6 hypothetical protein compare
H281DRAFT_00806 -1.8 -1.7 Membrane transporters of cations and cationic drugs compare
H281DRAFT_03292 -1.8 -1.2 Mn-containing catalase compare
H281DRAFT_05980 -1.8 -1.9 Catechol 2,3-dioxygenase compare
H281DRAFT_05705 -1.8 -1.8 hypothetical protein compare
H281DRAFT_04337 -1.8 -2.3 molybdenum cofactor guanylyltransferase (EC 2.7.7.77) compare
H281DRAFT_05876 -1.8 -4.2 transcriptional regulator, TetR family compare
H281DRAFT_04220 -1.7 -5.7 Cytochrome c, mono- and diheme variants compare
H281DRAFT_05772 -1.7 -9.0 flagellar hook-associated protein 1 FlgK conserved
H281DRAFT_02803 -1.7 -1.5 thioredoxin 1 compare
H281DRAFT_05717 -1.7 -7.8 ribulose-5-phosphate 3-epimerase compare
H281DRAFT_00529 -1.7 -2.6 KUP system potassium uptake protein compare
H281DRAFT_00808 -1.7 -3.1 Uncharacterized conserved protein, contains Mth938-like domain compare
H281DRAFT_05856 -1.7 -4.2 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC compare
H281DRAFT_01990 -1.6 -5.6 cytochrome c oxidase subunit 3 compare
H281DRAFT_01994 -1.6 -6.9 cytochrome c oxidase subunit 2 compare
H281DRAFT_03925 -1.6 -4.8 chorismate mutase compare
H281DRAFT_04550 -1.6 -5.7 RNA polymerase, sigma-24 subunit, RpoE compare
H281DRAFT_00608 -1.6 -6.8 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
H281DRAFT_01377 -1.6 -1.2 hypothetical protein compare
H281DRAFT_00512 -1.6 -3.8 hypothetical protein compare
H281DRAFT_03072 -1.6 -3.8 Signal transduction histidine kinase compare
H281DRAFT_04672 -1.6 -3.1 ATP-dependent DNA helicase RecG compare
H281DRAFT_02097 -1.6 -5.3 biotin synthase compare
H281DRAFT_04419 -1.6 -5.4 Ppx/GppA phosphatase compare
H281DRAFT_02001 -1.6 -5.3 protein translocase subunit secB compare
H281DRAFT_05681 -1.6 -3.7 transcriptional regulator, TetR family compare
H281DRAFT_01382 -1.5 -1.3 Cellulose biosynthesis protein BcsR compare
H281DRAFT_00115 -1.5 -1.7 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_04552 -1.5 -1.5 acetolactate synthase, small subunit compare
H281DRAFT_03931 -1.5 -1.9 phosphoglycolate phosphatase compare
H281DRAFT_05643 -1.5 -5.8 phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein compare
H281DRAFT_02196 -1.5 -5.0 phytanoyl-CoA hydroxylase compare
H281DRAFT_06238 -1.5 -1.0 hypothetical protein compare
H281DRAFT_02670 -1.5 -1.4 transcriptional regulator, GntR family compare
H281DRAFT_02148 -1.5 -3.6 cytochrome c compare
H281DRAFT_04404 -1.5 -2.1 GreA/GreB family elongation factor compare
H281DRAFT_04415 -1.5 -1.0 phosphate uptake regulator, PhoU compare
H281DRAFT_01984 -1.5 -7.9 protein SCO1/2 compare
H281DRAFT_06031 -1.5 -3.3 transcriptional regulator, MarR family compare
H281DRAFT_01111 -1.5 -1.4 transcriptional regulator, DeoR family compare
H281DRAFT_01413 -1.5 -1.1 hypothetical protein compare
H281DRAFT_00074 -1.5 -2.2 UDP-galactose 4-epimerase compare
H281DRAFT_04826 -1.5 -1.4 rhamnosyltransferase compare
H281DRAFT_04172 -1.5 -2.0 transcriptional regulator, TetR family compare
H281DRAFT_02731 -1.5 -1.7 hypothetical protein compare
H281DRAFT_01512 -1.5 -2.3 transcriptional regulator, IclR family compare
H281DRAFT_05421 -1.4 -1.5 transcriptional regulator, TetR family compare
H281DRAFT_05298 -1.4 -0.9 amino acid ABC transporter membrane protein 2, PAAT family compare
H281DRAFT_02094 -1.4 -6.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
H281DRAFT_04679 -1.4 -2.9 pyrroline-5-carboxylate reductase compare
H281DRAFT_02065 -1.4 -1.0 rfaE bifunctional protein, domain II compare
H281DRAFT_01987 -1.4 -6.8 Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family compare
H281DRAFT_04278 -1.4 -4.3 6-phosphogluconate dehydratase compare
H281DRAFT_04004 -1.4 -2.3 (p)ppGpp synthetase I, SpoT/RelA compare
H281DRAFT_04064 -1.4 -2.7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
H281DRAFT_00471 -1.4 -3.9 transcriptional regulator, IclR family compare
H281DRAFT_05315 -1.4 -1.2 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_01894 -1.4 -1.3 transcriptional regulator, MarR family compare
H281DRAFT_04639 -1.4 -2.0 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
H281DRAFT_04713 -1.4 -3.9 membrane-associated protein compare
H281DRAFT_05279 -1.4 -1.0 malonate decarboxylase beta subunit compare
H281DRAFT_04356 -1.4 -2.3 anti sigma-E protein, RseA compare
H281DRAFT_01102 -1.4 -2.6 hypothetical protein compare
H281DRAFT_06249 -1.4 -4.5 glutamate N-acetyltransferase compare
H281DRAFT_01298 -1.4 -1.5 beta-RFAP synthase compare
H281DRAFT_00359 -1.4 -1.5 Acyl-CoA dehydrogenase compare
H281DRAFT_03902 -1.4 -3.3 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_02372 -1.4 -2.4 transcriptional regulator, LysR family compare
H281DRAFT_05745 -1.4 -5.2 MCP methyltransferase, CheR-type compare
H281DRAFT_03764 -1.4 -1.4 ribulose-bisphosphate carboxylase large chain compare
H281DRAFT_05854 -1.4 -4.0 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE compare
H281DRAFT_01726 -1.4 -1.8 transcriptional regulator, TetR family compare
H281DRAFT_03346 -1.4 -1.1 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_04000 -1.3 -5.8 transcription elongation factor GreB compare
H281DRAFT_00168 -1.3 -3.0 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_02096 -1.3 -2.6 dethiobiotin synthetase compare
H281DRAFT_06114 -1.3 -1.8 Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family compare
H281DRAFT_00777 -1.3 -1.4 SOS-response transcriptional repressor, LexA compare
H281DRAFT_03099 -1.3 -1.6 H+/Cl- antiporter ClcA compare
H281DRAFT_05092 -1.3 -1.8 hypothetical protein compare
H281DRAFT_03610 -1.3 -2.5 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
H281DRAFT_01276 -1.3 -2.0 vanillin synthase /trans-feruloyl-CoA hydratase compare
H281DRAFT_03226 -1.3 -0.9 mannose-binding protein /fructose-binding protein /ribose-binding protein compare
H281DRAFT_04727 -1.3 -3.1 transcriptional repressor NrdR compare
H281DRAFT_05852 -1.3 -5.7 transcriptional regulator, TetR family compare
H281DRAFT_01289 -1.3 -0.9 mxaA protein compare
H281DRAFT_05021 -1.3 -0.7 Response regulator compare
H281DRAFT_02118 -1.3 -2.1 fructokinase compare
H281DRAFT_04083 -1.3 -5.1 ATP-dependent Clp protease adaptor protein ClpS compare
H281DRAFT_03542 -1.3 -2.1 5,6,7,8-tetrahydromethanopterin hydro-lyase compare
H281DRAFT_01684 -1.3 -3.0 transcriptional regulator, TetR family compare
H281DRAFT_06288 -1.2 -3.5 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
H281DRAFT_04287 -1.2 -3.9 D-amino-acid dehydrogenase compare
H281DRAFT_03798 -1.2 -1.2 NitT/TauT family transport system permease protein compare
H281DRAFT_03429 -1.2 -0.9 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
H281DRAFT_06286 -1.2 -1.4 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_00120 -1.2 -2.8 sirohydrochlorin cobaltochelatase compare
H281DRAFT_04623 -1.2 -3.7 transcriptional regulator, TetR family compare
H281DRAFT_02602 -1.2 -1.2 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_03277 -1.2 -1.4 hypothetical protein compare
H281DRAFT_06315 -1.2 -0.8 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_00530 -1.2 -2.4 uncharacterized protein compare
H281DRAFT_02161 -1.2 -7.5 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare


Specific Phenotypes

For 5 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Paraburkholderia bryophila 376MFSha3.1

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms