Experiment set12S540 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
H281DRAFT_06068 -6.2 -7.4 phosphoribosylanthranilate isomerase compare
H281DRAFT_06067 -5.8 -12.3 tryptophan synthase, beta chain compare
H281DRAFT_05713 -5.7 -7.7 anthranilate phosphoribosyltransferase compare
H281DRAFT_05801 -5.2 -6.2 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_02214 -5.2 -20.1 homoserine O-acetyltransferase compare
H281DRAFT_06065 -5.2 -9.9 tryptophan synthase, alpha chain compare
H281DRAFT_00116 -5.0 -2.6 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_04974 -4.9 -6.7 aromatic-amino-acid transaminase compare
H281DRAFT_06059 -4.7 -10.0 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_06072 -4.7 -10.8 3-isopropylmalate dehydrogenase compare
H281DRAFT_00197 -4.6 -14.8 Phosphoenolpyruvate carboxylase, type 1 compare
H281DRAFT_06073 -4.6 -5.8 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_05620 -4.6 -21.8 glutamate synthase (NADH) large subunit compare
H281DRAFT_04610 -4.5 -20.1 Fe-S oxidoreductase compare
H281DRAFT_05712 -4.5 -6.5 indole-3-glycerol phosphate synthase compare
H281DRAFT_06075 -4.5 -8.7 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_03926 -4.4 -12.9 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_04553 -4.4 -6.2 ketol-acid reductoisomerase compare
H281DRAFT_00117 -4.2 -8.5 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_00286 -4.2 -2.8 transaldolase compare
H281DRAFT_06264 -4.0 -4.9 glutamate 5-kinase compare
H281DRAFT_04278 -3.8 -7.9 6-phosphogluconate dehydratase compare
H281DRAFT_02004 -3.7 -4.4 phosphoglycerate mutase compare
H281DRAFT_02926 -3.7 -13.6 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_04120 -3.5 -7.5 argininosuccinate synthase compare
H281DRAFT_05715 -3.5 -20.2 anthranilate synthase, component I compare
H281DRAFT_00860 -3.5 -1.7 phosphoserine phosphatase compare
H281DRAFT_03925 -3.4 -8.5 chorismate mutase compare
H281DRAFT_05621 -3.4 -3.2 glutamate synthase (NADH) small subunit compare
H281DRAFT_02215 -3.4 -5.1 methionine biosynthesis protein MetW compare
H281DRAFT_05714 -3.2 -4.3 anthranilate synthase, component II compare
H281DRAFT_04831 -3.2 -3.1 hypothetical protein compare
H281DRAFT_02000 -3.1 -6.9 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
H281DRAFT_04922 -3.0 -3.5 iron complex transport system permease protein compare
H281DRAFT_00114 -3.0 -6.1 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_00120 -2.9 -5.2 sirohydrochlorin cobaltochelatase compare
H281DRAFT_06060 -2.9 -3.9 amidophosphoribosyltransferase compare
H281DRAFT_04119 -2.6 -4.2 ornithine carbamoyltransferase compare
H281DRAFT_04835 -2.4 -2.7 hypothetical protein compare
H281DRAFT_00118 -2.3 -6.8 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_04679 -2.3 -3.8 pyrroline-5-carboxylate reductase compare
H281DRAFT_04680 -2.3 -3.9 hypothetical protein compare
H281DRAFT_01111 -2.2 -2.9 transcriptional regulator, DeoR family compare
H281DRAFT_00115 -2.2 -4.4 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_04710 -1.9 -1.8 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_00194 -1.9 -2.4 argininosuccinate lyase compare
H281DRAFT_02205 -1.8 -2.4 transcriptional regulator, TraR/DksA family compare
H281DRAFT_04087 -1.8 -2.5 hypothetical protein compare
H281DRAFT_00909 -1.7 -1.2 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_04388 -1.7 -1.1 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_04924 -1.7 -3.6 iron complex outermembrane recepter protein compare
H281DRAFT_00169 -1.7 -3.1 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_04082 -1.6 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_06315 -1.6 -0.9 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_04635 -1.6 -2.4 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) compare
H281DRAFT_04275 -1.5 -4.0 gluconate kinase, SKI family compare
H281DRAFT_01798 -1.5 -1.4 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_02065 -1.5 -1.4 rfaE bifunctional protein, domain II compare
H281DRAFT_05717 -1.5 -8.0 ribulose-5-phosphate 3-epimerase compare
H281DRAFT_04276 -1.4 -5.0 gluconate permease GntT compare
H281DRAFT_04850 -1.4 -1.9 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
H281DRAFT_00113 -1.4 -3.7 transcriptional regulator, LysR family compare
H281DRAFT_03610 -1.3 -2.9 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
H281DRAFT_06190 -1.3 -1.7 DNA-binding protein H-NS compare
H281DRAFT_06008 -1.3 -6.8 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_00168 -1.3 -4.3 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_04707 -1.3 -6.0 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_02939 -1.2 -2.7 hypothetical protein compare
H281DRAFT_00163 -1.2 -6.4 glucokinase /transcriptional regulator, RpiR family compare
H281DRAFT_00896 -1.2 -2.1 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_04937 -1.2 -2.6 MFS transporter, DHA2 family, multidrug resistance protein compare
H281DRAFT_06310 -1.2 -3.4 Barstar (barnase inhibitor) compare
H281DRAFT_00886 -1.2 -4.3 two component transcriptional regulator, winged helix family compare
H281DRAFT_02201 -1.2 -2.7 hypothetical protein compare
H281DRAFT_05563 -1.2 -1.8 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_05086 -1.1 -2.1 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_00235 -1.1 -2.0 hypothetical protein compare
H281DRAFT_06297 -1.1 -1.9 L-arabinose-binding protein compare
H281DRAFT_06081 -1.1 -2.5 ubiquitin-hydrolase Zn-finger-containing protein compare
H281DRAFT_00165 -1.1 -6.1 glucose-6-phosphate 1-dehydrogenase compare
H281DRAFT_05815 -1.1 -4.2 5,10-methenyltetrahydrofolate synthetase compare
H281DRAFT_04851 -1.0 -2.9 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC compare
H281DRAFT_05743 -1.0 -3.1 CheW protein compare
H281DRAFT_04357 -1.0 -4.0 sigma E regulatory protein, MucB/RseB compare
H281DRAFT_02670 -1.0 -1.5 transcriptional regulator, GntR family compare
H281DRAFT_04171 -1.0 -4.8 membrane fusion protein, multidrug efflux system compare
H281DRAFT_04075 -1.0 -5.7 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
H281DRAFT_02837 -1.0 -3.7 multiple antibiotic resistance protein compare
H281DRAFT_04064 -1.0 -2.3 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
H281DRAFT_04848 -1.0 -1.6 hypothetical protein compare
H281DRAFT_04672 -1.0 -2.8 ATP-dependent DNA helicase RecG compare
H281DRAFT_03931 -0.9 -2.9 phosphoglycolate phosphatase compare
H281DRAFT_00195 -0.9 -6.3 transcriptional regulator, XRE family compare
H281DRAFT_05494 -0.9 -1.2 DNA-binding transcriptional regulator, GntR family compare
H281DRAFT_01889 -0.9 -3.0 7-cyano-7-deazaguanine reductase compare
H281DRAFT_06277 -0.9 -3.5 hypothetical protein compare
H281DRAFT_00317 -0.9 -2.8 O-antigen ligase compare
H281DRAFT_00468 -0.9 -3.8 dihydrolipoamide dehydrogenase compare
H281DRAFT_02731 -0.9 -2.2 hypothetical protein compare
H281DRAFT_00717 -0.9 -1.8 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_00563 -0.8 -2.0 microcin C transport system ATP-binding protein compare
H281DRAFT_04970 -0.8 -1.7 high-affinity iron transporter compare
H281DRAFT_06480 -0.8 -1.3 arginine succinyltransferase compare
H281DRAFT_06017 -0.8 -1.4 Exodeoxyribonuclease VII small subunit compare
H281DRAFT_00908 -0.8 -2.4 D-amino-acid dehydrogenase compare
H281DRAFT_05854 -0.8 -2.7 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE compare
H281DRAFT_04844 -0.8 -3.6 Glycosyltransferase, GT2 family compare
H281DRAFT_04971 -0.8 -3.4 Predicted periplasmic lipoprotein involved in iron transport compare
H281DRAFT_04008 -0.8 -2.1 RNAse PH compare
H281DRAFT_03069 -0.8 -1.3 Uncharacterized conserved protein compare
H281DRAFT_00167 -0.8 -2.3 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_02372 -0.8 -2.3 transcriptional regulator, LysR family compare
H281DRAFT_00471 -0.8 -4.0 transcriptional regulator, IclR family compare
H281DRAFT_04687 -0.8 -5.7 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
H281DRAFT_00166 -0.8 -3.9 carbohydrate ABC transporter substrate-binding protein, CUT1 family compare
H281DRAFT_00658 -0.8 -1.8 transcriptional regulator, IclR family compare
H281DRAFT_06462 -0.8 -0.9 hypothetical protein compare
H281DRAFT_04070 -0.8 -4.0 nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
H281DRAFT_00074 -0.8 -1.7 UDP-galactose 4-epimerase compare
H281DRAFT_00851 -0.8 -5.0 polyhydroxyalkanoate synthase compare
H281DRAFT_00291 -0.8 -1.8 Cytochrome c553 compare
H281DRAFT_02532 -0.8 -1.7 Sugar phosphate isomerase/epimerase compare
H281DRAFT_05192 -0.8 -1.5 phage shock protein A (PspA) family protein compare
H281DRAFT_05087 -0.8 -1.3 exodeoxyribonuclease V alpha subunit compare
H281DRAFT_04071 -0.7 -4.8 quinolinate synthetase compare
H281DRAFT_05800 -0.7 -1.8 putative membrane protein compare
H281DRAFT_00842 -0.7 -2.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_04195 -0.7 -1.4 heptosyltransferase-2 compare
H281DRAFT_01749 -0.7 -1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_04170 -0.7 -3.8 multidrug efflux pump compare
H281DRAFT_06127 -0.7 -2.7 hypothetical protein compare
H281DRAFT_05864 -0.7 -2.9 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_00395 -0.7 -4.2 hydroxymethylpyrimidine synthase compare
H281DRAFT_06276 -0.7 -2.0 hypothetical protein compare
H281DRAFT_02732 -0.7 -1.1 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_04694 -0.7 -3.2 heat-inducible transcription repressor HrcA compare
H281DRAFT_00529 -0.7 -1.8 KUP system potassium uptake protein compare
H281DRAFT_06356 -0.7 -2.6 RraA famliy compare
H281DRAFT_02696 -0.7 -1.4 glutathione S-transferase compare
H281DRAFT_00779 -0.7 -1.7 sulfate transport system permease protein compare
H281DRAFT_04515 -0.7 -1.1 RNAse G compare
H281DRAFT_02584 -0.7 -1.5 hypothetical protein compare
H281DRAFT_05469 -0.7 -2.5 transcriptional regulator, IclR family compare
H281DRAFT_02784 -0.7 -1.7 Uncharacterized conserved protein YecE, DUF72 family compare
H281DRAFT_01986 -0.7 -3.2 cytochrome c oxidase assembly protein subunit 15 compare
H281DRAFT_04362 -0.7 -1.9 RNAse III (EC 3.1.26.3) compare
H281DRAFT_01519 -0.7 -2.0 fructuronate reductase compare
H281DRAFT_00600 -0.7 -4.7 succinyldiaminopimelate aminotransferase apoenzyme compare
H281DRAFT_01178 -0.7 -2.2 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_04858 -0.7 -1.2 hypothetical protein compare
H281DRAFT_04356 -0.7 -2.0 anti sigma-E protein, RseA compare
H281DRAFT_05912 -0.7 -1.8 transcriptional regulator, TetR family compare
H281DRAFT_00518 -0.7 -1.6 Putative negative regulator of RcsB-dependent stress response compare
H281DRAFT_00859 -0.7 -3.1 cystathionine beta-lyase compare
H281DRAFT_04419 -0.7 -3.5 Ppx/GppA phosphatase compare
H281DRAFT_04153 -0.7 -1.3 xylulokinase compare
H281DRAFT_01414 -0.7 -1.5 hypothetical protein compare
H281DRAFT_00677 -0.7 -1.5 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_00261 -0.7 -1.8 Rubredoxin compare
H281DRAFT_00073 -0.7 -1.4 hypothetical protein compare
H281DRAFT_05908 -0.6 -1.0 hypothetical protein compare
H281DRAFT_01042 -0.6 -1.1 glycosyltransferase, MSMEG_0565 family compare
H281DRAFT_05892 -0.6 -1.0 carbohydrate ABC transporter substrate-binding protein, CUT1 family compare
H281DRAFT_02702 -0.6 -1.9 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_04607 -0.6 -1.8 hypothetical protein compare
H281DRAFT_02651 -0.6 -0.9 transcriptional regulator, MerR family compare
H281DRAFT_04639 -0.6 -2.5 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
H281DRAFT_01388 -0.6 -2.3 Uncharacterized conserved protein, DUF2252 family compare
H281DRAFT_01927 -0.6 -5.4 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_03542 -0.6 -1.5 5,6,7,8-tetrahydromethanopterin hydro-lyase compare
H281DRAFT_05618 -0.6 -4.5 outer membrane protein compare
H281DRAFT_02832 -0.6 -1.3 hypothetical protein compare
H281DRAFT_04539 -0.6 -2.0 Uncharacterized conserved protein, DUF924 family compare
H281DRAFT_00653 -0.6 -1.8 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_01799 -0.6 -1.1 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_01825 -0.6 -1.9 Outer membrane protein (porin) compare
H281DRAFT_04069 -0.6 -5.3 L-aspartate oxidase compare
H281DRAFT_00852 -0.6 -3.9 acetyl-CoA acetyltransferase compare
H281DRAFT_00966 -0.6 -2.2 uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107) compare
H281DRAFT_00841 -0.6 -1.2 hypothetical protein compare
H281DRAFT_01533 -0.6 -1.5 transcriptional regulator, LysR family compare
H281DRAFT_06032 -0.6 -2.1 peroxiredoxin, Ohr subfamily compare
H281DRAFT_05342 -0.6 -2.1 drug resistance transporter, EmrB/QacA subfamily compare
H281DRAFT_04552 -0.6 -1.7 acetolactate synthase, small subunit compare
H281DRAFT_05609 -0.6 -0.8 penicillin-binding protein 1A compare
H281DRAFT_00465 -0.6 -2.1 PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase compare
H281DRAFT_05540 -0.6 -1.7 transcriptional regulator, LacI family compare
H281DRAFT_04788 -0.6 -1.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03245 -0.6 -2.7 Uncharacterized iron-regulated membrane protein compare
H281DRAFT_01968 -0.6 -2.8 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
H281DRAFT_03045 -0.6 -2.9 Protein of unknown function (DUF938) compare
H281DRAFT_00385 -0.6 -3.4 2-isopropylmalate synthase compare
H281DRAFT_04346 -0.6 -1.5 uncharacterized protein compare
H281DRAFT_01993 -0.6 -3.9 cytochrome c oxidase subunit 1 compare
H281DRAFT_04849 -0.6 -0.8 UDP-glucose 4-epimerase compare
H281DRAFT_05214 -0.6 -1.0 transcriptional regulator, LacI family compare
H281DRAFT_04972 -0.6 -2.6 hypothetical protein compare
H281DRAFT_04826 -0.6 -1.0 rhamnosyltransferase compare
H281DRAFT_06102 -0.6 -1.7 peptide/nickel transport system permease protein compare
H281DRAFT_01050 -0.6 -1.8 maleylacetate reductase compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source D-Glucose across organisms