Experiment set12S539 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Sodium D,L-Lactate carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_03502 +1.0 2.8 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_06462 +0.9 1.8 hypothetical protein compare
H281DRAFT_02958 +0.9 2.7 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_01322 +0.9 1.6 Predicted ATP-dependent carboligase, ATP-grasp superfamily compare
H281DRAFT_02580 +0.9 1.4 SnoaL-like domain-containing protein compare
H281DRAFT_00969 +0.8 2.6 Type IV pili methyl-accepting chemotaxis transducer N-term compare
H281DRAFT_02058 +0.8 1.0 cholesterol transport system auxiliary component compare
H281DRAFT_06120 +0.8 1.3 hypothetical protein compare
H281DRAFT_05764 +0.8 1.6 flagellar basal-body rod modification protein FlgD compare
H281DRAFT_06197 +0.7 1.8 hypothetical protein compare
H281DRAFT_06070 +0.7 2.4 FimV C-terminal domain-containing protein compare
H281DRAFT_00469 +0.7 2.0 phasin family protein compare
H281DRAFT_05775 +0.7 4.7 flagellar biosynthetic protein FliQ compare
H281DRAFT_06347 +0.7 2.2 hypothetical protein compare
H281DRAFT_03810 +0.7 1.7 citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family compare
H281DRAFT_02441 +0.7 1.1 putative ABC transport system ATP-binding protein compare
H281DRAFT_05974 +0.7 1.4 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_03475 +0.7 2.9 hypothetical protein compare
H281DRAFT_00603 +0.7 2.8 ZipA, C-terminal FtsZ-binding domain compare
H281DRAFT_05157 +0.7 1.7 allantoin racemase compare
H281DRAFT_01002 +0.7 1.3 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_02624 +0.7 3.0 4-carboxymuconolactone decarboxylase compare
H281DRAFT_05545 +0.7 1.4 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_05910 +0.7 1.2 hypothetical protein compare
H281DRAFT_03266 +0.7 1.3 Nicotinamidase-related amidase compare
H281DRAFT_06531 +0.7 2.0 cob(II)yrinic acid a,c-diamide reductase /5,6-dimethylbenzimidazole synthase compare
H281DRAFT_00102 +0.7 1.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_02856 +0.7 1.6 Protein of unknown function (DUF1488) compare
H281DRAFT_00893 +0.7 1.9 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_00405 +0.6 1.4 Predicted small secreted protein compare
H281DRAFT_02584 +0.6 1.8 hypothetical protein compare
H281DRAFT_05774 +0.6 1.6 flagellar biosynthetic protein FliR compare
H281DRAFT_00731 +0.6 2.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01227 +0.6 1.8 L-rhamnose 1-dehydrogenase compare
H281DRAFT_03499 +0.6 2.9 2-aminoethylphosphonate transport system substrate-binding protein compare
H281DRAFT_01965 +0.6 1.6 hypothetical protein compare
H281DRAFT_01827 +0.6 1.5 hypothetical protein compare
H281DRAFT_04896 +0.6 1.2 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_03448 +0.6 1.3 Predicted ester cyclase compare
H281DRAFT_06285 +0.6 1.5 3-dehydroquinate dehydratase compare
H281DRAFT_03023 +0.6 1.0 Protein of unknown function (DUF2866) compare
H281DRAFT_06165 +0.6 2.5 hypothetical protein compare
H281DRAFT_06170 +0.6 1.9 hypothetical protein compare
H281DRAFT_04531 +0.6 1.6 K+-transporting ATPase ATPase C chain compare
H281DRAFT_01200 +0.6 1.9 short chain enoyl-CoA hydratase (EC 4.2.1.17) compare
H281DRAFT_01314 +0.6 2.0 D-fructose 1,6-bisphosphatase (EC 3.1.3.11) compare
H281DRAFT_01183 +0.6 1.0 Sugar lactone lactonase YvrE compare
H281DRAFT_02985 +0.6 1.5 copper chaperone compare
H281DRAFT_03184 +0.6 1.0 cation diffusion facilitator family transporter compare
H281DRAFT_00843 +0.6 1.1 lipoprotein NlpD compare
H281DRAFT_01269 +0.6 2.3 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_01024 +0.6 1.4 hypothetical protein compare
H281DRAFT_00072 +0.6 2.5 hypothetical protein compare
H281DRAFT_00248 +0.6 1.8 hypothetical protein compare
H281DRAFT_04440 +0.6 2.4 Predicted NTP pyrophosphohydrolase, NUDIX family compare
H281DRAFT_01231 +0.6 2.3 hypothetical protein compare
H281DRAFT_00326 +0.6 1.3 pyrroloquinoline quinone biosynthesis protein D compare
H281DRAFT_04889 +0.6 1.0 hypothetical protein compare
H281DRAFT_05756 +0.6 2.1 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_05216 +0.6 1.7 Protein of unknown function (DUF3022) compare
H281DRAFT_03432 +0.5 1.7 TupA-like ATPgrasp compare
H281DRAFT_02007 +0.5 4.9 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_01149 +0.5 0.7 two-component system, OmpR family, sensor histidine kinase QseC compare
H281DRAFT_04800 +0.5 1.7 protein SCO1/2 compare
H281DRAFT_04781 +0.5 1.1 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_01067 +0.5 1.1 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_01767 +0.5 1.1 hypothetical protein compare
H281DRAFT_02682 +0.5 1.3 MFS transporter, AAHS family, 4-hydroxybenzoate transporter compare
H281DRAFT_04899 +0.5 2.4 microcin C transport system ATP-binding protein compare
H281DRAFT_05962 +0.5 0.9 RraA famliy compare
H281DRAFT_05967 +0.5 1.2 Cupredoxin-like domain-containing protein compare
H281DRAFT_04427 +0.5 1.7 hypothetical protein compare
H281DRAFT_01462 +0.5 1.3 cyclopropane-fatty-acyl-phospholipid synthase compare
H281DRAFT_01554 +0.5 1.4 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_00378 +0.5 1.6 glutamate synthase (NADPH/NADH) small chain compare
H281DRAFT_02116 +0.5 2.0 transcriptional regulator, LacI family compare
H281DRAFT_00146 +0.5 2.3 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
H281DRAFT_01584 +0.5 1.1 enamidase compare
H281DRAFT_03130 +0.5 0.8 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_01235 +0.5 1.6 DNA-binding protein H-NS compare
H281DRAFT_00010 +0.5 2.3 nitrile hydratase compare
H281DRAFT_01814 +0.5 1.6 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_05323 +0.5 0.9 hypothetical protein compare
H281DRAFT_01831 +0.5 2.0 DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain compare
H281DRAFT_01010 +0.5 1.7 Protein of unknown function (DUF3788) compare
H281DRAFT_04250 +0.5 2.4 DNA-binding protein Fis compare
H281DRAFT_02136 +0.5 1.0 hypothetical protein compare
H281DRAFT_01011 +0.5 1.2 Uncharacterized membrane protein YkgB compare
H281DRAFT_01190 +0.5 1.6 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_04685 +0.5 2.7 cob(I)alamin adenosyltransferase compare
H281DRAFT_01890 +0.5 2.7 reactive intermediate/imine deaminase compare
H281DRAFT_05430 +0.5 2.8 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
H281DRAFT_04676 +0.5 1.4 hypothetical protein compare
H281DRAFT_05544 +0.5 1.5 NitT/TauT family transport system permease protein compare
H281DRAFT_05243 +0.5 1.2 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_03299 +0.5 1.4 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein compare
H281DRAFT_01441 +0.5 0.9 two component heavy metal response transcriptional regulator, winged helix family compare
H281DRAFT_01632 +0.5 4.4 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_04050 +0.5 1.7 beta-aspartyl-peptidase (threonine type) compare
H281DRAFT_00713 +0.5 1.1 23S rRNA Gm-2251 2'-O-methyltransferase compare
H281DRAFT_05610 +0.5 1.4 hypothetical protein compare
H281DRAFT_04904 +0.5 1.1 outer membrane transport energization protein ExbD compare
H281DRAFT_01050 +0.5 1.5 maleylacetate reductase compare
H281DRAFT_03199 +0.5 2.6 flagellar transcriptional activator FlhD compare
H281DRAFT_04153 +0.5 1.1 xylulokinase compare
H281DRAFT_06058 +0.5 2.4 transcriptional regulator, AraC family compare
H281DRAFT_01274 +0.5 2.5 Outer membrane protein (porin) compare
H281DRAFT_01335 +0.5 1.6 Signal transduction histidine kinase compare
H281DRAFT_03837 +0.5 1.7 hypothetical protein compare
H281DRAFT_03233 +0.5 2.2 cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases compare
H281DRAFT_01229 +0.5 1.1 Sugar phosphate permease compare
H281DRAFT_01580 +0.5 1.6 hypothetical protein compare
H281DRAFT_05122 +0.5 2.1 host factor-I protein compare
H281DRAFT_01108 +0.5 1.0 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05879 +0.5 1.5 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_00229 +0.5 2.3 hypothetical protein compare
H281DRAFT_01675 +0.5 2.1 PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3) compare
H281DRAFT_00167 +0.5 1.8 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_04776 +0.5 1.2 GDPmannose 4,6-dehydratase compare
H281DRAFT_00797 +0.5 2.4 D-alpha,beta-D-heptose 7-phosphate 1-kinase (EC 2.7.1.167) compare
H281DRAFT_00052 +0.5 1.7 protein of unknown function (DUF3331) compare
H281DRAFT_05315 +0.5 1.1 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_01534 +0.4 2.1 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase compare
H281DRAFT_04654 +0.4 0.9 NAD(P) transhydrogenase subunit alpha compare
H281DRAFT_02170 +0.4 1.3 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_01262 +0.4 1.0 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_04391 +0.4 3.1 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_06003 +0.4 1.8 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_00348 +0.4 1.7 membrane fusion protein, multidrug efflux system compare
H281DRAFT_05755 +0.4 1.2 flagellar biosynthesis protein FlhG compare
H281DRAFT_00726 +0.4 1.4 acyl-CoA dehydrogenase compare
H281DRAFT_05770 +0.4 2.7 flagellar protein FlgJ compare
H281DRAFT_02185 +0.4 2.5 hypothetical protein compare
H281DRAFT_02292 +0.4 1.6 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_00798 +0.4 2.3 Cell wall-associated hydrolase, NlpC family compare
H281DRAFT_02942 +0.4 1.2 glycerate dehydrogenase compare
H281DRAFT_03644 +0.4 1.1 betaine-aldehyde dehydrogenase compare
H281DRAFT_05783 +0.4 2.7 flagellum-specific ATP synthase compare
H281DRAFT_01409 +0.4 1.9 acetate kinase compare
H281DRAFT_04998 +0.4 0.8 type III secretion protein T compare
H281DRAFT_00737 +0.4 1.1 Methylase involved in ubiquinone/menaquinone biosynthesis compare
H281DRAFT_01141 +0.4 2.1 xanthine dehydrogenase, molybdenum binding subunit apoprotein compare
H281DRAFT_05781 +0.4 1.5 flagellar hook-length control protein FliK compare
H281DRAFT_02758 +0.4 2.4 putative membrane protein compare
H281DRAFT_04406 +0.4 1.3 putative RNA-binding protein, YhbY family compare
H281DRAFT_00240 +0.4 3.5 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_04618 +0.4 1.0 putative regulatory protein, FmdB family compare
H281DRAFT_03716 +0.4 1.8 AraC family transcriptional regulator, transcriptional activator FtrA compare
H281DRAFT_05322 +0.4 1.9 gluconolactonase (EC 3.1.1.17) compare
H281DRAFT_04792 +0.4 1.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00133 +0.4 2.5 cell division protein ZapA compare
H281DRAFT_06056 +0.4 3.2 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_03779 +0.4 2.3 Forkhead associated (FHA) domain, binds pSer, pThr, pTyr compare
H281DRAFT_00763 +0.4 1.6 hypothetical protein compare
H281DRAFT_02436 +0.4 2.7 flagellar hook-associated protein 2 compare
H281DRAFT_01144 +0.4 1.1 transcriptional regulator, LysR family compare
H281DRAFT_03812 +0.4 2.1 hypothetical protein compare
H281DRAFT_05955 +0.4 1.6 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_04915 +0.4 1.6 asparaginase compare
H281DRAFT_02450 +0.4 1.3 glycine betaine/proline transport system ATP-binding protein compare
H281DRAFT_01187 +0.4 0.7 short chain enoyl-CoA hydratase (EC 4.2.1.17) compare
H281DRAFT_05041 +0.4 0.8 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_02579 +0.4 1.2 maleylacetate reductase compare
H281DRAFT_05183 +0.4 1.1 putrescine transport system permease protein compare
H281DRAFT_02626 +0.4 1.4 hypothetical protein compare
H281DRAFT_02691 +0.4 1.5 transcriptional regulator, ArsR family compare
H281DRAFT_01295 +0.4 1.0 Cytochrome C oxidase, cbb3-type, subunit III compare
H281DRAFT_06269 +0.4 1.2 hypoxanthine phosphoribosyltransferase compare
H281DRAFT_00067 +0.4 1.6 transposase, IS4 family compare
H281DRAFT_00231 +0.4 1.5 hypothetical protein compare
H281DRAFT_05868 +0.4 1.7 2-Methylisocitrate lyase, PEP mutase family compare
H281DRAFT_05382 +0.4 1.3 diguanylate cyclase (GGDEF) domain-containing protein compare
H281DRAFT_01457 +0.4 1.9 hypothetical protein compare
H281DRAFT_01062 +0.4 1.6 hypothetical protein compare
H281DRAFT_05766 +0.4 0.9 flagellar basal-body rod protein FlgF compare
H281DRAFT_03521 +0.4 1.1 hypothetical protein compare
H281DRAFT_06074 +0.4 1.5 entericidin A compare
H281DRAFT_00172 +0.4 1.0 DNA-nicking endonuclease, Smr domain compare
H281DRAFT_05768 +0.4 1.5 flagellar L-ring protein precursor FlgH compare
H281DRAFT_01297 +0.4 1.0 pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) compare
H281DRAFT_01688 +0.4 1.8 aliphatic nitrilase compare
H281DRAFT_00666 +0.4 2.0 altronate hydrolase compare
H281DRAFT_04997 +0.4 0.8 AraC-type DNA-binding protein compare
H281DRAFT_05225 +0.4 1.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_05761 +0.4 2.6 flagella basal body P-ring formation protein FlgA compare
H281DRAFT_06560 +0.4 1.4 hypothetical protein compare
H281DRAFT_00976 +0.4 1.0 LysR family transcriptional regulator, glycine cleavage system transcriptional activator compare
H281DRAFT_05765 +0.4 3.1 flagellar hook protein FlgE compare
H281DRAFT_04369 +0.4 1.4 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_00782 +0.4 1.5 transcriptional regulator, LysR family compare
H281DRAFT_01028 +0.4 0.7 peptide/nickel transport system permease protein compare
H281DRAFT_05075 +0.4 1.1 hypothetical protein compare
H281DRAFT_02488 +0.4 1.6 NitT/TauT family transport system permease protein compare
H281DRAFT_05376 +0.4 1.1 hypothetical protein compare
H281DRAFT_00920 +0.4 1.4 transcriptional regulator, GntR family compare
H281DRAFT_03995 +0.4 1.6 hypothetical protein compare
H281DRAFT_03326 +0.4 1.7 PAS domain S-box-containing protein compare
H281DRAFT_03143 +0.4 1.9 FAD/FMN-containing dehydrogenase compare
H281DRAFT_02386 +0.4 2.6 16S rRNA m(7)G-527 methyltransferase (EC 2.1.1.170) compare
H281DRAFT_05344 +0.4 1.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium D,L-Lactate in Paraburkholderia bryophila 376MFSha3.1

For carbon source Sodium D,L-Lactate across organisms