Experiment set12S505 for Paraburkholderia bryophila 376MFSha3.1

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Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Group: in planta
Media: + Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Culturing: Burk376_ML3a, pot, at 26 (C), (Solid)
By: Marta Torres on 4-Dec-22

Specific Phenotypes

For 11 genes in this experiment

For in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Paraburkholderia bryophila 376MFSha3.1

For in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms

SEED Subsystems

Subsystem #Specific
ABC transporter branched-chain amino acid (TC 3.A.1.4.1) 2
Acetyl-CoA fermentation to Butyrate 1
DNA repair, UvrABC system 1
Isobutyryl-CoA to Propionyl-CoA Module 1
Valine degradation 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
adenosylcobalamin salvage from cobalamin 5 5 4
adenosylcobinamide-GDP salvage from cobinamide I 5 5 3
adenosylcobinamide-GDP biosynthesis from cobyrinate a,c-diamide 6 6 3
β-alanine degradation II 2 2 1
adenosylcobinamide-GDP salvage from cobinamide II 6 5 3
cobalamin salvage (eukaryotic) 8 4 4
β-alanine degradation I 2 1 1
superpathway of adenosylcobalamin salvage from cobinamide I 8 8 3
superpathway of adenosylcobalamin salvage from cobinamide II 9 8 3
glycine betaine degradation III 7 6 2
propanoyl-CoA degradation II 5 2 1
acrylate degradation I 5 2 1
myo-inositol degradation I 7 6 1
2,4-dinitrotoluene degradation 7 1 1
L-valine degradation I 8 5 1
myo-, chiro- and scyllo-inositol degradation 10 6 1
adenosylcobalamin biosynthesis II (aerobic) 33 29 3
adenosylcobalamin biosynthesis I (anaerobic) 36 30 3