Experiment set12S494 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_03266 +4.5 10.4 Nicotinamidase-related amidase compare
H281DRAFT_05755 +4.0 4.0 flagellar biosynthesis protein FlhG compare
H281DRAFT_05210 +2.3 5.6 Sugar phosphate isomerase/epimerase compare
H281DRAFT_05618 +1.9 14.5 outer membrane protein compare
H281DRAFT_01149 +1.8 2.1 two-component system, OmpR family, sensor histidine kinase QseC compare
H281DRAFT_05199 +1.8 9.6 transcriptional regulator, TetR family compare
H281DRAFT_02441 +1.7 2.3 putative ABC transport system ATP-binding protein compare
H281DRAFT_06490 +1.6 2.6 hypothetical protein compare
H281DRAFT_05762 +1.4 4.4 flagellar basal-body rod protein FlgB compare
H281DRAFT_05761 +1.4 7.2 flagella basal body P-ring formation protein FlgA compare
H281DRAFT_01639 +1.4 8.1 methyl-accepting chemotaxis protein compare
H281DRAFT_05753 +1.4 9.3 flagellar biosynthesis protein FlhA compare
H281DRAFT_00885 +1.4 7.7 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_01632 +1.3 10.5 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_01295 +1.3 3.0 Cytochrome C oxidase, cbb3-type, subunit III compare
H281DRAFT_00848 +1.3 2.4 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) compare
H281DRAFT_05764 +1.3 2.7 flagellar basal-body rod modification protein FlgD compare
H281DRAFT_05883 +1.3 1.3 ornithine cyclodeaminase (EC 4.3.1.12) compare
H281DRAFT_02926 +1.3 10.0 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_05783 +1.3 8.9 flagellum-specific ATP synthase compare
H281DRAFT_01050 +1.3 2.4 maleylacetate reductase compare
H281DRAFT_02178 +1.3 6.8 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
H281DRAFT_05756 +1.3 2.7 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_05785 +1.2 7.2 flagellar motor switch protein FliG compare
H281DRAFT_05737 +1.2 4.5 flagellar transcriptional activator FlhD compare
H281DRAFT_05775 +1.2 8.2 flagellar biosynthetic protein FliQ compare
H281DRAFT_01494 +1.2 2.0 S-formylglutathione hydrolase FrmB compare
H281DRAFT_04764 +1.2 2.0 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_02179 +1.2 9.3 two component transcriptional regulator, LuxR family compare
H281DRAFT_05774 +1.2 3.6 flagellar biosynthetic protein FliR compare
H281DRAFT_05769 +1.2 8.8 flagellar P-ring protein precursor FlgI compare
H281DRAFT_03157 +1.2 1.9 transcriptional regulator, LysR family compare
H281DRAFT_05781 +1.2 3.7 flagellar hook-length control protein FliK compare
H281DRAFT_05752 +1.2 7.4 flagellar biosynthetic protein FlhB compare
H281DRAFT_03050 +1.1 1.1 Mannose-6-phosphate isomerase, cupin superfamily compare
H281DRAFT_04835 +1.1 3.4 hypothetical protein compare
H281DRAFT_06070 +1.1 4.1 FimV C-terminal domain-containing protein compare
H281DRAFT_01735 +1.1 1.3 two-component system, OmpR family, heavy metal sensor histidine kinase CusS compare
H281DRAFT_05763 +1.1 4.8 flagellar basal-body rod protein FlgC compare
H281DRAFT_01237 +1.1 2.5 DnaJ-class molecular chaperone with C-terminal Zn finger domain compare
H281DRAFT_01038 +1.1 1.6 methylmalonyl-CoA mutase compare
H281DRAFT_05754 +1.1 4.3 flagellar biosynthesis protein FlhF compare
H281DRAFT_00540 +1.1 2.7 tRNA/rRNA methyltransferase compare
H281DRAFT_05770 +1.0 6.6 flagellar protein FlgJ compare
H281DRAFT_02612 +1.0 2.1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase compare
H281DRAFT_05942 +1.0 1.5 transcriptional regulator, LysR family compare
H281DRAFT_02958 +1.0 2.2 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_05786 +1.0 7.5 flagellar M-ring protein FliF compare
H281DRAFT_04421 +1.0 1.1 phosphohistidine phosphatase, SixA compare
H281DRAFT_05765 +1.0 8.0 flagellar hook protein FlgE compare
H281DRAFT_06008 +1.0 5.9 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_02649 +1.0 3.1 haloacetate dehalogenase compare
H281DRAFT_01400 +1.0 1.7 cytochrome b561 compare
H281DRAFT_05779 +1.0 6.5 flagellar motor switch protein FliM compare
H281DRAFT_01416 +1.0 1.8 NADH dehydrogenase compare
H281DRAFT_05784 +1.0 3.1 flagellar assembly protein FliH compare
H281DRAFT_01224 +0.9 1.9 Predicted metal-dependent hydrolase, TIM-barrel fold compare
H281DRAFT_00366 +0.9 1.3 phospholipase C compare
H281DRAFT_00663 +0.9 1.4 assimilatory nitrite reductase (NAD(P)H) small subunit (EC 1.7.1.4) compare
H281DRAFT_02878 +0.9 1.4 response regulator receiver sensor signal transduction histidine kinase compare
H281DRAFT_01570 +0.9 1.1 luciferase-type oxidoreductase, BA3436 family compare
H281DRAFT_00057 +0.9 1.1 succinate semialdehyde dehydrogenase compare
H281DRAFT_04539 +0.9 1.7 Uncharacterized conserved protein, DUF924 family compare
H281DRAFT_00753 +0.9 2.0 Protein of unknown function (DUF1488) compare
H281DRAFT_03505 +0.9 2.4 putative phosphonoacetaldehyde dehydrogenase compare
H281DRAFT_04831 +0.9 2.7 hypothetical protein compare
H281DRAFT_05334 +0.9 1.8 Short-chain dehydrogenase compare
H281DRAFT_04448 +0.9 2.3 L-threonine aldolase compare
H281DRAFT_05222 +0.9 1.3 Dephospho-CoA kinase compare
H281DRAFT_00072 +0.9 4.0 hypothetical protein compare
H281DRAFT_05778 +0.9 2.1 flagellar motor switch protein FliN/FliY compare
H281DRAFT_05476 +0.9 2.5 Short-chain dehydrogenase compare
H281DRAFT_04585 +0.9 2.2 hypothetical protein compare
H281DRAFT_01204 +0.9 1.0 hypothetical protein compare
H281DRAFT_06347 +0.8 1.6 hypothetical protein compare
H281DRAFT_01483 +0.8 1.9 hypothetical protein compare
H281DRAFT_03620 +0.8 2.1 acylphosphatase compare
H281DRAFT_00528 +0.8 1.1 hypothetical protein compare
H281DRAFT_05776 +0.8 3.6 flagellar biosynthetic protein FliP compare
H281DRAFT_05766 +0.8 1.8 flagellar basal-body rod protein FlgF compare
H281DRAFT_06560 +0.8 2.9 hypothetical protein compare
H281DRAFT_01522 +0.8 1.9 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_04998 +0.8 1.3 type III secretion protein T compare
H281DRAFT_00389 +0.8 1.6 Protein of unknown function (DUF2844) compare
H281DRAFT_04756 +0.8 1.8 2-hydroxychromene-2-carboxylate isomerase compare
H281DRAFT_05767 +0.8 3.8 flagellar basal-body rod protein FlgG compare
H281DRAFT_02856 +0.8 1.5 Protein of unknown function (DUF1488) compare
H281DRAFT_02423 +0.8 6.0 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II compare
H281DRAFT_01633 +0.8 1.5 hypothetical protein compare
H281DRAFT_04885 +0.8 1.3 Uncharacterized membrane protein compare
H281DRAFT_02705 +0.7 2.0 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_00575 +0.7 2.0 Uncharacterized conserved protein YtfP, gamma-glutamylcyclotransferase (GGCT)/AIG2-like family compare
H281DRAFT_02732 +0.7 1.1 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_03775 +0.7 1.6 protein of unknown function (DUF4399) compare
H281DRAFT_00470 +0.7 4.7 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_05274 +0.7 2.3 Uncharacterized protein YcsI, UPF0317 family compare
H281DRAFT_00059 +0.7 1.7 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_00143 +0.7 2.4 L-threonine O-3-phosphate decarboxylase compare
H281DRAFT_00339 +0.7 2.6 Uncharacterized membrane protein compare
H281DRAFT_05537 +0.7 1.1 transcriptional regulator, IclR family compare
H281DRAFT_04690 +0.7 6.1 TIGR02099 family protein compare
H281DRAFT_02692 +0.7 1.1 nudix-type nucleoside diphosphatase, YffH/AdpP family compare
H281DRAFT_01584 +0.7 1.2 enamidase compare
H281DRAFT_01467 +0.7 1.7 hypothetical protein compare
H281DRAFT_02428 +0.7 2.6 hypothetical protein compare
H281DRAFT_02332 +0.7 2.0 L-arabinose-binding protein compare
H281DRAFT_00993 +0.7 2.7 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase compare
H281DRAFT_02772 +0.7 3.2 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_06502 +0.7 3.0 transcriptional regulator, LysR family compare
H281DRAFT_03220 +0.7 1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_03258 +0.7 2.1 5-carboxy-2-oxohept-3-enedioate decarboxylase HpaG1 subunit (EC 4.1.1.68) compare
H281DRAFT_02488 +0.7 2.6 NitT/TauT family transport system permease protein compare
H281DRAFT_02319 +0.7 1.4 hypothetical protein compare
H281DRAFT_00055 +0.7 3.4 amidase compare
H281DRAFT_02685 +0.7 1.2 Uncharacterized damage-inducible protein DinB (forms a four-helix bundle) compare
H281DRAFT_01210 +0.7 2.1 Protein of unknown function (DUF1488) compare
H281DRAFT_01835 +0.7 2.0 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_02616 +0.7 1.0 hypothetical protein compare
H281DRAFT_01451 +0.7 1.5 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_01880 +0.7 1.5 two component transcriptional regulator, LuxR family compare
H281DRAFT_00797 +0.7 1.3 D-alpha,beta-D-heptose 7-phosphate 1-kinase (EC 2.7.1.167) compare
H281DRAFT_05191 +0.7 1.5 Tetratricopeptide repeat-containing protein compare
H281DRAFT_05474 +0.7 1.5 Gluconate 2-dehydrogenase subunit 3 compare
H281DRAFT_05609 +0.7 1.2 penicillin-binding protein 1A compare
H281DRAFT_05768 +0.7 1.9 flagellar L-ring protein precursor FlgH compare
H281DRAFT_01002 +0.7 0.9 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_00920 +0.6 1.7 transcriptional regulator, GntR family compare
H281DRAFT_00361 +0.6 3.1 (3S)-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) / enoyl-CoA hydratase domain (from data) compare
H281DRAFT_00315 +0.6 2.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_06517 +0.6 1.2 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_00958 +0.6 2.0 Membrane protein involved in the export of O-antigen and teichoic acid compare
H281DRAFT_03341 +0.6 2.6 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_01148 +0.6 1.0 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_02498 +0.6 1.6 MFS transporter, putative metabolite:H+ symporter compare
H281DRAFT_00737 +0.6 1.2 Methylase involved in ubiquinone/menaquinone biosynthesis compare
H281DRAFT_05318 +0.6 2.4 MFS transporter, ACS family, glucarate transporter compare
H281DRAFT_02620 +0.6 2.4 Sugar phosphate permease compare
H281DRAFT_03963 +0.6 2.0 molybdenum cofactor sulfurylase compare
H281DRAFT_05890 +0.6 1.5 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_03500 +0.6 2.5 2-aminoethylphosphonate transport system ATP-binding protein compare
H281DRAFT_03140 +0.6 1.4 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_03979 +0.6 1.8 Predicted acyltransferase, LPLAT superfamily compare
H281DRAFT_00269 +0.6 1.0 phenazine biosynthesis protein PhzF family compare
H281DRAFT_04562 +0.6 1.4 polyribonucleotide nucleotidyltransferase compare
H281DRAFT_05041 +0.6 1.1 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_05356 +0.6 2.3 hypothetical protein compare
H281DRAFT_01244 +0.6 1.7 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_05937 +0.6 1.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
H281DRAFT_04058 +0.6 1.8 Acetyltransferase, GNAT family compare
H281DRAFT_01766 +0.6 2.1 cytochrome c oxidase subunit 2 compare
H281DRAFT_00786 +0.6 1.6 hydroxypyruvate isomerase compare
H281DRAFT_02513 +0.6 2.2 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_03986 +0.6 1.4 Putative Ca2+/H+ antiporter, TMEM165/GDT1 family compare
H281DRAFT_02971 +0.6 1.8 Protein of unknown function (DUF3225) compare
H281DRAFT_03368 +0.6 1.7 Uncharacterised protein family protein compare
H281DRAFT_01554 +0.6 1.0 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_04509 +0.6 1.2 transcriptional regulator, MerR family compare
H281DRAFT_02487 +0.6 1.4 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_01167 +0.6 1.9 threonine ammonia-lyase, biosynthetic, long form compare
H281DRAFT_06464 +0.6 2.8 hypothetical protein compare
H281DRAFT_02966 +0.6 1.5 nucleoside-binding protein compare
H281DRAFT_05054 +0.6 2.8 Predicted periplasmic or secreted lipoprotein compare
H281DRAFT_01262 +0.6 1.1 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_01620 +0.6 0.7 LexA-binding, inner membrane-associated putative hydrolase compare
H281DRAFT_03199 +0.6 3.0 flagellar transcriptional activator FlhD compare
H281DRAFT_01767 +0.6 1.0 hypothetical protein compare
H281DRAFT_01258 +0.6 2.2 transcriptional regulator, LysR family compare
H281DRAFT_03422 +0.6 1.8 dihydroxyacid dehydratase (EC 4.2.1.9) compare
H281DRAFT_02791 +0.6 1.2 apolipoprotein D and lipocalin family protein compare
H281DRAFT_01335 +0.6 1.8 Signal transduction histidine kinase compare
H281DRAFT_00718 +0.6 0.9 tyrosine-protein kinase Etk/Wzc compare
H281DRAFT_05473 +0.6 1.9 hypothetical protein compare
H281DRAFT_02349 +0.6 2.5 general secretion pathway protein J compare
H281DRAFT_00245 +0.6 1.6 MFS transporter, DHA2 family, multidrug resistance protein compare
H281DRAFT_06113 +0.6 2.4 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A compare
H281DRAFT_01227 +0.6 1.2 L-rhamnose 1-dehydrogenase compare
H281DRAFT_06170 +0.6 1.6 hypothetical protein compare
H281DRAFT_03340 +0.6 2.1 hypothetical protein compare
H281DRAFT_03047 +0.6 1.7 protein of unknown function (DUF4148) compare
H281DRAFT_02545 +0.6 1.5 tRNA A37 threonylcarbamoyladenosine synthetase subunit TsaC/SUA5/YrdC compare
H281DRAFT_00781 +0.6 1.8 sulfate transport system ATP-binding protein compare
H281DRAFT_01047 +0.6 1.1 GTP cyclohydrolase II compare
H281DRAFT_00643 +0.6 1.9 3-oxoacyl-[acyl-carrier-protein] reductase compare
H281DRAFT_00905 +0.6 1.4 putative ABC transport system ATP-binding protein compare
H281DRAFT_03322 +0.6 2.5 hypothetical protein compare
H281DRAFT_05419 +0.6 1.0 hypothetical protein compare
H281DRAFT_00770 +0.6 3.4 Predicted oxidoreductase compare
H281DRAFT_05122 +0.6 2.1 host factor-I protein compare
H281DRAFT_01456 +0.6 1.9 sulfonate transport system substrate-binding protein compare
H281DRAFT_04440 +0.6 1.9 Predicted NTP pyrophosphohydrolase, NUDIX family compare
H281DRAFT_00763 +0.6 1.6 hypothetical protein compare
H281DRAFT_06021 +0.6 1.9 NADH dehydrogenase compare
H281DRAFT_03426 +0.6 2.7 cytochrome bo3 quinol oxidase subunit 2 (EC 1.10.3.-) compare
H281DRAFT_00698 +0.6 1.4 transcriptional regulator, TetR family compare
H281DRAFT_01310 +0.6 0.8 ribulose-5-phosphate 3-epimerase (EC 5.1.3.1) compare
H281DRAFT_04133 +0.6 1.7 thioredoxin compare
H281DRAFT_01354 +0.6 1.1 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_01473 +0.6 1.7 transcriptional regulator, AraC family compare
H281DRAFT_02942 +0.6 1.3 glycerate dehydrogenase compare
H281DRAFT_00201 +0.6 1.5 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days in Paraburkholderia bryophila 376MFSha3.1

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days across organisms