Experiment set12S492 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

D-Glucose carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_02441 +1.9 3.1 putative ABC transport system ATP-binding protein compare
H281DRAFT_01149 +1.1 1.4 two-component system, OmpR family, sensor histidine kinase QseC compare
H281DRAFT_00603 +1.1 4.4 ZipA, C-terminal FtsZ-binding domain compare
H281DRAFT_05764 +1.1 3.3 flagellar basal-body rod modification protein FlgD compare
H281DRAFT_02940 +1.0 2.3 beta-methylmalyl-CoA/L-malyl-CoA lyase (EC 4.1.3.24) compare
H281DRAFT_04889 +0.9 1.2 hypothetical protein compare
H281DRAFT_01894 +0.9 1.6 transcriptional regulator, MarR family compare
H281DRAFT_01632 +0.9 7.7 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_05755 +0.9 2.8 flagellar biosynthesis protein FlhG compare
H281DRAFT_01462 +0.9 1.9 cyclopropane-fatty-acyl-phospholipid synthase compare
H281DRAFT_05756 +0.9 3.8 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_02488 +0.9 2.4 NitT/TauT family transport system permease protein compare
H281DRAFT_05962 +0.8 1.5 RraA famliy compare
H281DRAFT_05315 +0.8 2.1 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_06322 +0.8 1.3 LPS-assembly lipoprotein compare
H281DRAFT_06490 +0.8 1.6 hypothetical protein compare
H281DRAFT_05785 +0.8 2.8 flagellar motor switch protein FliG compare
H281DRAFT_05563 +0.8 2.0 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_06120 +0.8 1.4 hypothetical protein compare
H281DRAFT_04390 +0.8 5.9 ATP-binding cassette, subfamily B compare
H281DRAFT_05753 +0.8 5.2 flagellar biosynthesis protein FlhA compare
H281DRAFT_05071 +0.8 2.3 ammonium transporter compare
H281DRAFT_05752 +0.8 6.1 flagellar biosynthetic protein FlhB compare
H281DRAFT_05770 +0.8 4.6 flagellar protein FlgJ compare
H281DRAFT_05763 +0.8 4.7 flagellar basal-body rod protein FlgC compare
H281DRAFT_05044 +0.8 1.5 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_05381 +0.7 1.6 phosphonoacetate hydrolase compare
H281DRAFT_02436 +0.7 4.6 flagellar hook-associated protein 2 compare
H281DRAFT_05610 +0.7 2.7 hypothetical protein compare
H281DRAFT_04654 +0.7 1.6 NAD(P) transhydrogenase subunit alpha compare
H281DRAFT_05769 +0.7 5.2 flagellar P-ring protein precursor FlgI compare
H281DRAFT_05779 +0.7 5.2 flagellar motor switch protein FliM compare
H281DRAFT_05521 +0.7 3.1 3-hydroxyacyl-CoA dehydrogenase compare
H281DRAFT_05786 +0.7 5.9 flagellar M-ring protein FliF compare
H281DRAFT_03023 +0.7 1.2 Protein of unknown function (DUF2866) compare
H281DRAFT_05762 +0.7 3.4 flagellar basal-body rod protein FlgB compare
H281DRAFT_04406 +0.7 2.2 putative RNA-binding protein, YhbY family compare
H281DRAFT_01441 +0.7 1.3 two component heavy metal response transcriptional regulator, winged helix family compare
H281DRAFT_01633 +0.7 4.1 hypothetical protein compare
H281DRAFT_03645 +0.7 1.6 Predicted ring-cleavage extradiol dioxygenase compare
H281DRAFT_00843 +0.7 1.8 lipoprotein NlpD compare
H281DRAFT_03890 +0.7 1.7 Broad specificity phosphatase PhoE compare
H281DRAFT_05768 +0.7 2.9 flagellar L-ring protein precursor FlgH compare
H281DRAFT_01061 +0.7 2.0 hypothetical protein compare
H281DRAFT_01322 +0.7 1.2 Predicted ATP-dependent carboligase, ATP-grasp superfamily compare
H281DRAFT_05993 +0.7 1.4 Kynureninase compare
H281DRAFT_01242 +0.7 2.1 CDP-diacylglycerol pyrophosphatase compare
H281DRAFT_05765 +0.7 5.6 flagellar hook protein FlgE compare
H281DRAFT_04391 +0.7 4.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05767 +0.7 3.2 flagellar basal-body rod protein FlgG compare
H281DRAFT_01183 +0.7 1.0 Sugar lactone lactonase YvrE compare
H281DRAFT_00654 +0.6 1.1 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_05781 +0.6 3.3 flagellar hook-length control protein FliK compare
H281DRAFT_02691 +0.6 2.4 transcriptional regulator, ArsR family compare
H281DRAFT_05761 +0.6 5.1 flagella basal body P-ring formation protein FlgA compare
H281DRAFT_01883 +0.6 1.0 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_02459 +0.6 1.8 sarcosine oxidase subunit gamma compare
H281DRAFT_02349 +0.6 3.2 general secretion pathway protein J compare
H281DRAFT_05274 +0.6 2.1 Uncharacterized protein YcsI, UPF0317 family compare
H281DRAFT_05775 +0.6 2.9 flagellar biosynthetic protein FliQ compare
H281DRAFT_02136 +0.6 1.1 hypothetical protein compare
H281DRAFT_04880 +0.6 1.1 PRC-barrel domain-containing protein compare
H281DRAFT_06466 +0.6 1.3 luciferase family oxidoreductase, group 1 compare
H281DRAFT_05754 +0.6 3.7 flagellar biosynthesis protein FlhF compare
H281DRAFT_05078 +0.6 2.1 hypothetical protein compare
H281DRAFT_06285 +0.6 1.2 3-dehydroquinate dehydratase compare
H281DRAFT_06343 +0.6 2.3 transcriptional regulator, AsnC family compare
H281DRAFT_03906 +0.6 2.4 D-methionine transport system ATP-binding protein compare
H281DRAFT_02443 +0.6 1.1 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_04930 +0.6 2.3 Cupin domain compare
H281DRAFT_04721 +0.6 0.9 Cell division and transport-associated protein TolR compare
H281DRAFT_05784 +0.6 1.6 flagellar assembly protein FliH compare
H281DRAFT_01229 +0.6 1.4 Sugar phosphate permease compare
H281DRAFT_00726 +0.6 2.2 acyl-CoA dehydrogenase compare
H281DRAFT_03143 +0.6 3.2 FAD/FMN-containing dehydrogenase compare
H281DRAFT_02580 +0.6 1.4 SnoaL-like domain-containing protein compare
H281DRAFT_01679 +0.6 1.3 shikimate dehydrogenase (EC 1.1.1.25) compare
H281DRAFT_06502 +0.5 2.1 transcriptional regulator, LysR family compare
H281DRAFT_06356 +0.5 1.0 RraA famliy compare
H281DRAFT_03507 +0.5 3.0 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_06070 +0.5 1.6 FimV C-terminal domain-containing protein compare
H281DRAFT_03733 +0.5 1.1 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_05899 +0.5 1.7 hypothetical protein compare
H281DRAFT_03432 +0.5 1.9 TupA-like ATPgrasp compare
H281DRAFT_01584 +0.5 1.1 enamidase compare
H281DRAFT_06528 +0.5 1.3 cobalt-precorrin 5A hydrolase compare
H281DRAFT_05243 +0.5 1.1 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_01686 +0.5 3.1 Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains compare
H281DRAFT_02262 +0.5 2.3 hypothetical protein compare
H281DRAFT_05783 +0.5 3.4 flagellum-specific ATP synthase compare
H281DRAFT_02345 +0.5 2.4 type II secretion system protein N (GspN) compare
H281DRAFT_00660 +0.5 2.5 Glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase compare
H281DRAFT_02651 +0.5 0.9 transcriptional regulator, MerR family compare
H281DRAFT_04893 +0.5 1.1 transcriptional regulator, LysR family compare
H281DRAFT_03266 +0.5 0.9 Nicotinamidase-related amidase compare
H281DRAFT_02944 +0.5 1.6 aldehyde dehydrogenase (NAD+) compare
H281DRAFT_00540 +0.5 1.4 tRNA/rRNA methyltransferase compare
H281DRAFT_03199 +0.5 2.6 flagellar transcriptional activator FlhD compare
H281DRAFT_04934 +0.5 1.4 Sensors of blue-light using FAD compare
H281DRAFT_05296 +0.5 1.8 GntR family transcriptional regulator, histidine utilization repressor compare
H281DRAFT_03775 +0.5 1.0 protein of unknown function (DUF4399) compare
H281DRAFT_00716 +0.5 1.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02007 +0.5 4.3 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_01237 +0.5 0.8 DnaJ-class molecular chaperone with C-terminal Zn finger domain compare
H281DRAFT_01554 +0.5 1.2 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_01766 +0.5 1.9 cytochrome c oxidase subunit 2 compare
H281DRAFT_04875 +0.5 0.9 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_05356 +0.5 2.1 hypothetical protein compare
H281DRAFT_04944 +0.5 2.8 transcriptional regulator, LysR family compare
H281DRAFT_01304 +0.5 1.8 formaldehyde activating enzyme compare
H281DRAFT_05102 +0.5 1.5 ribosome maturation factor RimP compare
H281DRAFT_01726 +0.5 1.3 transcriptional regulator, TetR family compare
H281DRAFT_04618 +0.5 1.2 putative regulatory protein, FmdB family compare
H281DRAFT_01321 +0.5 1.5 probable H4MPT-linked C1 transfer pathway protein compare
H281DRAFT_01721 +0.5 0.9 zinc-binding alcohol dehydrogenase family protein compare
H281DRAFT_01488 +0.5 2.0 hypothetical protein compare
H281DRAFT_02931 +0.5 2.3 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_05774 +0.5 2.4 flagellar biosynthetic protein FliR compare
H281DRAFT_02195 +0.5 1.8 Protein of unknown function (DUF3185) compare
H281DRAFT_03326 +0.5 2.3 PAS domain S-box-containing protein compare
H281DRAFT_06556 +0.5 1.5 hypothetical protein compare
H281DRAFT_02706 +0.5 2.1 L-fuculose-phosphate aldolase compare
H281DRAFT_02959 +0.5 1.9 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_03163 +0.5 1.8 Protein of unknown function (DUF3348) compare
H281DRAFT_01706 +0.5 1.2 transcriptional regulator, MarR family compare
H281DRAFT_00697 +0.5 2.2 FAD/FMN-containing dehydrogenase compare
H281DRAFT_03717 +0.5 1.2 Rhodanese-related sulfurtransferase compare
H281DRAFT_01814 +0.5 1.5 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_04722 +0.5 1.2 Cell division and transport-associated protein TolQ compare
H281DRAFT_01182 +0.5 1.8 SnoaL-like domain-containing protein compare
H281DRAFT_04904 +0.5 1.0 outer membrane transport energization protein ExbD compare
H281DRAFT_05070 +0.5 2.2 camphor resistance protein CrcB compare
H281DRAFT_05294 +0.5 1.3 histidine ammonia-lyase compare
H281DRAFT_06046 +0.5 0.8 serine/threonine protein phosphatase 1 compare
H281DRAFT_00737 +0.5 1.3 Methylase involved in ubiquinone/menaquinone biosynthesis compare
H281DRAFT_03723 +0.5 1.4 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_02170 +0.4 1.3 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_05227 +0.4 2.6 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_02300 +0.4 2.3 hypothetical protein compare
H281DRAFT_05267 +0.4 1.3 3-hydroxypropanoate dehydrogenase compare
H281DRAFT_06419 +0.4 0.9 putative toxin-antitoxin system antitoxin component, TIGR02293 family compare
H281DRAFT_05212 +0.4 2.2 Sugar phosphate permease compare
H281DRAFT_01644 +0.4 1.1 muconolactone delta-isomerase compare
H281DRAFT_06355 +0.4 0.9 4-oxalomesaconate hydratase compare
H281DRAFT_01007 +0.4 1.3 hypothetical protein compare
H281DRAFT_06058 +0.4 1.5 transcriptional regulator, AraC family compare
H281DRAFT_05121 +0.4 1.3 hypothetical protein compare
H281DRAFT_04448 +0.4 0.9 L-threonine aldolase compare
H281DRAFT_05816 +0.4 3.5 soluble lytic murein transglycosylase compare
H281DRAFT_05544 +0.4 0.9 NitT/TauT family transport system permease protein compare
H281DRAFT_06441 +0.4 1.7 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_02888 +0.4 1.1 hypothetical protein compare
H281DRAFT_05062 +0.4 2.3 MFS transporter, putative metabolite:H+ symporter compare
H281DRAFT_04400 +0.4 3.4 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_02751 +0.4 1.9 carboxylesterase compare
H281DRAFT_06170 +0.4 1.2 hypothetical protein compare
H281DRAFT_04915 +0.4 1.9 asparaginase compare
H281DRAFT_02941 +0.4 1.6 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_01338 +0.4 1.7 outer membrane transport energization protein ExbB compare
H281DRAFT_05252 +0.4 2.6 amino acid adenylation domain-containing protein compare
H281DRAFT_05097 +0.4 2.2 putative transposase compare
H281DRAFT_00862 +0.4 2.4 DNA end-binding protein Ku compare
H281DRAFT_06385 +0.4 1.0 hypothetical protein compare
H281DRAFT_05536 +0.4 1.8 hypothetical protein compare
H281DRAFT_02511 +0.4 1.9 transcriptional regulator, LysR family compare
H281DRAFT_01142 +0.4 1.2 2,5-furandicarboxylate decarboxylase 2 compare
H281DRAFT_06462 +0.4 0.5 hypothetical protein compare
H281DRAFT_01880 +0.4 1.1 two component transcriptional regulator, LuxR family compare
H281DRAFT_04869 +0.4 0.9 imidazolonepropionase compare
H281DRAFT_02104 +0.4 1.9 Acyl dehydratase compare
H281DRAFT_05645 +0.4 2.0 phospholipid transport system substrate-binding protein compare
H281DRAFT_01519 +0.4 1.5 fructuronate reductase compare
H281DRAFT_03399 +0.4 0.7 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) compare
H281DRAFT_00202 +0.4 1.7 RNA polymerase sigma factor, sigma-70 family compare
H281DRAFT_02886 +0.4 2.7 1-aminocyclopropane-1-carboxylate deaminase compare
H281DRAFT_03005 +0.4 1.2 hypothetical protein compare
H281DRAFT_06195 +0.4 2.0 hypothetical protein compare
H281DRAFT_06109 +0.4 1.0 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_05678 +0.4 1.1 hypothetical protein compare
H281DRAFT_01085 +0.4 1.1 Membrane protein TerC, possibly involved in tellurium resistance compare
H281DRAFT_01067 +0.4 0.8 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_06281 +0.4 2.6 MJ0042 family finger-like domain-containing protein compare
H281DRAFT_05246 +0.4 1.2 Predicted membrane protein compare
H281DRAFT_00953 +0.4 2.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01660 +0.4 1.8 4-hydroxyphenylacetate 3-monooxygenase reductase component (EC 1.14.13.3) compare
H281DRAFT_00888 +0.4 1.0 phytoene synthase compare
H281DRAFT_04594 +0.4 1.6 putative oxepin-CoA hydrolase (EC 3.3.2.12) (from data) compare
H281DRAFT_02584 +0.4 1.0 hypothetical protein compare
H281DRAFT_03226 +0.4 0.8 mannose-binding protein /fructose-binding protein /ribose-binding protein compare
H281DRAFT_04318 +0.4 1.5 ribosome-associated protein compare
H281DRAFT_02952 +0.4 1.0 fructuronate reductase compare
H281DRAFT_01444 +0.4 1.7 Multidrug efflux pump subunit AcrB compare
H281DRAFT_04433 +0.4 1.3 Undecaprenyl-diphosphatase compare
H281DRAFT_03605 +0.4 2.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_04421 +0.4 1.7 phosphohistidine phosphatase, SixA compare
H281DRAFT_02755 +0.4 1.0 Uncharacterized membrane protein compare
H281DRAFT_05923 +0.4 1.4 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
H281DRAFT_05124 +0.4 2.0 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_04877 +0.4 1.9 Predicted dithiol-disulfide oxidoreductase, DUF899 family compare
H281DRAFT_01108 +0.4 0.8 Glycosyltransferase involved in cell wall bisynthesis compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source D-Glucose across organisms