Experiment set12S491 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Sodium D,L-Lactate carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_01108 +1.3 2.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04618 +1.3 3.6 putative regulatory protein, FmdB family compare
H281DRAFT_03890 +1.1 2.9 Broad specificity phosphatase PhoE compare
H281DRAFT_03460 +1.1 2.1 Protein of unknown function (DUF2950) compare
H281DRAFT_06490 +1.0 2.2 hypothetical protein compare
H281DRAFT_04654 +0.9 1.2 NAD(P) transhydrogenase subunit alpha compare
H281DRAFT_03184 +0.9 1.7 cation diffusion facilitator family transporter compare
H281DRAFT_01322 +0.9 1.7 Predicted ATP-dependent carboligase, ATP-grasp superfamily compare
H281DRAFT_03448 +0.9 1.5 Predicted ester cyclase compare
H281DRAFT_05545 +0.9 1.9 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_00575 +0.8 3.6 Uncharacterized conserved protein YtfP, gamma-glutamylcyclotransferase (GGCT)/AIG2-like family compare
H281DRAFT_06473 +0.8 2.5 NTE family protein compare
H281DRAFT_00176 +0.8 0.9 outer membrane lipoprotein carrier protein compare
H281DRAFT_02651 +0.8 1.6 transcriptional regulator, MerR family compare
H281DRAFT_02459 +0.8 2.4 sarcosine oxidase subunit gamma compare
H281DRAFT_02443 +0.8 1.6 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_01518 +0.8 2.4 D-mannonate dehydratase (EC 4.2.1.8) compare
H281DRAFT_04904 +0.7 1.8 outer membrane transport energization protein ExbD compare
H281DRAFT_03440 +0.7 2.1 PAP2 superfamily protein compare
H281DRAFT_04584 +0.7 1.9 transcriptional regulator, AlpA family compare
H281DRAFT_04999 +0.7 2.4 type III secretion protein HrpB7 compare
H281DRAFT_02058 +0.7 1.0 cholesterol transport system auxiliary component compare
H281DRAFT_03130 +0.7 1.6 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_00782 +0.7 2.9 transcriptional regulator, LysR family compare
H281DRAFT_05764 +0.7 2.9 flagellar basal-body rod modification protein FlgD compare
H281DRAFT_01894 +0.7 1.5 transcriptional regulator, MarR family compare
H281DRAFT_04889 +0.7 1.4 hypothetical protein compare
H281DRAFT_03221 +0.7 2.3 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_06070 +0.7 2.5 FimV C-terminal domain-containing protein compare
H281DRAFT_02441 +0.7 1.1 putative ABC transport system ATP-binding protein compare
H281DRAFT_01584 +0.7 1.5 enamidase compare
H281DRAFT_02488 +0.7 2.8 NitT/TauT family transport system permease protein compare
H281DRAFT_00152 +0.7 1.5 Protein of unknown function (DUF3460) compare
H281DRAFT_00893 +0.7 1.9 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_03576 +0.7 1.6 two-component system, chemotaxis family, response regulator CheY compare
H281DRAFT_01229 +0.7 1.4 Sugar phosphate permease compare
H281DRAFT_06107 +0.7 2.4 GTPase, G3E family compare
H281DRAFT_05646 +0.7 1.6 hypothetical protein compare
H281DRAFT_05755 +0.7 2.3 flagellar biosynthesis protein FlhG compare
H281DRAFT_01318 +0.7 1.9 hypothetical protein compare
H281DRAFT_06011 +0.6 1.8 SSU ribosomal protein S21P compare
H281DRAFT_04733 +0.6 1.8 Protein of unknown function (DUF3318) compare
H281DRAFT_00603 +0.6 2.5 ZipA, C-terminal FtsZ-binding domain compare
H281DRAFT_03906 +0.6 2.0 D-methionine transport system ATP-binding protein compare
H281DRAFT_01688 +0.6 1.9 aliphatic nitrilase compare
H281DRAFT_04391 +0.6 4.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01149 +0.6 0.8 two-component system, OmpR family, sensor histidine kinase QseC compare
H281DRAFT_05457 +0.6 2.7 2,3-dihydroxyphenylpropionate 1,2-dioxygenase compare
H281DRAFT_03878 +0.6 2.4 xylose ABC transporter ATP-binding protein compare
H281DRAFT_04787 +0.6 1.7 polysaccharide transporter, PST family compare
H281DRAFT_02958 +0.6 2.1 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_06285 +0.6 1.5 3-dehydroquinate dehydratase compare
H281DRAFT_03287 +0.6 1.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04169 +0.6 3.2 outer membrane protein, multidrug efflux system compare
H281DRAFT_00731 +0.6 2.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03956 +0.6 1.9 Protein of unknown function (DUF2848) compare
H281DRAFT_01050 +0.6 2.1 maleylacetate reductase compare
H281DRAFT_06163 +0.6 1.1 hypothetical protein compare
H281DRAFT_02007 +0.6 4.9 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_02682 +0.6 1.8 MFS transporter, AAHS family, 4-hydroxybenzoate transporter compare
H281DRAFT_00281 +0.6 2.2 Spermidine synthase compare
H281DRAFT_05376 +0.6 1.4 hypothetical protein compare
H281DRAFT_04585 +0.6 1.6 hypothetical protein compare
H281DRAFT_00418 +0.6 1.1 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_01262 +0.6 1.4 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_00102 +0.5 1.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_05784 +0.5 2.3 flagellar assembly protein FliH compare
H281DRAFT_03226 +0.5 1.1 mannose-binding protein /fructose-binding protein /ribose-binding protein compare
H281DRAFT_03385 +0.5 1.9 NADPH2 dehydrogenase compare
H281DRAFT_06343 +0.5 2.0 transcriptional regulator, AsnC family compare
H281DRAFT_05775 +0.5 3.3 flagellar biosynthetic protein FliQ compare
H281DRAFT_05157 +0.5 1.3 allantoin racemase compare
H281DRAFT_02998 +0.5 2.0 transcriptional regulator, LuxR family compare
H281DRAFT_06560 +0.5 1.3 hypothetical protein compare
H281DRAFT_01047 +0.5 1.4 GTP cyclohydrolase II compare
H281DRAFT_06000 +0.5 1.7 transcriptional regulator, AraC family compare
H281DRAFT_04800 +0.5 1.5 protein SCO1/2 compare
H281DRAFT_05762 +0.5 1.8 flagellar basal-body rod protein FlgB compare
H281DRAFT_01846 +0.5 2.1 hypothetical protein compare
H281DRAFT_00849 +0.5 2.3 conserved hypothetical protein compare
H281DRAFT_04165 +0.5 2.3 S-formylglutathione hydrolase compare
H281DRAFT_03611 +0.5 1.2 hopanoid-associated phosphorylase compare
H281DRAFT_05928 +0.5 1.5 hypothetical protein compare
H281DRAFT_06355 +0.5 1.6 4-oxalomesaconate hydratase compare
H281DRAFT_05767 +0.5 1.7 flagellar basal-body rod protein FlgG compare
H281DRAFT_03891 +0.5 2.8 Probable cobalt transporter subunit (CbtB) compare
H281DRAFT_03398 +0.5 1.8 protein of unknown function (DUF3331) compare
H281DRAFT_04440 +0.5 1.6 Predicted NTP pyrophosphohydrolase, NUDIX family compare
H281DRAFT_02764 +0.5 1.2 hypothetical protein compare
H281DRAFT_01399 +0.5 1.0 arsenite efflux membrane protein ArsB compare
H281DRAFT_03422 +0.5 1.7 dihydroxyacid dehydratase (EC 4.2.1.9) compare
H281DRAFT_02720 +0.5 1.3 GAF domain-containing protein compare
H281DRAFT_03502 +0.5 1.2 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_00888 +0.5 1.3 phytoene synthase compare
H281DRAFT_00675 +0.5 2.6 malonate transporter, MadL subunit compare
H281DRAFT_04893 +0.5 1.6 transcriptional regulator, LysR family compare
H281DRAFT_01426 +0.5 2.0 transcriptional regulator, TetR family compare
H281DRAFT_00977 +0.5 1.7 hypothetical protein compare
H281DRAFT_04609 +0.5 1.8 hypothetical protein compare
H281DRAFT_05183 +0.5 1.5 putrescine transport system permease protein compare
H281DRAFT_05334 +0.5 1.2 Short-chain dehydrogenase compare
H281DRAFT_06120 +0.5 0.8 hypothetical protein compare
H281DRAFT_05868 +0.5 1.2 2-Methylisocitrate lyase, PEP mutase family compare
H281DRAFT_01061 +0.5 1.2 hypothetical protein compare
H281DRAFT_05281 +0.5 1.0 triphosphoribosyl-dephospho-CoA synthase compare
H281DRAFT_03456 +0.5 0.9 transcriptional regulator, LysR family compare
H281DRAFT_01766 +0.5 1.8 cytochrome c oxidase subunit 2 compare
H281DRAFT_01183 +0.5 1.3 Sugar lactone lactonase YvrE compare
H281DRAFT_02624 +0.5 1.9 4-carboxymuconolactone decarboxylase compare
H281DRAFT_00345 +0.5 1.8 Transglutaminase-like enzyme, putative cysteine protease compare
H281DRAFT_05778 +0.5 1.3 flagellar motor switch protein FliN/FliY compare
H281DRAFT_01235 +0.5 2.1 DNA-binding protein H-NS compare
H281DRAFT_04390 +0.5 3.3 ATP-binding cassette, subfamily B compare
H281DRAFT_03758 +0.5 2.2 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_04218 +0.5 1.2 hypothetical protein compare
H281DRAFT_04312 +0.5 2.0 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_00733 +0.5 1.7 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02873 +0.5 1.1 ketopantoate reductase (EC 1.1.1.169) compare
H281DRAFT_04250 +0.5 2.1 DNA-binding protein Fis compare
H281DRAFT_05610 +0.5 1.4 hypothetical protein compare
H281DRAFT_03351 +0.5 1.4 transcriptional regulator, IclR family compare
H281DRAFT_00231 +0.5 1.5 hypothetical protein compare
H281DRAFT_00815 +0.5 2.4 hemoglobin compare
H281DRAFT_01190 +0.4 1.0 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_00202 +0.4 2.4 RNA polymerase sigma factor, sigma-70 family compare
H281DRAFT_04318 +0.4 1.6 ribosome-associated protein compare
H281DRAFT_04944 +0.4 2.0 transcriptional regulator, LysR family compare
H281DRAFT_01005 +0.4 1.0 PilZ domain-containing protein compare
H281DRAFT_02871 +0.4 2.8 3-(3-hydroxy-phenyl)propionate hydroxylase compare
H281DRAFT_03705 +0.4 1.9 transcriptional regulator, GntR family compare
H281DRAFT_01689 +0.4 1.5 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_00469 +0.4 1.5 phasin family protein compare
H281DRAFT_00992 +0.4 1.7 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_01883 +0.4 0.7 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_05934 +0.4 1.2 Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains compare
H281DRAFT_03315 +0.4 0.8 HSP20 family protein compare
H281DRAFT_04498 +0.4 2.7 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family compare
H281DRAFT_06457 +0.4 2.0 hypothetical protein compare
H281DRAFT_03310 +0.4 2.3 cytochrome c oxidase subunit 1 compare
H281DRAFT_03322 +0.4 2.0 hypothetical protein compare
H281DRAFT_04930 +0.4 1.6 Cupin domain compare
H281DRAFT_05267 +0.4 1.2 3-hydroxypropanoate dehydrogenase compare
H281DRAFT_04626 +0.4 1.8 acetyl-CoA acyltransferase compare
H281DRAFT_00332 +0.4 1.8 methyl-accepting chemotaxis protein compare
H281DRAFT_04901 +0.4 1.6 microcin C transport system permease protein compare
H281DRAFT_00397 +0.4 1.3 GreA/GreB family elongation factor compare
H281DRAFT_04536 +0.4 1.8 protein of unknown function (DUF4126) compare
H281DRAFT_03905 +0.4 1.7 D-methionine transport system permease protein compare
H281DRAFT_00470 +0.4 3.0 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_06056 +0.4 3.3 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_02692 +0.4 0.9 nudix-type nucleoside diphosphatase, YffH/AdpP family compare
H281DRAFT_02104 +0.4 1.9 Acyl dehydratase compare
H281DRAFT_03061 +0.4 1.1 hypothetical protein compare
H281DRAFT_00090 +0.4 1.7 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
H281DRAFT_01632 +0.4 3.6 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_00240 +0.4 3.0 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_01165 +0.4 1.1 hypothetical protein compare
H281DRAFT_05225 +0.4 1.7 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_05188 +0.4 2.2 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_04981 +0.4 1.8 Protein of unknown function (DUF3563) compare
H281DRAFT_05248 +0.4 1.0 hypothetical protein compare
H281DRAFT_03764 +0.4 0.8 ribulose-bisphosphate carboxylase large chain compare
H281DRAFT_06531 +0.4 1.3 cob(II)yrinic acid a,c-diamide reductase /5,6-dimethylbenzimidazole synthase compare
H281DRAFT_03846 +0.4 1.8 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit compare
H281DRAFT_02704 +0.4 1.1 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_00658 +0.4 0.8 transcriptional regulator, IclR family compare
H281DRAFT_04562 +0.4 1.1 polyribonucleotide nucleotidyltransferase compare
H281DRAFT_00358 +0.4 1.9 Aldo/keto reductase compare
H281DRAFT_02584 +0.4 1.1 hypothetical protein compare
H281DRAFT_05021 +0.4 0.8 Response regulator compare
H281DRAFT_03872 +0.4 1.8 hypothetical protein compare
H281DRAFT_02641 +0.4 1.6 putative copper resistance protein D compare
H281DRAFT_06462 +0.4 0.9 hypothetical protein compare
H281DRAFT_05629 +0.4 2.2 hypothetical protein compare
H281DRAFT_01644 +0.4 1.0 muconolactone delta-isomerase compare
H281DRAFT_03572 +0.4 0.7 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_01276 +0.4 1.4 vanillin synthase /trans-feruloyl-CoA hydratase compare
H281DRAFT_04768 +0.4 1.2 colanic acid biosynthesis protein WcaH compare
H281DRAFT_03452 +0.4 1.6 HlyD family secretion protein compare
H281DRAFT_04213 +0.4 1.7 hypothetical protein compare
H281DRAFT_04062 +0.4 1.8 amino acid/amide ABC transporter membrane protein 1, HAAT family compare
H281DRAFT_05067 +0.4 1.0 protein of unknown function (DUF3597) compare
H281DRAFT_03864 +0.4 1.6 protocatechuate 3,4-dioxygenase, alpha subunit compare
H281DRAFT_03798 +0.4 1.0 NitT/TauT family transport system permease protein compare
H281DRAFT_01173 +0.4 1.9 Outer membrane protein (porin) compare
H281DRAFT_05414 +0.4 1.1 Predicted signal-transduction protein containing cAMP-binding and CBS domains compare
H281DRAFT_00253 +0.4 1.6 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_04228 +0.4 2.6 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_05769 +0.4 2.4 flagellar P-ring protein precursor FlgI compare
H281DRAFT_05867 +0.4 0.7 uncharacterized peroxidase-related enzyme compare
H281DRAFT_02848 +0.4 1.6 Fe-S-cluster containining protein compare
H281DRAFT_03995 +0.4 1.5 hypothetical protein compare
H281DRAFT_03143 +0.4 2.1 FAD/FMN-containing dehydrogenase compare
H281DRAFT_04796 +0.4 1.7 Polysaccharide biosynthesis protein compare
H281DRAFT_04802 +0.4 1.7 negative transcriptional regulator, PaiB family compare
H281DRAFT_05768 +0.4 1.2 flagellar L-ring protein precursor FlgH compare
H281DRAFT_04425 +0.4 1.0 hypothetical protein compare
H281DRAFT_01197 +0.4 1.9 NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains compare
H281DRAFT_02593 +0.4 1.5 aerobic C4-dicarboxylate transport protein compare
H281DRAFT_02906 +0.4 1.7 transcriptional regulator, GntR family conserved


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium D,L-Lactate in Paraburkholderia bryophila 376MFSha3.1

For carbon source Sodium D,L-Lactate across organisms